Literature DB >> 22825423

HACking the centromere chromatin code: insights from human artificial chromosomes.

Jan H Bergmann1, Nuno M C Martins, Vladimir Larionov, Hiroshi Masumoto, William C Earnshaw.   

Abstract

The centromere is a specialized chromosomal region that serves as the assembly site of the kinetochore. At the centromere, CENP-A nucleosomes form part of a chromatin landscape termed centrochromatin. This chromatin environment conveys epigenetic marks regulating kinetochore formation. Recent work sheds light on the intricate relationship between centrochromatin state, the CENP-A assembly pathway and the maintenance of centromere function. Here, we review the emerging picture of how chromatin affects mammalian kinetochore formation. We place particular emphasis on data obtained from Human Artificial Chromosome (HAC) biology and the targeted engineering of centrochromatin using synthetic HACs. We discuss implications of these findings, which indicate that a delicate balance of histone modifications and chromatin state dictates both de novo centromere formation and the maintenance of centromere identity in dividing cell populations.

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Year:  2012        PMID: 22825423     DOI: 10.1007/s10577-012-9293-0

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  118 in total

1.  Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation.

Authors:  Amita A Joshi; Kevin Struhl
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

3.  Comprehensive analysis of the ICEN (Interphase Centromere Complex) components enriched in the CENP-A chromatin of human cells.

Authors:  Hiroshi Izuta; Masashi Ikeno; Nobutaka Suzuki; Takeshi Tomonaga; Naohito Nozaki; Chikashi Obuse; Yasutomo Kisu; Naoki Goshima; Fumio Nomura; Nobuo Nomura; Kinya Yoda
Journal:  Genes Cells       Date:  2006-06       Impact factor: 1.891

4.  The cenpB gene is not essential in mice.

Authors:  M Kapoor; R Montes de Oca Luna; G Liu; G Lozano; C Cummings; M Mancini; I Ouspenski; B R Brinkley; G S May
Journal:  Chromosoma       Date:  1998-12       Impact factor: 4.316

5.  Epigenetic engineering: histone H3K9 acetylation is compatible with kinetochore structure and function.

Authors:  Jan H Bergmann; Julia N Jakubsche; Nuno M Martins; Alexander Kagansky; Megumi Nakano; Hiroshi Kimura; David A Kelly; Bryan M Turner; Hiroshi Masumoto; Vladimir Larionov; William C Earnshaw
Journal:  J Cell Sci       Date:  2012-02-13       Impact factor: 5.285

6.  Variable and hierarchical size distribution of L1-retroelement-enriched CENP-A clusters within a functional human neocentromere.

Authors:  Anderly C Chueh; Lee H Wong; Nicholas Wong; K H Andy Choo
Journal:  Hum Mol Genet       Date:  2004-11-10       Impact factor: 6.150

7.  Histone H3 lysine 4 methylation patterns in higher eukaryotic genes.

Authors:  Robert Schneider; Andrew J Bannister; Fiona A Myers; Alan W Thorne; Colyn Crane-Robinson; Tony Kouzarides
Journal:  Nat Cell Biol       Date:  2003-12-07       Impact factor: 28.824

8.  Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Authors:  Claudio Casola; Donald Hucks; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2007-10-16       Impact factor: 16.240

9.  Isolation of a yeast centromere and construction of functional small circular chromosomes.

Authors:  L Clarke; J Carbon
Journal:  Nature       Date:  1980-10-09       Impact factor: 49.962

10.  Direct binding of Cenp-C to the Mis12 complex joins the inner and outer kinetochore.

Authors:  Emanuela Screpanti; Anna De Antoni; Gregory M Alushin; Arsen Petrovic; Tiziana Melis; Eva Nogales; Andrea Musacchio
Journal:  Curr Biol       Date:  2011-02-25       Impact factor: 10.834

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  28 in total

1.  Identification of the Post-translational Modifications Present in Centromeric Chromatin.

Authors:  Aaron O Bailey; Tanya Panchenko; Jeffrey Shabanowitz; Stephanie M Lehman; Dina L Bai; Donald F Hunt; Ben E Black; Daniel R Foltz
Journal:  Mol Cell Proteomics       Date:  2015-12-18       Impact factor: 5.911

Review 2.  Transcription and ncRNAs: at the cent(rome)re of kinetochore assembly and maintenance.

Authors:  Kristin C Scott
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

Review 3.  Using human artificial chromosomes to study centromere assembly and function.

Authors:  Oscar Molina; Natalay Kouprina; Hiroshi Masumoto; Vladimir Larionov; William C Earnshaw
Journal:  Chromosoma       Date:  2017-07-07       Impact factor: 4.316

Review 4.  Genetic and epigenetic regulation of centromeres: a look at HAC formation.

Authors:  Jun-ichirou Ohzeki; Vladimir Larionov; William C Earnshaw; Hiroshi Masumoto
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

Review 5.  Genomic and functional variation of human centromeres.

Authors:  Lori L Sullivan; Beth A Sullivan
Journal:  Exp Cell Res       Date:  2020-02-06       Impact factor: 3.905

Review 6.  Alpha satellite DNA biology: finding function in the recesses of the genome.

Authors:  Shannon M McNulty; Beth A Sullivan
Journal:  Chromosome Res       Date:  2018-07-05       Impact factor: 5.239

Review 7.  Unraveling the 3D genome: genomics tools for multiscale exploration.

Authors:  Viviana I Risca; William J Greenleaf
Journal:  Trends Genet       Date:  2015-04-14       Impact factor: 11.639

Review 8.  A new generation of human artificial chromosomes for functional genomics and gene therapy.

Authors:  Natalay Kouprina; William C Earnshaw; Hiroshi Masumoto; Vladimir Larionov
Journal:  Cell Mol Life Sci       Date:  2012-08-21       Impact factor: 9.261

9.  Comparative study of artificial chromosome centromeres in human and murine cells.

Authors:  Daniela Moralli; Andrew Jefferson; Emanuela Valeria Volpi; Zoia Larin Monaco
Journal:  Eur J Hum Genet       Date:  2013-02-13       Impact factor: 4.246

Review 10.  Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Chromosoma       Date:  2016-04-26       Impact factor: 4.316

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