| Literature DB >> 28083142 |
Mario A Macías1, Enrique Pandolfi2, Valeria Schapiro2, Gustavo P Silveira3, Guilherme D Vilela3, Leopoldo Suescun4.
Abstract
The absolute configuration, i.e. (3aR,3'aR,7aS,7'aS), of the title compound, C18H26O4, synthesized via a palladium-catalyzed homocoupling reaction, was determined on the basis of the synthetic pathway and was confirmed by X-ray diffraction. The homocoupled mol-ecule is formed by two chemically identical moieties built up from two five- and six-membered fused rings. The supra-molecular assembly is controlled mainly by C-H⋯O inter-actions that lead to the formation of hydrogen-bonded chains of mol-ecules along the [001] direction, while weak dipolar inter-actions and van der Waals forces hold the chains together in the crystal structure.Entities:
Keywords: 1,3-benzodioxolyl; absolute configuration; crystal structure; homocoupling reaction; palladium-catalyzed
Year: 2017 PMID: 28083142 PMCID: PMC5209778 DOI: 10.1107/S2056989016019927
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Synthetic pathway showing the formation of the homocoupled compound C18H26O4.
Figure 2The molecular structure of the title compound, showing anisotropic displacement ellipsoids drawn at the 50% probability level.
Figure 3The crystal structure of the title compound, showing the C—H⋯O hydrogen-bonding interactions (dotted lines) along the [001] direction.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C22 | 0.96 | 2.56 | 3.510 (3) | 171 |
Symmetry code: (i) .
Experimental details
| Crystal data | |
| Chemical formula | C18H26O4 |
|
| 306.39 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 298 |
|
| 6.2927 (7), 17.9903 (19), 7.2991 (8) |
| β (°) | 95.216 (4) |
|
| 822.89 (16) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 0.69 |
| Crystal size (mm) | 0.40 × 0.35 × 0.30 |
| Data collection | |
| Diffractometer | Bruker D8 Venture/Photon 100 CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.687, 0.754 |
| No. of measured, independent and observed [ | 27011, 3232, 3135 |
|
| 0.026 |
| (sin θ/λ)max (Å−1) | 0.618 |
| Refinement | |
|
| 0.027, 0.071, 1.08 |
| No. of reflections | 3232 |
| No. of parameters | 204 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.13, −0.10 |
| Absolute structure | Flack |
| Absolute structure parameter | 0.04 (4) |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXS2014 (Sheldrick, 2008 ▸, 2015 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸) and publCIF (Westrip, 2010 ▸).
| C18H26O4 | |
| Monoclinic, | Cu |
| Cell parameters from 9685 reflections | |
| θ = 4.9–72.4° | |
| µ = 0.69 mm−1 | |
| β = 95.216 (4)° | |
| Parallelepiped, yellow | |
| 0.40 × 0.35 × 0.30 mm |
