Literature DB >> 26870517

Crystal structure of 4-methyl-N-{(E)-meth-yl[(3aR,8aS)-2-oxo-3,3a,8,8a-tetra-hydro-2H-indeno-[1,2-d][1,3]oxazol-3-yl]-λ(4)-sulfanyl-idene}benzene-sulfonamide.

Patrícia A Pereira1, Bruce C Noll2, Allen G Oliver3, Gustavo P Silveira1.   

Abstract

The formulation that the title compound, C18H18N2O4S2, adopts is a zwitterionic core with the charge separated to the sulfilimine S and N atoms and is supported by the two different S-N bond distances about the sulfinimine N atom [1.594 (2) and 1.631 (2) Å, respectively] that are typical for such bonds. The notably unusual bond is S-N(oxazolidinone) [1.692 (2) Å] that is longer than a typical S-N bond [1.603 (18) Å, Mogul analysis; Macrae et al. (2008 ▸). J. Appl. Cryst. 41, 466-470]. The bond-angle sum about sulfilimine sulfur (308.35°) reflects the trigonal-pyramidal geometry of this atom. Two of the angles are less than 100°. Despite the pyramidalization of this sulfur, there are no significant inter-molecular inter-actions, beyond usual van der Waals contacts, in the crystal packing.

Entities:  

Keywords:  crystal structure; oxazolidinone; vinyl sulfonamide

Year:  2015        PMID: 26870517      PMCID: PMC4719998          DOI: 10.1107/S2056989015024779

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

Oxazolidinone sulfilimines are synthesized as precursors of vinyl sulfilimines which are used in the γ-lactamization reaction to generate chiral pyrrolidinones with medicinal chemistry inter­est. For the synthesis, see: Celentano & Colonna (1998 ▸); Silveira & Marino (2013 ▸). For sulfonyl oxazolidinone structures, see: Barbey et al. (2012 ▸); Berredjem et al. (2010 ▸); Bonnaud et al. (1987 ▸); Dewynter et al. (1997 ▸). For related vinyl sulfonamide chemistry, see: Silveira et al. (2013 ▸). For related oxazolidinone sulfinime structures, see: Silveira et al. (2012 ▸, 2014 ▸). For the Hooft parameter, see: Hooft et al. (2008 ▸).

Experimental

Crystal data

C18H18N2O4S2 M = 390.46 Orthorhombic, a = 6.8841 (1) Å b = 12.2326 (2) Å c = 20.1911 (4) Å V = 1700.30 (5) Å3 Z = 4 Cu Kα radiation μ = 3.09 mm−1 T = 100 K 0.42 × 0.40 × 0.34 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Krause et al., 2015 ▸) T min = 0.701, T max = 0.929 11963 measured reflections 3004 independent reflections 2984 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.070 S = 1.11 3004 reflections 237 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.36 e Å−3 Absolute structure: Flack x determined using 1183 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.052 (4)

