Literature DB >> 22798893

1-{4-[Bis(4-fluoro-phen-yl)meth-yl]piperazin-1-yl}ethanone.

A S Dayananda, H S Yathirajan, Amanda C Keeley, Jerry P Jasinski.   

Abstract

In the title compound, C(19)H(20)F(2)N(2)O, the six-membered piperazine group adopts a slightly distorted chair conformation. The dihedral angle between the mean planes of the two benzene rings is 73.4 (6)°. The mean plane of the ethanone group is twisted from the mean planes of the two benzene rings by 66.7 (8) and 86.2 (6)°. In the crystal, C-H⋯O and C-H⋯F inter-actions link the molecules, forming a three-dimensional structure.

Entities:  

Year:  2012        PMID: 22798893      PMCID: PMC3394028          DOI: 10.1107/S1600536812028097

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperazines, see: Bogatcheva et al. (2006 ▶); Brockunier et al. (2004 ▶). For a review of pharmacological and toxicological information for piperazine derivatives, see: Elliott (2011 ▶). For related structures, see: Betz et al. (2011a ▶,b ▶); Dai et al. (2012 ▶); Dayananda et al. (2012a ▶,b ▶); Zhong et al. (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For reference bond-length data, see Allen et al. (1987 ▶).

Experimental

Crystal data

C19H20F2N2O M = 330.37 Monoclinic, a = 10.1701 (5) Å b = 16.5521 (5) Å c = 11.1690 (5) Å β = 114.690 (5)° V = 1708.27 (14) Å3 Z = 4 Cu Kα radiation μ = 0.79 mm−1 T = 173 K 0.48 × 0.32 × 0.22 mm