| Bruker D8 Venture/Photon 100 CMOS diffractometer | 3232 independent reflections |
| Radiation source: Cu Incoatec microsource | 3135 reflections with |
| Detector resolution: 10.4167 pixels mm-1 | |
| φ and ω scans | θmax = 72.4°, θmin = 4.9° |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | |
| 27011 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.13 e Å−3 | |
| 3232 reflections | Δρmin = −0.10 e Å−3 |
| 204 parameters | Extinction correction: SHELXL, |
| 1 restraint | Extinction coefficient: 0.0184 (15) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack |
| Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.04 (4) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C7A | 0.6166 (3) | 1.13949 (11) | 0.8000 (3) | 0.0486 (4) | |
| H7AA | 0.5916 | 1.1910 | 0.7652 | 0.058* | |
| H7AB | 0.6639 | 1.1382 | 0.9302 | 0.058* | |
| C6B | 0.5034 (4) | 0.77162 (12) | 0.6693 (3) | 0.0621 (6) | |
| H6BA | 0.5554 | 0.7523 | 0.5577 | 0.074* | |
| H6BB | 0.3603 | 0.7526 | 0.6774 | 0.074* | |
| C2A | 0.8127 (3) | 1.05458 (10) | 0.4052 (2) | 0.0451 (4) | |
| C7B | 0.6472 (4) | 0.74545 (11) | 0.8343 (3) | 0.0553 (5) | |
| H7BA | 0.5835 | 0.7580 | 0.9464 | 0.066* | |
| H7BB | 0.6625 | 0.6919 | 0.8297 | 0.066* | |
| C22A | 0.6299 (3) | 1.01769 (13) | 0.2920 (3) | 0.0580 (5) | |
| H22D | 0.5609 | 1.0532 | 0.2084 | 0.087* | |
| H22E | 0.5291 | 0.9991 | 0.3719 | 0.087* | |
| H22F | 0.6832 | 0.9773 | 0.2235 | 0.087* | |
| C2B | 1.0094 (3) | 0.83055 (10) | 1.1168 (3) | 0.0480 (4) | |
| C21A | 0.9882 (4) | 1.07986 (15) | 0.2908 (3) | 0.0674 (6) | |
| H21D | 1.0446 | 1.0377 | 0.2306 | 0.101* | |
| H21E | 1.1000 | 1.1030 | 0.3691 | 0.101* | |
| H21F | 0.9314 | 1.1149 | 0.2000 | 0.101* | |
| C21B | 1.2355 (4) | 0.85972 (14) | 1.1342 (4) | 0.0659 (6) | |
| H21A | 1.2803 | 0.8687 | 1.0139 | 0.099* | |
| H21B | 1.3284 | 0.8237 | 1.1970 | 0.099* | |
| H21C | 1.2417 | 0.9053 | 1.2029 | 0.099* | |
| C22B | 0.9298 (5) | 0.81210 (16) | 1.2994 (3) | 0.0716 (7) | |
| H22A | 0.7901 | 0.7905 | 1.2800 | 0.107* | |
| H22B | 0.9231 | 0.8567 | 1.3710 | 0.107* | |
| H22C | 1.0254 | 0.7774 | 1.3637 | 0.107* | |
| C6A | 0.4092 (3) | 1.09664 (11) | 0.7669 (3) | 0.0548 (5) | |
| H6AA | 0.3159 | 1.1102 | 0.8602 | 0.066* | |
| H6AB | 0.3389 | 1.1105 | 0.6481 | 0.066* | |
| C5B | 0.4969 (3) | 0.85505 (11) | 0.6607 (3) | 0.0491 (4) | |
| H5B | 0.3814 | 0.8774 | 0.5935 | 0.059* | |
| C5A | 0.4430 (3) | 1.01436 (10) | 0.7714 (3) | 0.0452 (4) | |
| H5A | 0.3277 | 0.9845 | 0.7940 | 0.054* | |
| C4B | 0.6466 (3) | 0.89895 (9) | 0.7434 (2) | 0.0363 (3) | |
| C4A | 0.6263 (2) | 0.98093 (9) | 0.7455 (2) | 0.0354 (4) | |
| C3AB | 0.8491 (3) | 0.86610 (9) | 0.8348 (2) | 0.0370 (4) | |
| H3AB | 0.9718 | 0.8867 | 0.7785 | 0.044* | |
