Literature DB >> 22807873

(R)-4-Isopropyl-3-isopropyl-sulfanyl-5,5-diphenyl-1,3-oxazolidin-2-one.

Gustavo Pozza Silveira, Cassandra Bonfante de Carvallho, Allen Oliver.   

Abstract

The title compound, C(21)H(25)NO(2)S, consists of a five-membered heterocyclic ring, with pendant phenyl groups, an isopropyl group and a thio-ether residue. The thio-ether bonds to the heterocycle via the N atom. The absolute configuration results from an inversion of the configuration of substrate during the synthesis.

Entities:  

Year:  2012        PMID: 22807873      PMCID: PMC3393316          DOI: 10.1107/S160053681202569X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the preparation of chiral auxiliaries containing sulfilimine functionalities, see: Celentano et al. (1998 ▶). For a related structure, see: Valle et al. (1992 ▶). For the synthesis, see: Hinter­mann & Seebach (1998 ▶); Derbesy & Harpp (1995 ▶). For the structural characterization and absolute configuration analysis, see: Flack (1983 ▶); Hooft et al. (2008 ▶). For a description of the Cambridge Structural Database, see Allen (2002 ▶).

Experimental

Crystal data

C21H25NO2S M = 355.48 Orthorhombic, a = 6.0621 (1) Å b = 17.2963 (3) Å c = 18.5398 (3) Å V = 1943.93 (6) Å3 Z = 4 Cu Kα radiation μ = 1.58 mm−1 T = 100 K 0.50 × 0.23 × 0.21 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: numerical (SADABS; Sheldrick, 2008 ▶) T min = 0.720, T max = 0.964 18292 measured reflections 3008 independent reflections 2887 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.071 S = 1.06 3008 reflections 230 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1165 Friedel pairs Flack parameter: 0.039 (15) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202569X/tk5109sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202569X/tk5109Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202569X/tk5109Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NO2SF(000) = 760
Mr = 355.48Dx = 1.215 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 9921 reflections
a = 6.0621 (1) Åθ = 3.5–68.2°
b = 17.2963 (3) ŵ = 1.58 mm1
c = 18.5398 (3) ÅT = 100 K
V = 1943.93 (6) Å3Block, colourless
Z = 40.50 × 0.23 × 0.21 mm
Bruker SMART APEX diffractometer3008 independent reflections
Radiation source: fine-focus sealed tube2887 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 8.33 pixels mm-1θmax = 68.3°, θmin = 3.5°
combination of ω and φ–scansh = −7→5
Absorption correction: numerical (SADABS; Sheldrick, 2008)k = −20→19
Tmin = 0.720, Tmax = 0.964l = −22→19
18292 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.071w = 1/[σ2(Fo2) + (0.0409P)2 + 0.4225P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.003
3008 reflectionsΔρmax = 0.19 e Å3
230 parametersΔρmin = −0.16 e Å3
0 restraintsAbsolute structure: Flack (1983), 1165 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.039 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.98999 (7)0.85676 (3)0.12949 (2)0.02269 (12)
O11.4437 (2)0.84260 (8)0.20523 (7)0.0278 (3)
O21.2940 (2)0.88301 (7)0.30979 (6)0.0219 (3)
N11.0729 (2)0.87582 (9)0.21499 (7)0.0209 (3)
C11.2833 (3)0.86441 (11)0.23819 (9)0.0215 (4)
C20.9378 (3)0.91505 (11)0.26982 (8)0.0201 (4)
H2A0.78680.89180.27060.024*
C31.0683 (3)0.88855 (11)0.33765 (9)0.0204 (4)
C40.8825 (3)0.75865 (11)0.13766 (10)0.0262 (4)
H4A0.79050.75490.18230.031*
C51.0669 (3)0.69929 (12)0.14156 (11)0.0344 (5)