Data collection

Oxford Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.802, T max = 1.000 10536 measured reflections 3297 independent reflections 2809 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.155 S = 1.04 3297 reflections 218 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812028097/zj2086sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028097/zj2086Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812028097/zj2086Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20F2N2OF(000) = 696
Mr = 330.37Dx = 1.285 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 4103 reflections
a = 10.1701 (5) Åθ = 4.4–71.2°
b = 16.5521 (5) ŵ = 0.79 mm1
c = 11.1690 (5) ÅT = 173 K
β = 114.690 (5)°Chunk, colourless
V = 1708.27 (14) Å30.48 × 0.32 × 0.22 mm
Z = 4
Oxford Xcalibur Eos Gemini diffractometer3297 independent reflections
Radiation source: Enhance (Cu) X-ray Source2809 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 16.1500 pixels mm-1θmax = 71.4°, θmin = 5.0°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −12→20
Tmin = 0.802, Tmax = 1.000l = −13→13
10536 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0781P)2 + 0.7598P] where P = (Fo2 + 2Fc2)/3
3297 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.5160 (2)0.80482 (10)−0.24955 (14)0.0811 (5)
F20.86017 (18)1.06144 (9)0.55722 (15)0.0788 (5)
O10.29530 (17)0.50309 (9)0.41107 (15)0.0534 (4)
N10.40533 (18)0.62266 (10)0.42534 (15)0.0410 (4)
N20.48228 (15)0.75448 (8)0.30161 (13)0.0304 (3)
C10.3741 (3)0.57161 (13)0.6169 (2)0.0520 (5)
H1A0.32120.52980.63710.078*
H1B0.33820.62340.62800.078*
H1C0.47490.56740.67520.078*
C20.3555 (2)0.56254 (11)0.47665 (19)0.0395 (4)
C30.3933 (2)0.61611 (12)0.29096 (19)0.0465 (5)
H3A0.31420.58010.24060.056*
H3B0.48190.59350.29220.056*
C40.3666 (2)0.69801 (12)0.22666 (17)0.0406 (4)
H4A0.36050.69300.13800.049*
H4B0.27490.71890.22060.049*
C50.4817 (2)0.76336 (11)0.43201 (17)0.0363 (4)
H5A0.38860.78420.42220.044*
H5B0.55550.80190.48350.044*
C60.5101 (2)0.68390 (12)0.50348 (18)0.0426 (5)
H6A0.60720.66580.52130.051*
H6B0.50380.69090.58720.051*
C70.46380 (18)0.83174 (11)0.23205 (16)0.0333 (4)
H70.36630.85190.21200.040*
C80.47860 (19)0.82157 (11)0.10209 (17)0.0356 (4)
C90.5661 (2)0.76331 (12)0.0844 (2)0.0430 (4)
H90.61650.72760.15260.052*
C100.5799 (2)0.75726 (12)−0.0344 (2)0.0508 (5)
H100.63880.7181−0.04650.061*
C110.5044 (3)0.81058 (13)−0.1324 (2)0.0522 (5)
C120.4182 (3)0.86953 (15)−0.1176 (2)0.0576 (6)
H120.36890.9055−0.18560.069*
C130.4060 (2)0.87437 (13)0.00127 (19)0.0472 (5)
H130.34770.91410.01290.057*
C140.5726 (2)0.89431 (11)0.31739 (16)0.0349 (4)
C150.5244 (2)0.96762 (12)0.34201 (19)0.0426 (4)
H150.42590.97910.30440.051*
C160.6209 (3)1.02416 (12)0.4218 (2)0.0522 (5)
H160.58831.07360.43840.063*
C170.7645 (3)1.00628 (13)0.4757 (2)0.0507 (5)
C180.8181 (2)0.93527 (13)0.4525 (2)0.0496 (5)
H180.91710.92510.48970.060*
C190.7207 (2)0.87896 (12)0.37212 (19)0.0419 (4)
H190.75460.83030.35440.050*
U11U22U33U12U13U23
F10.1304 (14)0.0839 (11)0.0563 (9)0.0159 (10)0.0658 (9)0.0004 (7)
F20.0951 (11)0.0602 (9)0.0724 (10)−0.0414 (8)0.0264 (8)−0.0204 (7)
O10.0659 (9)0.0428 (8)0.0519 (8)−0.0214 (7)0.0250 (7)−0.0029 (6)
N10.0530 (9)0.0380 (8)0.0314 (8)−0.0133 (7)0.0170 (7)−0.0030 (6)
N20.0345 (7)0.0299 (7)0.0268 (7)−0.0034 (6)0.0128 (6)−0.0012 (5)
C10.0722 (14)0.0438 (11)0.0454 (11)−0.0056 (10)0.0300 (10)0.0073 (9)
C20.0417 (9)0.0368 (10)0.0405 (10)−0.0024 (8)0.0177 (8)0.0035 (8)
C30.0651 (12)0.0400 (10)0.0374 (10)−0.0168 (9)0.0245 (9)−0.0084 (8)
C40.0477 (10)0.0448 (10)0.0278 (8)−0.0129 (8)0.0143 (8)−0.0043 (7)
C50.0448 (10)0.0348 (9)0.0278 (9)−0.0085 (7)0.0137 (7)−0.0037 (7)
C60.0516 (11)0.0410 (10)0.0305 (9)−0.0107 (8)0.0126 (8)−0.0011 (7)
C70.0355 (8)0.0342 (9)0.0315 (9)0.0023 (7)0.0152 (7)0.0004 (7)
C80.0410 (9)0.0347 (9)0.0334 (9)−0.0048 (7)0.0181 (7)−0.0038 (7)
C90.0492 (11)0.0379 (10)0.0447 (11)0.0022 (8)0.0224 (9)0.0050 (8)
C100.0624 (13)0.0402 (11)0.0652 (14)0.0035 (9)0.0420 (11)−0.0045 (9)