| O3B | 0.8671 (2) | 0.88358 (7) | 1.02685 (17) | 0.0462 (3) | |
| C3AA | 0.8247 (2) | 1.02504 (9) | 0.7153 (2) | 0.0355 (3) | |
| H3AA | 0.9338 | 1.0159 | 0.8173 | 0.043* | |
| O3A | 0.90773 (18) | 1.00550 (6) | 0.54514 (17) | 0.0426 (3) | |
| C7AB | 0.8628 (3) | 0.78135 (10) | 0.8361 (2) | 0.0452 (4) | |
| H7B | 0.9330 | 0.7645 | 0.7290 | 0.054* | |
| O1B | 0.9974 (3) | 0.76615 (7) | 1.0002 (2) | 0.0601 (4) | |
| C7AA | 0.7894 (3) | 1.10842 (9) | 0.6933 (3) | 0.0423 (4) | |
| H7A | 0.9235 | 1.1349 | 0.7263 | 0.051* | |
| O1A | 0.7303 (3) | 1.11563 (8) | 0.50051 (18) | 0.0580 (4) |
| C7A | 0.0564 (11) | 0.0367 (9) | 0.0508 (10) | 0.0081 (8) | −0.0048 (8) | −0.0077 (8) |
| C6B | 0.0703 (14) | 0.0432 (11) | 0.0720 (14) | −0.0180 (10) | 0.0032 (11) | −0.0097 (10) |
| C2A | 0.0536 (10) | 0.0381 (9) | 0.0439 (9) | 0.0048 (8) | 0.0056 (8) | 0.0063 (7) |
| C7B | 0.0742 (13) | 0.0309 (9) | 0.0634 (12) | −0.0063 (8) | 0.0210 (10) | 0.0003 (8) |
| C22A | 0.0607 (11) | 0.0618 (13) | 0.0506 (11) | 0.0013 (10) | −0.0001 (9) | −0.0027 (9) |
| C2B | 0.0613 (11) | 0.0383 (9) | 0.0438 (9) | 0.0127 (8) | 0.0026 (8) | 0.0052 (7) |
| C21A | 0.0667 (14) | 0.0740 (15) | 0.0628 (13) | −0.0058 (11) | 0.0129 (10) | 0.0236 (11) |
| C21B | 0.0605 (13) | 0.0570 (13) | 0.0785 (15) | 0.0122 (10) | −0.0026 (11) | 0.0089 (11) |
| C22B | 0.0899 (17) | 0.0771 (17) | 0.0488 (12) | 0.0198 (14) | 0.0117 (11) | 0.0137 (11) |
| C6A | 0.0462 (10) | 0.0513 (12) | 0.0652 (12) | 0.0139 (8) | −0.0034 (8) | −0.0090 (9) |
| C5B | 0.0524 (10) | 0.0445 (10) | 0.0495 (10) | −0.0073 (8) | −0.0002 (8) | 0.0003 (8) |
| C5A | 0.0372 (8) | 0.0459 (10) | 0.0521 (10) | −0.0014 (7) | 0.0022 (7) | −0.0023 (8) |
| C4B | 0.0419 (8) | 0.0333 (8) | 0.0342 (8) | −0.0025 (6) | 0.0060 (6) | 0.0024 (6) |
| C4A | 0.0371 (8) | 0.0348 (8) | 0.0334 (8) | −0.0008 (6) | −0.0019 (6) | 0.0006 (6) |
| C3AB | 0.0435 (8) | 0.0295 (8) | 0.0386 (8) | 0.0007 (6) | 0.0074 (6) | 0.0005 (6) |
| O3B | 0.0590 (7) | 0.0379 (6) | 0.0405 (6) | 0.0146 (6) | −0.0024 (5) | −0.0036 (5) |
| C3AA | 0.0347 (7) | 0.0317 (8) | 0.0391 (8) | 0.0016 (6) | −0.0025 (6) | 0.0019 (6) |
| O3A | 0.0453 (6) | 0.0363 (6) | 0.0472 (6) | 0.0065 (5) | 0.0097 (5) | 0.0063 (5) |
| C7AB | 0.0606 (11) | 0.0331 (9) | 0.0433 (9) | 0.0062 (8) | 0.0133 (8) | −0.0010 (7) |
| O1B | 0.0851 (9) | 0.0355 (7) | 0.0581 (8) | 0.0181 (7) | −0.0034 (7) | 0.0022 (6) |
| C7AA | 0.0477 (9) | 0.0297 (8) | 0.0481 (9) | −0.0021 (7) | −0.0038 (7) | 0.0010 (7) |
| O1A | 0.0899 (10) | 0.0370 (7) | 0.0464 (7) | 0.0179 (7) | 0.0028 (7) | 0.0078 (5) |
| C7A—C7AA | 1.502 (3) | C21B—H21B | 0.9600 |
| C7A—C6A | 1.516 (3) | C21B—H21C | 0.9600 |
| C7A—H7AA | 0.9700 | C22B—H22A | 0.9600 |
| C7A—H7AB | 0.9700 | C22B—H22B | 0.9600 |