H5A1.00330.64730.14400.052*
H5B1.15630.70870.18470.052*
H5C1.16000.70360.09850.052*
C60.7353 (4)0.74711 (14)0.07179 (11)0.0376 (5)
H6A0.67520.69450.07220.056*
H6B0.82230.75490.02780.056*
H6C0.61400.78450.07310.056*
C70.9201 (3)1.00311 (11)0.25872 (9)0.0213 (4)
H7A0.86721.02570.30530.026*
C81.1389 (3)1.04238 (12)0.24058 (10)0.0283 (4)
H8A1.24491.03300.27950.042*
H8B1.11531.09810.23520.042*
H8C1.19691.02120.19540.042*
C90.7481 (3)1.02356 (12)0.20090 (10)0.0303 (5)
H9A0.60980.99640.21120.045*
H9B0.80291.00790.15340.045*
H9C0.72181.07950.20120.045*
C101.0041 (3)0.80762 (10)0.36471 (8)0.0215 (4)
C111.1590 (3)0.76845 (12)0.40647 (10)0.0275 (5)
H11A1.29990.79090.41450.033*
C121.1099 (4)0.69714 (12)0.43639 (10)0.0345 (5)
H12A1.21760.67090.46440.041*
C130.9050 (4)0.66396 (12)0.42565 (10)0.0327 (5)
H13A0.87090.61520.44640.039*
C140.7502 (3)0.70267 (12)0.38436 (10)0.0300 (5)
H14A0.60950.68000.37650.036*
C150.7983 (3)0.77417 (11)0.35432 (9)0.0249 (4)
H15A0.69000.80040.32650.030*
C161.0661 (3)0.94454 (11)0.40064 (9)0.0205 (4)
C170.8725 (3)0.95254 (12)0.44058 (9)0.0250 (4)
H17A0.74490.92410.42710.030*
C180.8645 (3)1.00158 (12)0.49972 (9)0.0287 (5)
H18A0.73111.00700.52610.034*
C191.0499 (3)1.04269 (12)0.52041 (9)0.0299 (5)
H19A1.04541.07560.56140.036*
C201.2420 (3)1.03529 (11)0.48068 (9)0.0266 (4)
H20A1.36901.06390.49430.032*
C211.2520 (3)0.98667 (11)0.42123 (9)0.0249 (4)
H21A1.38520.98210.39460.030*
U11U22U33U12U13U23
S10.0304 (2)0.0230 (3)0.01463 (18)−0.00277 (19)−0.00080 (17)0.00131 (18)
O10.0247 (7)0.0330 (9)0.0257 (6)0.0008 (5)0.0016 (5)−0.0044 (6)
O20.0207 (6)0.0255 (8)0.0193 (5)0.0003 (5)−0.0009 (5)−0.0012 (5)
N10.0228 (8)0.0238 (9)0.0160 (6)0.0004 (6)0.0001 (5)−0.0017 (7)
C10.0253 (9)0.0182 (11)0.0208 (8)−0.0043 (8)0.0007 (7)−0.0007 (8)
C20.0231 (9)0.0195 (10)0.0177 (8)−0.0017 (7)−0.0001 (6)−0.0002 (8)
C30.0196 (9)0.0220 (11)0.0196 (8)0.0000 (7)0.0006 (6)0.0008 (8)
C40.0327 (11)0.0224 (11)0.0236 (8)−0.0059 (8)0.0022 (8)−0.0020 (9)
C50.0399 (12)0.0245 (12)0.0389 (11)0.0001 (9)−0.0032 (9)0.0033 (10)
C60.0386 (12)0.0356 (13)0.0386 (11)0.0019 (10)−0.0097 (9)−0.0143 (10)
C70.0257 (9)0.0209 (11)0.0173 (7)0.0008 (7)−0.0006 (7)0.0011 (8)
C80.0340 (11)0.0229 (11)0.0280 (9)−0.0017 (8)0.0006 (8)0.0064 (9)
C90.0315 (11)0.0273 (13)0.0320 (9)0.0032 (8)−0.0049 (8)0.0033 (9)
C100.0318 (9)0.0180 (10)0.0148 (7)0.0020 (8)0.0030 (8)−0.0020 (7)
C110.0350 (11)0.0249 (12)0.0227 (8)0.0008 (8)−0.0038 (8)0.0019 (9)
C120.0510 (13)0.0273 (13)0.0252 (9)0.0087 (10)−0.0037 (9)0.0036 (10)
C130.0575 (13)0.0169 (12)0.0236 (9)0.0020 (9)0.0091 (9)0.0017 (9)
C140.0382 (11)0.0240 (12)0.0277 (9)−0.0029 (8)0.0068 (8)−0.0015 (9)
C150.0291 (10)0.0218 (11)0.0237 (8)0.0009 (8)0.0024 (7)0.0006 (9)
C160.0269 (10)0.0179 (10)0.0167 (7)0.0017 (7)−0.0033 (6)0.0044 (8)
C170.0284 (10)0.0232 (11)0.0234 (9)0.0005 (8)−0.0008 (7)0.0035 (9)
C180.0401 (11)0.0256 (12)0.0204 (8)0.0071 (9)0.0045 (8)0.0010 (9)
C190.0483 (13)0.0224 (11)0.0190 (8)0.0074 (9)−0.0063 (8)−0.0014 (9)
C200.0367 (11)0.0187 (11)0.0244 (9)−0.0006 (8)−0.0117 (8)−0.0003 (8)
C210.0298 (10)0.0217 (11)0.0231 (8)0.0016 (8)−0.0035 (7)0.0023 (9)
S1—N11.6952 (14)C20—C211.388 (3)
S1—C41.8240 (19)C2—H2A1.0000
O1—C11.209 (2)C4—H4A1.0000
O2—C11.367 (2)C5—H5A0.9800
O2—C31.466 (2)C5—H5B0.9800
N1—C11.361 (2)C5—H5C0.9800
N1—C21.471 (2)C6—H6A0.9800
C2—C71.541 (3)C6—H6B0.9800
C2—C31.555 (2)C6—H6C0.9800
C3—C161.517 (3)C7—H7A1.0000
C3—C101.537 (3)C8—H8A0.9800
