Literature DB >> 22907415

A new generation of human artificial chromosomes for functional genomics and gene therapy.

Natalay Kouprina1, William C Earnshaw, Hiroshi Masumoto, Vladimir Larionov.   

Abstract

Since their description in the late 1990s, human artificial chromosomes (HACs) carrying a functional kinetochore were considered as a promising system for gene delivery and expression with a potential to overcome many problems caused by the use of viral-based gene transfer systems. Indeed, HACs avoid the limited cloning capacity, lack of copy number control and insertional mutagenesis due to integration into host chromosomes that plague viral vectors. Nevertheless, until recently, HACs have not been widely recognized because of uncertainties of their structure and the absence of a unique gene acceptor site. The situation changed a few years ago after engineering of HACs with a single loxP gene adopter site and a defined structure. In this review, we summarize recent progress made in HAC technology and concentrate on details of two of the most advanced HACs, 21HAC generated by truncation of human chromosome 21 and alphoid(tetO)-HAC generated de novo using a synthetic tetO-alphoid DNA array. Multiple potential applications of the HAC vectors are discussed, specifically the unique features of two of the most advanced HAC cloning systems.

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Year:  2012        PMID: 22907415      PMCID: PMC3522797          DOI: 10.1007/s00018-012-1113-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  96 in total

Review 1.  Strategies for engineering human chromosomes with therapeutic potential.

Authors:  Richard Saffery; K H Andy Choo
Journal:  J Gene Med       Date:  2002 Jan-Feb       Impact factor: 4.565

2.  Human artificial chromosome (HAC) vector with a conditional centromere for correction of genetic deficiencies in human cells.

Authors:  Jung-Hyun Kim; Artem Kononenko; Indri Erliandri; Tae-Aug Kim; Megumi Nakano; Yuichi Iida; J Carl Barrett; Mitsuo Oshimura; Hiroshi Masumoto; William C Earnshaw; Vladimir Larionov; Natalay Kouprina
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

3.  Functional complementation of a genetic deficiency with human artificial chromosomes.

Authors:  J E Mejía; A Willmott; E Levy; W C Earnshaw; Z Larin
Journal:  Am J Hum Genet       Date:  2001-07-10       Impact factor: 11.025

4.  Efficiency of de novo centromere formation in human artificial chromosomes.

Authors:  José E Mejía; Anas Alazami; Adrian Willmott; Peter Marschall; Elaine Levy; William C Earnshaw; Zoia Larin
Journal:  Genomics       Date:  2002-03       Impact factor: 5.736

5.  Hematopoietic stem cell gene therapy with a lentiviral vector in X-linked adrenoleukodystrophy.

Authors:  Nathalie Cartier; Salima Hacein-Bey-Abina; Cynthia C Bartholomae; Gabor Veres; Manfred Schmidt; Ina Kutschera; Michel Vidaud; Ulrich Abel; Liliane Dal-Cortivo; Laure Caccavelli; Nizar Mahlaoui; Véronique Kiermer; Denice Mittelstaedt; Céline Bellesme; Najiba Lahlou; François Lefrère; Stéphane Blanche; Muriel Audit; Emmanuel Payen; Philippe Leboulch; Bruno l'Homme; Pierre Bougnères; Christof Von Kalle; Alain Fischer; Marina Cavazzana-Calvo; Patrick Aubourg
Journal:  Science       Date:  2009-11-06       Impact factor: 47.728

6.  Antigen-specific human polyclonal antibodies from hyperimmunized cattle.

Authors:  Yoshimi Kuroiwa; Poothappillai Kasinathan; Thillainayagen Sathiyaseelan; Jin-an Jiao; Hiroaki Matsushita; Janaki Sathiyaseelan; Hua Wu; Jenny Mellquist; Melissa Hammitt; Julie Koster; Satoru Kamoda; Katsumi Tachibana; Isao Ishida; James M Robl
Journal:  Nat Biotechnol       Date:  2009-01-18       Impact factor: 54.908

7.  Treatment of nonalbumin rats by transplantation of immortalized hepatocytes using artificial human chromosome.

Authors:  M Ito; M Ikeno; H Nagata; T Yamamoto; A Hiroguchi; I J Fox; S Miyakawa
Journal:  Transplant Proc       Date:  2009 Jan-Feb       Impact factor: 1.066

8.  Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

Review 9.  Human artificial chromosome vectors meet stem cells: new prospects for gene delivery.

