| Literature DB >> 22815360 |
Tom Taverner1, Yuliya V Karpievitch, Ashoka D Polpitiya, Joseph N Brown, Alan R Dabney, Gordon A Anderson, Richard D Smith.
Abstract
MOTIVATION: The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized software for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab. AVAILABILITY: DanteR and its associated user guide are available for download free of charge at http://omics.pnl.gov/software/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation. CONTACT: rds@pnnl.gov.Mesh：
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Year: 2012 PMID： 22815360 PMCID： PMC3436848 DOI： 10.1093/bioinformatics/bts449
Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937