C4—C51.519 (3)C8—H8B0.9800
C4—C61.525 (3)C8—H8C0.9800
C7—C81.528 (3)C9—H9A0.9800
C7—C91.537 (2)C9—H9B0.9800
C10—C151.388 (3)C9—H9C0.9800
C10—C111.393 (3)C11—H11A0.9500
C11—C121.385 (3)C12—H12A0.9500
C12—C131.383 (3)C13—H13A0.9500
C13—C141.384 (3)C14—H14A0.9500
C14—C151.387 (3)C15—H15A0.9500
C16—C171.395 (2)C17—H17A0.9500
C16—C211.395 (3)C18—H18A0.9500
C17—C181.387 (3)C19—H19A0.9500
C18—C191.385 (3)C20—H20A0.9500
C19—C201.384 (3)C21—H21A0.9500
N1—S1—C4102.07 (8)C4—C5—H5B109.5
C1—O2—C3108.25 (12)H5A—C5—H5B109.5
C1—N1—C2111.72 (13)C4—C5—H5C109.5
C1—N1—S1123.04 (12)H5A—C5—H5C109.5
C2—N1—S1124.82 (11)H5B—C5—H5C109.5
O1—C1—N1129.76 (16)C4—C6—H6A109.5
O1—C1—O2121.74 (15)C4—C6—H6B109.5
N1—C1—O2108.50 (14)H6A—C6—H6B109.5
N1—C2—C7113.74 (14)C4—C6—H6C109.5
N1—C2—C398.05 (13)H6A—C6—H6C109.5
C7—C2—C3115.78 (14)H6B—C6—H6C109.5
O2—C3—C16108.72 (14)C8—C7—H7A107.1
O2—C3—C10106.96 (14)C9—C7—H7A107.1
C16—C3—C10109.14 (14)C2—C7—H7A107.1
O2—C3—C2102.07 (12)C7—C8—H8A109.5
C16—C3—C2115.48 (15)C7—C8—H8B109.5
C10—C3—C2113.81 (15)H8A—C8—H8B109.5
C5—C4—C6112.33 (16)C7—C8—H8C109.5
C5—C4—S1111.71 (13)H8A—C8—H8C109.5
C6—C4—S1105.32 (14)H8B—C8—H8C109.5
C8—C7—C9109.46 (15)C7—C9—H9A109.5
C8—C7—C2114.11 (15)C7—C9—H9B109.5
C9—C7—C2111.60 (15)H9A—C9—H9B109.5
C15—C10—C11118.71 (17)C7—C9—H9C109.5
C15—C10—C3124.17 (16)H9A—C9—H9C109.5
C11—C10—C3116.97 (17)H9B—C9—H9C109.5
C12—C11—C10120.71 (19)C12—C11—H11A119.6
C13—C12—C11120.3 (2)C10—C11—H11A119.6
C12—C13—C14119.21 (19)C13—C12—H12A119.8
C13—C14—C15120.7 (2)C11—C12—H12A119.8
C14—C15—C10120.31 (18)C12—C13—H13A120.4
C17—C16—C21118.85 (17)C14—C13—H13A120.4
C17—C16—C3118.63 (16)C13—C14—H14A119.6
C21—C16—C3122.49 (15)C15—C14—H14A119.6
C18—C17—C16120.67 (18)C14—C15—H15A119.8
C19—C18—C17120.29 (18)C10—C15—H15A119.8
C18—C19—C20119.23 (17)C18—C17—H17A119.7
C19—C20—C21121.05 (19)C16—C17—H17A119.7
C20—C21—C16119.90 (18)C19—C18—H18A119.9
N1—C2—H2A109.6C17—C18—H18A119.9
C7—C2—H2A109.6C18—C19—H19A120.4
C3—C2—H2A109.6C20—C19—H19A120.4
C5—C4—H4A109.1C19—C20—H20A119.5
C6—C4—H4A109.1C21—C20—H20A119.5
S1—C4—H4A109.1C20—C21—H21A120.0
C4—C5—H5A109.5C16—C21—H21A120.0
C4—S1—N1—C194.18 (16)C16—C3—C10—C15103.39 (18)
C4—S1—N1—C2−93.83 (15)C2—C3—C10—C15−27.2 (2)
C2—N1—C1—O1−170.44 (19)O2—C3—C10—C1145.47 (19)
S1—N1—C1—O12.5 (3)C16—C3—C10—C11−71.98 (19)
C2—N1—C1—O28.9 (2)C2—C3—C10—C11157.40 (15)
S1—N1—C1—O2−178.19 (11)C15—C10—C11—C120.7 (3)
C3—O2—C1—O1−166.32 (17)C3—C10—C11—C12176.36 (16)
C3—O2—C1—N114.3 (2)C10—C11—C12—C13−0.5 (3)
C1—N1—C2—C796.89 (17)C11—C12—C13—C140.3 (3)
S1—N1—C2—C7−75.89 (17)C12—C13—C14—C15−0.4 (3)
C1—N1—C2—C3−25.94 (18)C13—C14—C15—C100.7 (3)
S1—N1—C2—C3161.28 (13)C11—C10—C15—C14−0.8 (3)
C1—O2—C3—C16−152.32 (15)C3—C10—C15—C14−176.10 (16)
C1—O2—C3—C1089.95 (16)O2—C3—C16—C17−173.21 (15)
C1—O2—C3—C2−29.84 (18)C10—C3—C16—C17−56.9 (2)
N1—C2—C3—O231.85 (15)C2—C3—C16—C1772.8 (2)
C7—C2—C3—O2−89.47 (16)O2—C3—C16—C215.0 (2)
N1—C2—C3—C16149.59 (15)C10—C3—C16—C21121.36 (18)
C7—C2—C3—C1628.3 (2)C2—C3—C16—C21−108.93 (19)
N1—C2—C3—C10−83.01 (16)C21—C16—C17—C180.1 (3)
C7—C2—C3—C10155.67 (14)C3—C16—C17—C18178.38 (17)
N1—S1—C4—C5−76.73 (14)C16—C17—C18—C19−0.7 (3)
N1—S1—C4—C6161.06 (13)C17—C18—C19—C201.1 (3)
N1—C2—C7—C8−44.64 (18)C18—C19—C20—C21−0.9 (3)
C3—C2—C7—C867.84 (19)C19—C20—C21—C160.2 (3)
N1—C2—C7—C980.09 (18)C17—C16—C21—C200.2 (3)
C3—C2—C7—C9−167.43 (14)C3—C16—C21—C20−178.05 (17)
O2—C3—C10—C15−139.16 (16)
  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