Authors:  Xianying Ren; Candice Ginn T Tahimic; Motonobu Katoh; Akihiro Kurimasa; Toshiaki Inoue; Mitsuo Oshimura
Journal:  Stem Cell Rev       Date:  2006       Impact factor: 6.692

10.  Human artificial chromosome with a conditional centromere for gene delivery and gene expression.

Authors:  Yuichi Iida; Jung-Hyun Kim; Yasuhiro Kazuki; Hidetoshi Hoshiya; Masato Takiguchi; Masahiro Hayashi; Indri Erliandri; Hee-Sheung Lee; Alex Samoshkin; Hiroshi Masumoto; William C Earnshaw; Natalay Kouprina; Vladimir Larionov; Mitsuo Oshimura
Journal:  DNA Res       Date:  2010-08-26       Impact factor: 4.458

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  35 in total

1.  Rhodopsin Genomic Loci DNA Nanoparticles Improve Expression and Rescue of Retinal Degeneration in a Model for Retinitis Pigmentosa.

Authors:  Min Zheng; Rajendra N Mitra; Ellen R Weiss; Zongchao Han
Journal:  Mol Ther       Date:  2019-12-14       Impact factor: 11.454

Review 2.  Using human artificial chromosomes to study centromere assembly and function.

Authors:  Oscar Molina; Natalay Kouprina; Hiroshi Masumoto; Vladimir Larionov; William C Earnshaw
Journal:  Chromosoma       Date:  2017-07-07       Impact factor: 4.316

Review 3.  Centromere Structure and Function.

Authors:  Kerry Bloom; Vincenzo Costanzo
Journal:  Prog Mol Subcell Biol       Date:  2017

Review 4.  De novo formation and epigenetic maintenance of centromere chromatin.

Authors:  Junichirou Ohzeki; Vladimir Larionov; William C Earnshaw; Hiroshi Masumoto
Journal:  Curr Opin Cell Biol       Date:  2019-01-15       Impact factor: 8.382

Review 5.  De novo formed satellite DNA-based mammalian artificial chromosomes and their possible applications.

Authors:  Robert L Katona
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

6.  The transfer of human artificial chromosomes via cryopreserved microcells.

Authors:  Narumi Uno; Katsuhiro Uno; Susi Zatti; Kana Ueda; Masaharu Hiratsuka; Motonobu Katoh; Mitsuo Oshimura
Journal:  Cytotechnology       Date:  2013-03-15       Impact factor: 2.058

Review 7.  Use of genetically modified mesenchymal stem cells to treat neurodegenerative diseases.

Authors:  Robert D Wyse; Gary L Dunbar; Julien Rossignol
Journal:  Int J Mol Sci       Date:  2014-01-23       Impact factor: 5.923

8.  Bi-HAC vector system toward gene and cell therapy.

Authors:  Yuichi Iida; Yasuhiro Kazuki; Masahiro Hayashi; Yasuji Ueda; Mamoru Hasegawa; Natalay Kouprina; Vladimir Larionov; Mitsuo Oshimura
Journal:  ACS Synth Biol       Date:  2014-01-09       Impact factor: 5.110

Review 9.  Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Chromosoma       Date:  2016-04-26       Impact factor: 4.316

10.  MicroRNAs Regulating Autophagy in Neurodegeneration.

Authors:  Qingxuan Lai; Nikolai Kovzel; Ruslan Konovalov; Ilya A Vinnikov
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

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