| C6B—C5B | 1.503 (3) | C22B—H22C | 0.9600 |
| C6B—C7B | 1.514 (3) | C6A—C5A | 1.495 (3) |
| C6B—H6BA | 0.9700 | C6A—H6AA | 0.9700 |
| C6B—H6BB | 0.9700 | C6A—H6AB | 0.9700 |
| C2A—O1A | 1.423 (2) | C5B—C4B | 1.331 (3) |
| C2A—O3A | 1.439 (2) | C5B—H5B | 0.9300 |
| C2A—C22A | 1.508 (3) | C5A—C4A | 1.329 (2) |
| C2A—C21A | 1.514 (3) | C5A—H5A | 0.9300 |
| C7B—C7AB | 1.501 (3) | C4B—C4A | 1.481 (2) |
| C7B—H7BA | 0.9700 | C4B—C3AB | 1.505 (2) |
| C7B—H7BB | 0.9700 | C4A—C3AA | 1.512 (2) |
| C22A—H22D | 0.9600 | C3AB—O3B | 1.431 (2) |
| C22A—H22E | 0.9600 | C3AB—C7AB | 1.527 (2) |
| C22A—H22F | 0.9600 | C3AB—H3AB | 0.9800 |
| C2B—O3B | 1.427 (2) | C3AA—O3A | 1.434 (2) |
| C2B—O1B | 1.435 (2) | C3AA—C7AA | 1.523 (2) |
| C2B—C22B | 1.502 (3) | C3AA—H3AA | 0.9800 |
| C2B—C21B | 1.511 (3) | C7AB—O1B | 1.430 (2) |
| C21A—H21D | 0.9600 | C7AB—H7B | 0.9800 |
| C21A—H21E | 0.9600 | C7AA—O1A | 1.428 (2) |
| C21A—H21F | 0.9600 | C7AA—H7A | 0.9800 |
| C21B—H21A | 0.9600 | ||
| C7AA—C7A—C6A | 112.42 (16) | H22A—C22B—H22B | 109.5 |
| C7AA—C7A—H7AA | 109.1 | C2B—C22B—H22C | 109.5 |
| C6A—C7A—H7AA | 109.1 | H22A—C22B—H22C | 109.5 |
| C7AA—C7A—H7AB | 109.1 | H22B—C22B—H22C | 109.5 |
| C6A—C7A—H7AB | 109.1 | C5A—C6A—C7A | 112.39 (15) |
| H7AA—C7A—H7AB | 107.9 | C5A—C6A—H6AA | 109.1 |
| C5B—C6B—C7B | 110.85 (17) | C7A—C6A—H6AA | 109.1 |
| C5B—C6B—H6BA | 109.5 | C5A—C6A—H6AB | 109.1 |
| C7B—C6B—H6BA | 109.5 | C7A—C6A—H6AB | 109.1 |
| C5B—C6B—H6BB | 109.5 | H6AA—C6A—H6AB | 107.9 |
| C7B—C6B—H6BB | 109.5 | C4B—C5B—C6B | 123.93 (18) |
| H6BA—C6B—H6BB | 108.1 | C4B—C5B—H5B | 118.0 |
| O1A—C2A—O3A | 105.85 (14) | C6B—C5B—H5B | 118.0 |
| O1A—C2A—C22A | 108.30 (16) | C4A—C5A—C6A | 124.64 (17) |
| O3A—C2A—C22A | 111.49 (15) | C4A—C5A—H5A | 117.7 |
| O1A—C2A—C21A | 110.76 (17) | C6A—C5A—H5A | 117.7 |
| O3A—C2A—C21A | 107.39 (16) | C5B—C4B—C4A | 122.49 (16) |
| C22A—C2A—C21A | 112.85 (18) | C5B—C4B—C3AB | 120.26 (16) |
| C7AB—C7B—C6B | 110.32 (16) | C4A—C4B—C3AB | 117.22 (14) |
| C7AB—C7B—H7BA | 109.6 | C5A—C4A—C4B | 121.95 (15) |
| C6B—C7B—H7BA | 109.6 | C5A—C4A—C3AA | 121.45 (15) |
| C7AB—C7B—H7BB | 109.6 | C4B—C4A—C3AA | 116.60 (14) |
| C6B—C7B—H7BB | 109.6 | O3B—C3AB—C4B | 109.67 (13) |
| H7BA—C7B—H7BB | 108.1 | O3B—C3AB—C7AB | 102.38 (13) |
| C2A—C22A—H22D | 109.5 | C4B—C3AB—C7AB | 116.09 (15) |
| C2A—C22A—H22E | 109.5 | O3B—C3AB—H3AB | 109.5 |
| H22D—C22A—H22E | 109.5 | C4B—C3AB—H3AB | 109.5 |
| C2A—C22A—H22F | 109.5 | C7AB—C3AB—H3AB | 109.5 |
| H22D—C22A—H22F | 109.5 | C2B—O3B—C3AB | 107.11 (13) |
| H22E—C22A—H22F | 109.5 | O3A—C3AA—C4A | 111.61 (13) |
| O3B—C2B—O1B | 105.65 (14) | O3A—C3AA—C7AA | 102.20 (13) |
| O3B—C2B—C22B | 108.06 (17) | C4A—C3AA—C7AA | 114.69 (14) |
| O1B—C2B—C22B | 110.10 (19) | O3A—C3AA—H3AA | 109.4 |
