Literature DB >> 22805593

The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast.

Alarich Reiter1, Stephan Hamperl, Hannah Seitz, Philipp Merkl, Jorge Perez-Fernandez, Lydia Williams, Jochen Gerber, Attila Németh, Isabelle Léger, Olivier Gadal, Philipp Milkereit, Joachim Griesenbeck, Herbert Tschochner.   

Abstract

Several DNA cis-elements and trans-acting factors were described to be involved in transcription termination and to release the elongating RNA polymerases from their templates. Different models for the molecular mechanism of transcription termination have been suggested for eukaryotic RNA polymerase I (Pol I) from results of in vitro and in vivo experiments. To analyse the molecular requirements for yeast RNA Pol I termination, an in vivo approach was used in which efficient termination resulted in growth inhibition. This led to the identification of a Myb-like protein, Ydr026c, as bona fide termination factor, now designated Nsi1 (NTS1 silencing protein 1), since it was very recently described as silencing factor of ribosomal DNA. Possible Nsi1 functions in regard to the mechanism of transcription termination are discussed.

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Year:  2012        PMID: 22805593      PMCID: PMC3419925          DOI: 10.1038/emboj.2012.185

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  80 in total

1.  A yeast protein that influences the chromatin structure of UASG and functions as a powerful auxiliary gene activator.

Authors:  D I Chasman; N F Lue; A R Buchman; J W LaPointe; Y Lorch; R D Kornberg
Journal:  Genes Dev       Date:  1990-04       Impact factor: 11.361

2.  Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p.

Authors:  W H Lang; R H Reeder
Journal:  Proc Natl Acad Sci U S A       Date:  1995-10-10       Impact factor: 11.205

3.  Alternate pathways for processing in the internal transcribed spacer 1 in pre-rRNA of Saccharomyces cerevisiae.

Authors:  L Lindahl; R H Archer; J M Zengel
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

4.  A model for transcription termination by RNA polymerase I.

Authors:  W H Lang; B E Morrow; Q Ju; J R Warner; R H Reeder
Journal:  Cell       Date:  1994-11-04       Impact factor: 41.582

5.  Purification and characterization of the yeast rDNA binding protein REB1.

Authors:  B E Morrow; Q Ju; J R Warner
Journal:  J Biol Chem       Date:  1990-12-05       Impact factor: 5.157

6.  REB1, a yeast DNA-binding protein with many targets, is essential for growth and bears some resemblance to the oncogene myb.

Authors:  Q D Ju; B E Morrow; J R Warner
Journal:  Mol Cell Biol       Date:  1990-10       Impact factor: 4.272

7.  Specific interaction of the murine transcription termination factor TTF I with class-I RNA polymerases.

Authors:  A Kuhn; I Bartsch; I Grummt
Journal:  Nature       Date:  1990-04-05       Impact factor: 49.962

8.  The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae.

Authors:  W H Lang; R H Reeder
Journal:  Mol Cell Biol       Date:  1993-01       Impact factor: 4.272

9.  A bipartite DNA-binding domain in yeast Reb1p.

Authors:  B E Morrow; Q Ju; J R Warner
Journal:  Mol Cell Biol       Date:  1993-02       Impact factor: 4.272

10.  Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics.

Authors:  Y O Chernoff; A Vincent; S W Liebman
Journal:  EMBO J       Date:  1994-02-15       Impact factor: 11.598

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  18 in total

1.  Functional architecture of the Reb1-Ter complex of Schizosaccharomyces pombe.

Authors:  Rahul Jaiswal; Malay Choudhury; Shamsu Zaman; Samarendra Singh; Vishaka Santosh; Deepak Bastia; Carlos R Escalante
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

2.  Mechanism of Regulation of Intrachromatid Recombination and Long-Range Chromosome Interactions in Saccharomyces cerevisiae.

Authors:  Shamsu Zaman; Malay Choudhury; James C Jiang; Pankaj Srivastava; Bidyut K Mohanty; Christopher Danielson; Sean J Humphrey; S Michal Jazwinski; Deepak Bastia
Journal:  Mol Cell Biol       Date:  2016-05-02       Impact factor: 4.272

Review 3.  A global function for transcription factors in assisting RNA polymerase II termination.

Authors:  Kevin Roy; Guillaume F Chanfreau
Journal:  Transcription       Date:  2017-11-06

Review 4.  Structural Studies of Eukaryotic RNA Polymerase I Using Cryo-Electron Microscopy.

Authors:  Michael Pilsl; Christoph Engel
Journal:  Methods Mol Biol       Date:  2022

5.  An integrated model for termination of RNA polymerase III transcription.

Authors:  Juanjuan Xie; Umberto Aiello; Yves Clement; Nouhou Haidara; Mathias Girbig; Jana Schmitzova; Vladimir Pena; Christoph W Müller; Domenico Libri; Odil Porrua
Journal:  Sci Adv       Date:  2022-07-13       Impact factor: 14.957

Review 6.  Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases.

Authors:  Mathias Girbig; Agata D Misiaszek; Christoph W Müller
Journal:  Nat Rev Mol Cell Biol       Date:  2022-05-03       Impact factor: 113.915

7.  Elucidation of the functional roles of the Q and I motifs in the human chromatin-remodeling enzyme BRG1.

Authors:  Helen Hoffmeister; Andreas Fuchs; Laura Strobl; Frank Sprenger; Regina Gröbner-Ferreira; Stefanie Michaelis; Petra Hoffmann; Julian Nazet; Rainer Merkl; Gernot Längst
Journal:  J Biol Chem       Date:  2019-01-15       Impact factor: 5.157

Review 8.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23

9.  Binding of the termination factor Nsi1 to its cognate DNA site is sufficient to terminate RNA polymerase I transcription in vitro and to induce termination in vivo.

Authors:  Philipp Merkl; Jorge Perez-Fernandez; Michael Pilsl; Alarich Reiter; Lydia Williams; Jochen Gerber; Maria Böhm; Rainer Deutzmann; Joachim Griesenbeck; Philipp Milkereit; Herbert Tschochner
Journal:  Mol Cell Biol       Date:  2014-08-04       Impact factor: 4.272

10.  The N-terminal domain of the A12.2 subunit stimulates RNA polymerase I transcription elongation.

Authors:  Catherine E Scull; Aaron L Lucius; David A Schneider
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

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