Literature DB >> 27777444

Exploring Electron/Proton Transfer and Conformational Changes in the Nitrogenase MoFe Protein and FeMo-cofactor Through Cryoreduction/EPR Measurements.

Roman Davydov1, Nimesh Khadka2, Zhi-Yong Yang2, Andrew J Fielding2, Dmitriy Lukoyanov1, Dennis R Dean3, Lance C Seefeldt2, Brian M Hoffman1.   

Abstract

We combine cryoreduction/annealing/EPR measurements of nitrogenase MoFe protein with results of earlier investigations to provide a detailed view of the electron/proton transfer events and conformational changes that occur during early stages of [e-/H+] accumulation by the MoFe protein. This includes reduction of (i) the non-catalytic state of the iron-molybdenum cofactor (FeMo-co) active site that is generated by chemical oxidation of the resting-state cofactor (S = 3/2)) within resting MoFe (E0), and (ii) the catalytic state that has accumulated n =1 [e-/H+] above the resting-state level, denoted E1(1H) (S ≥ 1) in the Lowe-Thorneley kinetic scheme. FeMo-co does not undergo a major change of conformation during reduction of oxidized FeMo-co. In contrast, FeMo-co undergoes substantial conformational changes during the reduction of E0 to E1(1H), and of E1(1H) to E2(2H) (n = 2; S = 3/2). The experimental results further suggest that the E1(1H) → E2(2H) step involves coupled delivery of a proton and electron (PCET) to FeMo-co of E1(H) to generate a non-equilibrium S = ½ form E2(2H)*. This subsequently undergoes conformational relaxation and attendant change in FeMo-co spin state, to generate the equilibrium E2(2H) (S = 3/2) state. Unexpectedly, these experiments also reveal conformational coupling between FeMo-co and P-cluster, and between Fe protein binding and FeMo-co, which might play a role in gated ET from reduced Fe protein to FeMo-co.

Entities:  

Keywords:  Enzyme catalysis

Year:  2016        PMID: 27777444      PMCID: PMC5074565          DOI: 10.1002/ijch.201600026

Source DB:  PubMed          Journal:  Isr J Chem        ISSN: 0021-2148            Impact factor:   3.333


  33 in total

1.  Electron paramagnetic resonance analysis of different Azotobacter vinelandii nitrogenase MoFe-protein conformations generated during enzyme turnover: evidence for S = 3/2 spin states from reduced MoFe-protein intermediates.

Authors:  K Fisher; W E Newton; D J Lowe
Journal:  Biochemistry       Date:  2001-03-20       Impact factor: 3.162

2.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state.

Authors:  Dmitriy Lukoyanov; Brett M Barney; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

4.  The stereochemistry and dynamics of the introduction of hydrogen atoms onto FeMo-co, the active site of nitrogenase.

Authors:  Ian Dance
Journal:  Inorg Chem       Date:  2013-10-29       Impact factor: 5.165

Review 5.  Biochemistry and theory of proton-coupled electron transfer.

Authors:  Agostino Migliore; Nicholas F Polizzi; Michael J Therien; David N Beratan
Journal:  Chem Rev       Date:  2014-04-01       Impact factor: 60.622

Review 6.  Electron transfer in nitrogenase catalysis.

Authors:  Lance C Seefeldt; Brian M Hoffman; Dennis R Dean
Journal:  Curr Opin Chem Biol       Date:  2012-03-05       Impact factor: 8.822

7.  Electron-paramagnetic-resonance studies on the redox properties of the molybdenum-iron protein of nitrogenase between +50 and -450 mV.

Authors:  M J O'Donnell; B E Smith
Journal:  Biochem J       Date:  1978-09-01       Impact factor: 3.857

8.  Catalytic and biophysical properties of a nitrogenase Apo-MoFe protein produced by a nifB-deletion mutant of Azotobacter vinelandii.

Authors:  J Christiansen; P J Goodwin; W N Lanzilotta; L C Seefeldt; D R Dean
Journal:  Biochemistry       Date:  1998-09-08       Impact factor: 3.162

9.  Catalytic conversion of nitrogen to ammonia by an iron model complex.

Authors:  John S Anderson; Jonathan Rittle; Jonas C Peters
Journal:  Nature       Date:  2013-09-05       Impact factor: 49.962

10.  A confirmation of the quench-cryoannealing relaxation protocol for identifying reduction states of freeze-trapped nitrogenase intermediates.

Authors:  Dmitriy Lukoyanov; Zhi-Yong Yang; Simon Duval; Karamatullah Danyal; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Inorg Chem       Date:  2014-03-18       Impact factor: 5.165

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  6 in total

1.  Short-lived neutral FMN and FAD semiquinones are transient intermediates in cryo-reduced yeast NADPH-cytochrome P450 reductase.

Authors:  Roman M Davydov; Gareth Jennings; Brian M Hoffman; Larissa M Podust
Journal:  Arch Biochem Biophys       Date:  2019-08-22       Impact factor: 4.013

2.  Shallow Distance Dependence for Proton-Coupled Tyrosine Oxidation in Oligoproline Peptides.

Authors:  Brian Koronkiewicz; John Swierk; Kevin Regan; James M Mayer
Journal:  J Am Chem Soc       Date:  2020-06-29       Impact factor: 15.419

Review 3.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

4.  Spectroscopic Description of the E1 State of Mo Nitrogenase Based on Mo and Fe X-ray Absorption and Mössbauer Studies.

Authors:  Casey Van Stappen; Roman Davydov; Zhi-Yong Yang; Ruixi Fan; Yisong Guo; Eckhard Bill; Lance C Seefeldt; Brian M Hoffman; Serena DeBeer
Journal:  Inorg Chem       Date:  2019-08-23       Impact factor: 5.165

5.  X-ray Magnetic Circular Dichroism Spectroscopy Applied to Nitrogenase and Related Models: Experimental Evidence for a Spin-Coupled Molybdenum(III) Center.

Authors:  Joanna K Kowalska; Justin T Henthorn; Casey Van Stappen; Christian Trncik; Oliver Einsle; David Keavney; Serena DeBeer
Journal:  Angew Chem Int Ed Engl       Date:  2019-06-18       Impact factor: 15.336

6.  Analysis of the Geometric and Electronic Structure of Spin-Coupled Iron-Sulfur Dimers with Broken-Symmetry DFT: Implications for FeMoco.

Authors:  Bardi Benediktsson; Ragnar Bjornsson
Journal:  J Chem Theory Comput       Date:  2022-02-15       Impact factor: 6.006

  6 in total

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