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: APEX2 and SAINT (Bruker, 2007 ▸); data reduction: SAINT and XPREP (Bruker, 2007 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: XCIF (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015024779/nk2234sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015024779/nk2234Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015024779/nk2234Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015024779/nk2234fig1.tif Labeling diagram of the title compound. Atomic displacement ellipsoids depicted at the 50% probability level. Hydrogen atoms depicted as spheres of an arbitrary radius. CCDC reference: 1444186 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H18N2O4S2Dx = 1.525 Mg m3
Mr = 390.46Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, P212121Cell parameters from 9988 reflections
a = 6.8841 (1) Åθ = 4.2–69.2°
b = 12.2326 (2) ŵ = 3.09 mm1
c = 20.1911 (4) ÅT = 100 K
V = 1700.30 (5) Å3Parallelepiped, clear colorless
Z = 40.42 × 0.40 × 0.34 mm
F(000) = 816
Bruker SMART APEX CCD diffractometer3004 independent reflections
Radiation source: fine-focus sealed tube, Siemens KFFCU2K-902984 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 8.33 pixels mm-1θmax = 69.5°, θmin = 4.2°
φ and ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Krause et al., 2015)k = −14→14
Tmin = 0.701, Tmax = 0.929l = −24→22
11963 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0405P)2 + 0.5066P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
3004 reflectionsΔρmax = 0.29 e Å3
237 parametersΔρmin = −0.36 e Å3
0 restraintsAbsolute structure: Flack x determined using 1183 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.052 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.45871 (9)0.55630 (5)0.77781 (3)0.00978 (15)
S20.67201 (9)0.69687 (5)0.85264 (3)0.01185 (16)
O10.3825 (3)0.25928 (14)0.82183 (9)0.0148 (4)
O20.6694 (3)0.34297 (15)0.80444 (9)0.0176 (4)
O30.8276 (3)0.63677 (15)0.82056 (9)0.0175 (4)
O40.6751 (3)0.81443 (15)0.84687 (9)0.0185 (4)
N10.3831 (3)0.44084 (18)0.81606 (11)0.0127 (5)
N20.4579 (3)0.65675 (17)0.82812 (11)0.0132 (5)
C10.4975 (4)0.3476 (2)0.81239 (12)0.0129 (5)
C20.1767 (4)0.2920 (2)0.82310 (13)0.0136 (5)
H20.11060.28090.77950.016*
C30.0725 (4)0.2347 (2)0.87983 (13)0.0148 (6)
H3A−0.06880.22990.87130.018*
H3B0.12460.16010.88670.018*
C40.1142 (4)0.3068 (2)0.93859 (13)0.0124 (5)
C50.0916 (4)0.2842 (2)1.00541 (13)0.0140 (6)
H50.04230.21571.01980.017*
C60.1431 (4)0.3648 (2)1.05088 (13)0.0161 (6)
H60.12580.35121.09680.019*
C70.2188 (4)0.4644 (2)1.03076 (14)0.0157 (6)