C110.0776 (14)0.0523 (12)0.0429 (11)0.0011 (11)0.0411 (11)−0.0009 (9)
C120.0765 (15)0.0617 (14)0.0387 (11)0.0184 (12)0.0281 (11)0.0106 (10)
C130.0594 (12)0.0488 (11)0.0398 (10)0.0111 (9)0.0271 (9)0.0023 (8)
C140.0449 (9)0.0345 (9)0.0265 (8)−0.0055 (7)0.0161 (7)0.0033 (7)
C150.0501 (11)0.0404 (10)0.0392 (10)0.0029 (8)0.0206 (8)0.0048 (8)
C160.0821 (16)0.0304 (10)0.0503 (12)−0.0004 (10)0.0338 (11)−0.0008 (8)
C170.0689 (14)0.0413 (11)0.0399 (10)−0.0249 (10)0.0207 (10)−0.0024 (8)
C180.0448 (10)0.0541 (12)0.0472 (11)−0.0080 (9)0.0165 (9)0.0082 (9)
C190.0500 (11)0.0349 (10)0.0442 (10)0.0001 (8)0.0232 (9)0.0015 (8)
F1—C111.364 (2)C7—C141.524 (2)
F2—C171.367 (2)C7—C81.530 (2)
O1—C21.227 (2)C7—H70.9800
N1—C21.349 (2)C8—C131.372 (3)
N1—C31.458 (2)C8—C91.381 (3)
N1—C61.465 (2)C9—C101.396 (3)
N2—C41.462 (2)C9—H90.9300
N2—C51.466 (2)C10—C111.365 (3)
N2—C71.467 (2)C10—H100.9300
C1—C21.505 (3)C11—C121.368 (3)
C1—H1A0.9600C12—C131.386 (3)
C1—H1B0.9600C12—H120.9300
C1—H1C0.9600C13—H130.9300
C3—C41.505 (3)C14—C151.378 (3)
C3—H3A0.9700C14—C191.393 (3)
C3—H3B0.9700C15—C161.379 (3)
C4—H4A0.9700C15—H150.9300
C4—H4B0.9700C16—C171.359 (3)
C5—C61.503 (3)C16—H160.9300
C5—H5A0.9700C17—C181.365 (3)
C5—H5B0.9700C18—C191.383 (3)
C6—H6A0.9700C18—H180.9300
C6—H6B0.9700C19—H190.9300
C2—N1—C3119.85 (15)C14—C7—C8109.55 (14)
C2—N1—C6124.48 (15)N2—C7—H7108.2
C3—N1—C6113.10 (15)C14—C7—H7108.2
C4—N2—C5107.26 (13)C8—C7—H7108.2
C4—N2—C7111.08 (13)C13—C8—C9119.04 (17)
C5—N2—C7112.70 (13)C13—C8—C7118.44 (16)
C2—C1—H1A109.5C9—C8—C7122.48 (16)
C2—C1—H1B109.5C8—C9—C10120.84 (18)
H1A—C1—H1B109.5C8—C9—H9119.6
C2—C1—H1C109.5C10—C9—H9119.6
H1A—C1—H1C109.5C11—C10—C9118.04 (18)
H1B—C1—H1C109.5C11—C10—H10121.0
O1—C2—N1121.36 (17)C9—C10—H10121.0
O1—C2—C1121.08 (17)F1—C11—C10118.60 (19)
N1—C2—C1117.55 (16)F1—C11—C12118.8 (2)
N1—C3—C4110.18 (16)C10—C11—C12122.56 (19)
N1—C3—H3A109.6C11—C12—C13118.4 (2)
C4—C3—H3A109.6C11—C12—H12120.8
N1—C3—H3B109.6C13—C12—H12120.8
C4—C3—H3B109.6C8—C13—C12121.12 (19)
H3A—C3—H3B108.1C8—C13—H13119.4
N2—C4—C3111.16 (15)C12—C13—H13119.4
N2—C4—H4A109.4C15—C14—C19118.84 (17)
C3—C4—H4A109.4C15—C14—C7119.82 (17)
N2—C4—H4B109.4C19—C14—C7121.33 (16)
C3—C4—H4B109.4C14—C15—C16120.7 (2)
H4A—C4—H4B108.0C14—C15—H15119.7
N2—C5—C6111.14 (15)C16—C15—H15119.7
N2—C5—H5A109.4C17—C16—C15118.8 (2)
C6—C5—H5A109.4C17—C16—H16120.6
N2—C5—H5B109.4C15—C16—H16120.6
C6—C5—H5B109.4C16—C17—C18122.94 (19)
H5A—C5—H5B108.0C16—C17—F2118.9 (2)
N1—C6—C5111.02 (15)C18—C17—F2118.1 (2)
N1—C6—H6A109.4C17—C18—C19118.0 (2)
C5—C6—H6A109.4C17—C18—H18121.0
N1—C6—H6B109.4C19—C18—H18121.0
C5—C6—H6B109.4C18—C19—C14120.79 (19)
H6A—C6—H6B108.0C18—C19—H19119.6
N2—C7—C14111.23 (13)C14—C19—H19119.6
N2—C7—C8111.40 (14)
C3—N1—C2—O1−2.5 (3)C7—C8—C9—C10−178.25 (18)
C6—N1—C2—O1−163.00 (19)C8—C9—C10—C110.0 (3)
C3—N1—C2—C1178.49 (18)C9—C10—C11—F1−179.4 (2)
C6—N1—C2—C117.9 (3)C9—C10—C11—C120.8 (4)
C2—N1—C3—C4145.48 (18)F1—C11—C12—C13179.4 (2)
C6—N1—C3—C4−51.9 (2)C10—C11—C12—C13−0.8 (4)
C5—N2—C4—C3−62.16 (19)C9—C8—C13—C120.6 (3)
C7—N2—C4—C3174.28 (15)C7—C8—C13—C12178.3 (2)
N1—C3—C4—N258.1 (2)C11—C12—C13—C80.1 (4)
C4—N2—C5—C660.94 (19)N2—C7—C14—C15−124.60 (17)
C7—N2—C5—C6−176.50 (14)C8—C7—C14—C15111.80 (18)
C2—N1—C6—C5−147.07 (18)N2—C7—C14—C1955.1 (2)
C3—N1—C6—C551.2 (2)C8—C7—C14—C19−68.5 (2)
N2—C5—C6—N1−56.0 (2)C19—C14—C15—C16−1.4 (3)
C4—N2—C7—C14172.68 (14)C7—C14—C15—C16178.28 (17)
C5—N2—C7—C1452.28 (18)C14—C15—C16—C170.0 (3)
C4—N2—C7—C8−64.78 (18)C15—C16—C17—C181.3 (3)
C5—N2—C7—C8174.82 (14)C15—C16—C17—F2−178.55 (18)
N2—C7—C8—C13151.90 (17)C16—C17—C18—C19−1.1 (3)
C14—C7—C8—C13−84.6 (2)F2—C17—C18—C19178.75 (18)
N2—C7—C8—C9−30.5 (2)C17—C18—C19—C14−0.4 (3)
C14—C7—C8—C993.0 (2)C15—C14—C19—C181.6 (3)
C13—C8—C9—C10−0.7 (3)C7—C14—C19—C18−178.09 (16)
D—H···AD—HH···AD···AD—H···A
C13—H13···O1i0.932.463.371 (2)167
C15—H15···O1i0.932.553.351 (3)145
C18—H18···F2ii0.932.543.319 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C13—H13⋯O1i 0.932.463.371 (2)167
C15—H15⋯O1i 0.932.553.351 (3)145
C18—H18⋯F2ii 0.932.543.319 (3)142

