Literature DB >> 22839751

P+ state of nitrogenase p-cluster exhibits electronic structure of a [Fe4S4]+ cluster.

Kresimir Rupnik1, Yilin Hu, Chi Chung Lee, Jared A Wiig, Markus W Ribbe, Brian J Hales.   

Abstract

Mo nitrogenase consists of two component proteins: the Fe protein, which contains a [Fe(4)S(4)] cluster, and the MoFe protein, which contains two different classes of metal cluster: P-cluster ([Fe(8)S(7)]) and FeMoco ([MoFe(7)S(9)C·homocitrate]). The P-cluster is believed to mediate the electron transfer between the Fe protein and the MoFe protein via interconversions between its various oxidation states, such as the all-ferrous state (P(N)) and the one- (P(+)) and two-electron (P(2+)) oxidized states. While the structural and electronic properties of P(N) and P(2+) states have been well characterized, little is known about the electronic structure of the P(+) state. Here, a mutant strain of Azotobacter vinelandii (DJ1193) was used to facilitate the characterization of the P(+) state of P-cluster. This strain expresses a MoFe protein variant (designated ΔnifB β-188(Cys) MoFe protein) that accumulates the P(+) form of P-cluster in the resting state. Magnetic circular dichroism (MCD) spectrum of the P-cluster in the oxidized ΔnifB β-188(Cys) MoFe protein closely resembles that of the P(2+) state in the oxidized wild-type MoFe protein, except for the absence of a major charge-transfer band centered at 823 nm. Moreover, magnetization curves of ΔnifB β-188(Cys) and wild-type MoFe proteins suggest that the P(2+) species in both proteins have the same spin state. MCD spectrum of the P(+) state in the ΔnifB β-188(Cys) MoFe protein, on the other hand, is associated with a classic [Fe(4)S(4)](+) cluster, suggesting that the P-cluster could be viewed as two coupled 4Fe clusters and that it could donate either one or two electrons to FeMoco by using one or both of its 4Fe halves. Such a mode of action of P-cluster could provide energetic and kinetic advantages to nitrogenase in the complex mechanism of N(2) reduction.

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Year:  2012        PMID: 22839751      PMCID: PMC3442605          DOI: 10.1021/ja304077h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

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Authors:  S M Mayer; D M Lawson; C A Gormal; S M Roe; B E Smith
Journal:  J Mol Biol       Date:  1999-10-01       Impact factor: 5.469

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

4.  Nitrogenase. VIII. Mössbauer and EPR spectroscopy. The MoFe protein component from Azotobacter vinelandii OP.

Authors:  E Münck; H Rhodes; W H Orme-Johnson; L C Davis; W J Brill; V K Shah
Journal:  Biochim Biophys Acta       Date:  1975-07-21

5.  The role of methionine 156 in cross-subunit nucleotide interactions in the iron protein of nitrogenase.

Authors:  E H Bursey; B K Burgess
Journal:  J Biol Chem       Date:  1998-11-06       Impact factor: 5.157

6.  57Fe ENDOR spectroscopy and 'electron inventory' analysis of the nitrogenase E4 intermediate suggest the metal-ion core of FeMo-cofactor cycles through only one redox couple.

Authors:  Peter E Doan; Joshua Telser; Brett M Barney; Robert Y Igarashi; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

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8.  A second nitrogenase-like enzyme for bacteriochlorophyll biosynthesis: reconstitution of chlorophyllide a reductase with purified X-protein (BchX) and YZ-protein (BchY-BchZ) from Rhodobacter capsulatus.

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9.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

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Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

10.  Structure of precursor-bound NifEN: a nitrogenase FeMo cofactor maturase/insertase.

Authors:  Jens T Kaiser; Yilin Hu; Jared A Wiig; Douglas C Rees; Markus W Ribbe
Journal:  Science       Date:  2011-01-07       Impact factor: 47.728

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  17 in total

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Authors:  Cedric P Owens; Faith E H Katz; Cole H Carter; Victoria F Oswald; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2016-08-08       Impact factor: 15.419

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Authors:  Sonny C Lee; Wayne Lo; R H Holm
Journal:  Chem Rev       Date:  2014-01-13       Impact factor: 60.622

3.  Electronic landscape of the P-cluster of nitrogenase as revealed through many-electron quantum wavefunction simulations.

Authors:  Zhendong Li; Sheng Guo; Qiming Sun; Garnet Kin-Lic Chan
Journal:  Nat Chem       Date:  2019-09-30       Impact factor: 24.427

Review 4.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

5.  Exploring Electron/Proton Transfer and Conformational Changes in the Nitrogenase MoFe Protein and FeMo-cofactor Through Cryoreduction/EPR Measurements.

Authors:  Roman Davydov; Nimesh Khadka; Zhi-Yong Yang; Andrew J Fielding; Dmitriy Lukoyanov; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

Review 6.  Electron Transfer in Nitrogenase.

Authors:  Hannah L Rutledge; F Akif Tezcan
Journal:  Chem Rev       Date:  2020-01-30       Impact factor: 60.622

7.  Structural characterization of the P1+ intermediate state of the P-cluster of nitrogenase.

Authors:  Stephen M Keable; Oleg A Zadvornyy; Lewis E Johnson; Bojana Ginovska; Andrew J Rasmussen; Karamatullah Danyal; Brian J Eilers; Gregory A Prussia; Axl X LeVan; Simone Raugei; Lance C Seefeldt; John W Peters
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8.  A VTVH MCD and EPR Spectroscopic Study of the Maturation of the "Second" Nitrogenase P-Cluster.

Authors:  Kresimir Rupnik; Chi Chung Lee; Yilin Hu; Markus W Ribbe; Brian J Hales
Journal:  Inorg Chem       Date:  2018-04-03       Impact factor: 5.165

Review 9.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

10.  Characterization of Paramagnetic Iron-Sulfur Clusters Using Electron Paramagnetic Resonance Spectroscopy.

Authors:  Troy A Stich
Journal:  Methods Mol Biol       Date:  2021
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