Authors:  Rob W W Hooft; Leo H Straver; Anthony L Spek
Journal:  J Appl Crystallogr       Date:  2008-01-16       Impact factor: 3.304

  3 in total
  4 in total

1.  5-Benz-yloxy-3-methyl-1-tosyl-1H-indole.

Authors:  Gustavo Pozza Silveira; Allen G Oliver; Bruce C Noll
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-31

2.  Crystal structure of (4R,5S)-4-methyl-3-methyl-sulfinyl-5-phenyl-1,3-oxazolidin-2-one.

Authors:  Gustavo Pozza Silveira; Vinicius Flores da Silva; Allen G Oliver
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-15

3.  Crystal structure of 4-methyl-N-{(E)-meth-yl[(3aR,8aS)-2-oxo-3,3a,8,8a-tetra-hydro-2H-indeno-[1,2-d][1,3]oxazol-3-yl]-λ(4)-sulfanyl-idene}benzene-sulfonamide.

Authors:  Patrícia A Pereira; Bruce C Noll; Allen G Oliver; Gustavo P Silveira
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-12-31

4.  Crystal structure and absolute configuration of (3aR,3'aR,7aS,7'aS)-2,2,2',2'-tetra-methyl-3a,6,7,7a,3'a,6',7',7'a-octa-hydro-4,4'-bi[1,3-benzodioxol-yl], obtained from a Pd-catalyzed homocoupling reaction.

Authors:  Mario A Macías; Enrique Pandolfi; Valeria Schapiro; Gustavo P Silveira; Guilherme D Vilela; Leopoldo Suescun
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-01
  4 in total

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