H70.25690.51701.06280.019*
C80.2393 (4)0.4875 (2)0.96324 (14)0.0141 (5)
H80.28990.55580.94880.017*
C90.1843 (4)0.4088 (2)0.91814 (13)0.0117 (5)
C100.1900 (4)0.41298 (19)0.84277 (13)0.0116 (5)
H100.08330.45840.82340.014*
C110.2421 (4)0.5860 (2)0.73290 (13)0.0149 (6)
H11A0.13580.59970.76410.022*
H11B0.20890.52370.70460.022*
H11C0.26270.65100.70540.022*
C120.6749 (4)0.6636 (2)0.93784 (12)0.0112 (5)
C130.6177 (4)0.7407 (2)0.98430 (13)0.0136 (5)
H130.57500.81100.97060.016*
C140.6237 (4)0.7138 (2)1.05134 (13)0.0153 (6)
H140.58580.76641.08340.018*
C150.6846 (4)0.6107 (2)1.07178 (13)0.0157 (5)
C160.7366 (4)0.5341 (2)1.02403 (14)0.0152 (6)
H160.77450.46281.03760.018*
C170.7344 (4)0.5596 (2)0.95710 (14)0.0147 (5)
H170.77270.50710.92500.018*
C180.6940 (5)0.5854 (2)1.14496 (14)0.0231 (6)
H18A0.75040.51261.15140.035*
H18B0.56280.58711.16370.035*
H18C0.77520.64001.16720.035*
U11U22U33U12U13U23
S10.0116 (3)0.0111 (3)0.0066 (3)−0.0007 (2)0.0007 (2)0.0007 (2)
S20.0124 (3)0.0139 (3)0.0093 (3)−0.0022 (2)0.0002 (2)−0.0003 (2)
O10.0189 (10)0.0105 (8)0.0151 (9)0.0019 (7)0.0014 (7)−0.0003 (7)
O20.0161 (9)0.0186 (9)0.0179 (9)0.0046 (8)0.0011 (8)0.0004 (8)
O30.0116 (9)0.0269 (10)0.0140 (9)−0.0032 (8)0.0015 (8)−0.0017 (8)
O40.0251 (10)0.0161 (9)0.0143 (9)−0.0067 (8)−0.0028 (8)0.0036 (7)
N10.0141 (11)0.0108 (10)0.0133 (10)0.0016 (9)0.0039 (9)0.0032 (9)
N20.0135 (11)0.0141 (10)0.0118 (10)0.0004 (9)0.0001 (9)−0.0013 (9)
C10.0170 (14)0.0137 (12)0.0080 (12)0.0023 (10)0.0010 (10)−0.0015 (10)
C20.0157 (13)0.0129 (12)0.0121 (12)−0.0016 (11)−0.0025 (11)0.0014 (10)
C30.0173 (14)0.0137 (12)0.0134 (13)−0.0036 (10)−0.0014 (11)0.0008 (11)
C40.0116 (11)0.0133 (12)0.0121 (12)0.0020 (10)−0.0014 (10)0.0006 (11)
C50.0109 (12)0.0164 (13)0.0149 (13)0.0002 (10)0.0010 (10)0.0059 (10)
C60.0122 (13)0.0256 (14)0.0106 (12)0.0041 (11)0.0015 (10)0.0017 (11)
C70.0107 (13)0.0218 (13)0.0145 (13)0.0024 (10)−0.0001 (10)−0.0054 (11)
C80.0114 (12)0.0135 (12)0.0174 (13)0.0023 (10)0.0033 (10)−0.0010 (11)
C90.0090 (11)0.0148 (12)0.0111 (12)0.0030 (10)0.0025 (11)0.0023 (10)
C100.0112 (12)0.0120 (12)0.0117 (12)0.0003 (9)0.0010 (11)0.0030 (9)
C110.0168 (13)0.0158 (12)0.0122 (13)−0.0026 (10)−0.0057 (10)0.0050 (10)
C120.0087 (11)0.0168 (12)0.0080 (11)−0.0023 (10)−0.0023 (10)0.0024 (9)
C130.0106 (12)0.0158 (12)0.0142 (13)−0.0013 (10)−0.0004 (10)0.0011 (11)
C140.0116 (12)0.0215 (13)0.0127 (12)−0.0028 (10)0.0013 (10)−0.0013 (10)
C150.0111 (12)0.0223 (13)0.0136 (13)−0.0054 (11)−0.0024 (11)0.0031 (11)
C160.0107 (12)0.0156 (12)0.0192 (13)−0.0008 (10)−0.0024 (10)0.0050 (11)