| O3B—C2B—C21B | 110.69 (17) | C4A—C3AA—H3AA | 109.4 |
| O1B—C2B—C21B | 109.18 (18) | C7AA—C3AA—H3AA | 109.4 |
| C22B—C2B—C21B | 112.9 (2) | C3AA—O3A—C2A | 107.67 (12) |
| C2A—C21A—H21D | 109.5 | O1B—C7AB—C7B | 113.01 (16) |
| C2A—C21A—H21E | 109.5 | O1B—C7AB—C3AB | 102.98 (15) |
| H21D—C21A—H21E | 109.5 | C7B—C7AB—C3AB | 112.28 (15) |
| C2A—C21A—H21F | 109.5 | O1B—C7AB—H7B | 109.5 |
| H21D—C21A—H21F | 109.5 | C7B—C7AB—H7B | 109.5 |
| H21E—C21A—H21F | 109.5 | C3AB—C7AB—H7B | 109.5 |
| C2B—C21B—H21A | 109.5 | C7AB—O1B—C2B | 109.73 (13) |
| C2B—C21B—H21B | 109.5 | O1A—C7AA—C7A | 109.95 (15) |
| H21A—C21B—H21B | 109.5 | O1A—C7AA—C3AA | 102.46 (14) |
| C2B—C21B—H21C | 109.5 | C7A—C7AA—C3AA | 114.67 (15) |
| H21A—C21B—H21C | 109.5 | O1A—C7AA—H7A | 109.8 |
| H21B—C21B—H21C | 109.5 | C7A—C7AA—H7A | 109.8 |
| C2B—C22B—H22A | 109.5 | C3AA—C7AA—H7A | 109.8 |
| C2B—C22B—H22B | 109.5 | C2A—O1A—C7AA | 109.73 (13) |
| C5B—C6B—C7B—C7AB | −52.6 (2) | C7AA—C3AA—O3A—C2A | −31.87 (16) |
| C7AA—C7A—C6A—C5A | 44.4 (2) | O1A—C2A—O3A—C3AA | 17.72 (18) |
| C7B—C6B—C5B—C4B | 21.4 (3) | C22A—C2A—O3A—C3AA | −99.84 (17) |
| C7A—C6A—C5A—C4A | −21.2 (3) | C21A—C2A—O3A—C3AA | 136.07 (17) |
| C6B—C5B—C4B—C4A | −174.59 (18) | C6B—C7B—C7AB—O1B | 172.70 (16) |
| C6B—C5B—C4B—C3AB | 7.3 (3) | C6B—C7B—C7AB—C3AB | 56.7 (2) |
| C6A—C5A—C4A—C4B | −177.19 (17) | O3B—C3AB—C7AB—O1B | −31.08 (16) |
| C6A—C5A—C4A—C3AA | 2.4 (3) | C4B—C3AB—C7AB—O1B | −150.49 (15) |
| C5B—C4B—C4A—C5A | 41.2 (3) | O3B—C3AB—C7AB—C7B | 90.79 (17) |
| C3AB—C4B—C4A—C5A | −140.59 (17) | C4B—C3AB—C7AB—C7B | −28.6 (2) |
| C5B—C4B—C4A—C3AA | −138.43 (17) | C7B—C7AB—O1B—C2B | −104.65 (19) |
| C3AB—C4B—C4A—C3AA | 39.8 (2) | C3AB—C7AB—O1B—C2B | 16.7 (2) |
| C5B—C4B—C3AB—O3B | −119.03 (18) | O3B—C2B—O1B—C7AB | 4.1 (2) |
| C4A—C4B—C3AB—O3B | 62.73 (18) | C22B—C2B—O1B—C7AB | 120.57 (19) |
| C5B—C4B—C3AB—C7AB | −3.7 (2) | C21B—C2B—O1B—C7AB | −114.94 (18) |
| C4A—C4B—C3AB—C7AB | 178.09 (14) | C6A—C7A—C7AA—O1A | 63.7 (2) |
| O1B—C2B—O3B—C3AB | −25.2 (2) | C6A—C7A—C7AA—C3AA | −51.0 (2) |
| C22B—C2B—O3B—C3AB | −143.02 (19) | O3A—C3AA—C7AA—O1A | 33.75 (16) |
| C21B—C2B—O3B—C3AB | 92.87 (19) | C4A—C3AA—C7AA—O1A | −87.19 (17) |
| C4B—C3AB—O3B—C2B | 158.69 (15) | O3A—C3AA—C7AA—C7A | 152.83 (14) |
| C7AB—C3AB—O3B—C2B | 34.88 (17) | C4A—C3AA—C7AA—C7A | 31.9 (2) |
| C5A—C4A—C3AA—O3A | −122.95 (16) | O3A—C2A—O1A—C7AA | 5.2 (2) |
| C4B—C4A—C3AA—O3A | 56.69 (18) | C22A—C2A—O1A—C7AA | 124.91 (17) |
| C5A—C4A—C3AA—C7AA | −7.3 (2) | C21A—C2A—O1A—C7AA | −110.85 (19) |
| C4B—C4A—C3AA—C7AA | 172.30 (14) | C7A—C7AA—O1A—C2A | −146.62 (16) |
| C4A—C3AA—O3A—C2A | 91.17 (15) | C3AA—C7AA—O1A—C2A | −24.27 (19) |
| H··· | ||||
| C22 | 0.96 | 2.56 | 3.510 (3) | 171 |