Symmetry codes: (i) ; (ii) .

  10 in total

1.  Identification of new diamine scaffolds with activity against Mycobacterium tuberculosis.

Authors:  Elena Bogatcheva; Colleen Hanrahan; Boris Nikonenko; Rowena Samala; Ping Chen; Jacqueline Gearhart; Francis Barbosa; Leo Einck; Carol A Nacy; Marina Protopopova
Journal:  J Med Chem       Date:  2006-06-01       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Current awareness of piperazines: pharmacology and toxicology.

Authors:  Simon Elliott
Journal:  Drug Test Anal       Date:  2011-07-11       Impact factor: 3.345

4.  Substituted piperazines as novel dipeptidyl peptidase IV inhibitors.

Authors:  Linda L Brockunier; Jiafang He; Lawrence F Colwell; Bahanu Habulihaz; Huaibing He; Barbara Leiting; Kathryn A Lyons; Frank Marsilio; Reshma A Patel; Yohannes Teffera; Joseph K Wu; Nancy A Thornberry; Ann E Weber; Emma R Parmee
Journal:  Bioorg Med Chem Lett       Date:  2004-09-20       Impact factor: 2.823

5.  4-[Bis(4-fluoro-phen-yl)meth-yl]piperazin-1-ium bis-(trichloro-acetate) 0.4-hydrate.

Authors:  A S Dayananda; H S Yathirajan; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-07

6.  4-[Bis(4-fluoro-phen-yl)meth-yl]piperazin-1-ium 2-hy-droxy-benzoate 2-hy-droxy-benzoic acid monosolvate.

Authors:  A S Dayananda; H S Yathirajan; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-24

7.  4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium picrate.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Alaloor S Dayananda; Hemmige S Yathirajan; Badiadka Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

8.  4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium 2-(2-phenylethyl)benzoate.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Alaloor S Dayananda; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

9.  (E)-1-{4-[Bis(4-fluoro-phen-yl)meth-yl]piperazin-1-yl}-3-(4-eth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Yan Zhong; Xiaoping Zhang; Bin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

10.  1-[Bis(4-fluoro-phen-yl)meth-yl]-4-[2-(2-methyl-phen-oxy)eth-yl]piperazine.

Authors:  Zhao-Hui Dai; Yan Zhong; Bin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
  10 in total
  2 in total

1.  1-[4-(4-Hy-droxy-phen-yl)piperazin-1-yl]ethanone.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; Manpreet Kaur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19

2.  4-[Bis(4-fluoro-phen-yl)meth-yl]-1-[(2E)-3-phenyl-prop-2-en-1-yl]piperazin-1-ium 3-carb-oxy-propano-ate.

Authors:  Channappa N Kavitha; Hemmige S Yathirajan; Badiadka Narayana; Thomas Gerber; Benjamin van Brecht; Richard Betz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-19
  2 in total

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