C170.0103 (12)0.0158 (12)0.0180 (13)−0.0003 (10)0.0015 (10)−0.0028 (11)
C180.0263 (16)0.0287 (15)0.0144 (13)−0.0091 (12)−0.0016 (13)0.0049 (11)
S1—N21.594 (2)C7—C81.399 (4)
S1—N11.692 (2)C7—H70.9500
S1—C111.782 (3)C8—C91.378 (4)
S2—O41.4430 (19)C8—H80.9500
S2—O31.451 (2)C9—C101.523 (3)
S2—N21.631 (2)C10—H101.0000
S2—C121.768 (2)C11—H11A0.9800
O1—C11.353 (3)C11—H11B0.9800
O1—C21.472 (3)C11—H11C0.9800
O2—C11.195 (3)C12—C131.387 (4)
N1—C11.388 (3)C12—C171.392 (4)
N1—C101.475 (3)C13—C141.394 (4)
C2—C31.522 (4)C13—H130.9500
C2—C101.535 (3)C14—C151.391 (4)
C2—H21.0000C14—H140.9500
C3—C41.506 (4)C15—C161.392 (4)
C3—H3A0.9900C15—C181.511 (4)
C3—H3B0.9900C16—C171.387 (4)
C4—C51.386 (4)C16—H160.9500
C4—C91.400 (4)C17—H170.9500
C5—C61.393 (4)C18—H18A0.9800
C5—H50.9500C18—H18B0.9800
C6—C71.386 (4)C18—H18C0.9800
C6—H60.9500
N2—S1—N1110.58 (11)C9—C8—H8120.8
N2—S1—C1199.43 (12)C7—C8—H8120.8
N1—S1—C1198.34 (11)C8—C9—C4121.5 (2)
O4—S2—O3117.24 (12)C8—C9—C10129.0 (2)
O4—S2—N2106.79 (12)C4—C9—C10109.5 (2)
O3—S2—N2112.27 (11)N1—C10—C9113.4 (2)
O4—S2—C12107.93 (11)N1—C10—C2100.5 (2)
O3—S2—C12108.03 (12)C9—C10—C2103.0 (2)
N2—S2—C12103.67 (12)N1—C10—H10113.0
C1—O1—C2110.39 (19)C9—C10—H10113.0
C1—N1—C10110.0 (2)C2—C10—H10113.0
C1—N1—S1119.14 (18)S1—C11—H11A109.5
C10—N1—S1129.59 (17)S1—C11—H11B109.5
S1—N2—S2114.97 (13)H11A—C11—H11B109.5
O2—C1—O1124.1 (2)S1—C11—H11C109.5
O2—C1—N1127.5 (2)H11A—C11—H11C109.5
O1—C1—N1108.5 (2)H11B—C11—H11C109.5
O1—C2—C3110.0 (2)C13—C12—C17121.0 (2)
O1—C2—C10102.1 (2)C13—C12—S2119.9 (2)
C3—C2—C10106.1 (2)C17—C12—S2119.0 (2)
O1—C2—H2112.7C12—C13—C14119.2 (2)
C3—C2—H2112.7C12—C13—H13120.4
C10—C2—H2112.7C14—C13—H13120.4
C4—C3—C2103.5 (2)C15—C14—C13120.7 (3)
C4—C3—H3A111.1C15—C14—H14119.6
C2—C3—H3A111.1C13—C14—H14119.6
C4—C3—H3B111.1C14—C15—C16118.9 (2)
C2—C3—H3B111.1C14—C15—C18119.3 (3)
H3A—C3—H3B109.0C16—C15—C18121.9 (3)
C5—C4—C9120.2 (2)C17—C16—C15121.3 (2)
C5—C4—C3128.9 (2)C17—C16—H16119.3
C9—C4—C3110.8 (2)C15—C16—H16119.3
C4—C5—C6118.1 (2)C16—C17—C12118.8 (2)
C4—C5—H5120.9C16—C17—H17120.6
C6—C5—H5120.9C12—C17—H17120.6
C7—C6—C5121.6 (2)C15—C18—H18A109.5
C7—C6—H6119.2C15—C18—H18B109.5
C5—C6—H6119.2H18A—C18—H18B109.5
C6—C7—C8120.1 (3)C15—C18—H18C109.5
C6—C7—H7120.0H18A—C18—H18C109.5
C8—C7—H7120.0H18B—C18—H18C109.5
C9—C8—C7118.3 (2)
S1—N21.594 (2)
S1—N11.692 (2)
S1—C111.782 (3)
S2—O41.4430 (19)
S2—O31.451 (2)
S2—N21.631 (2)
S2—C121.768 (2)
N2—S1—N1110.58 (11)
N2—S1—C1199.43 (12)
N1—S1—C1198.34 (11)
O4—S2—O3117.24 (12)
O4—S2—N2106.79 (12)
O3—S2—N2112.27 (11)
O4—S2—C12107.93 (11)
O3—S2—C12108.03 (12)
N2—S2—C12103.67 (12)
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