Literature DB >> 22064439

4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium picrate.

Richard Betz, Thomas Gerber, Eric Hosten, Alaloor S Dayananda, Hemmige S Yathirajan, Badiadka Narayana.   

Abstract

The title compound {systematic name: 4-[bis(4-fluorophenyl)methyl]piperazin-1-ium 2,4,6-tri-nitro-phenolate}, C(17)H(19)F(2)N(2) (+)·C(6)H(2)N(3)O(7) (-), is the picrate salt of a piperazine-supported amine bearing a benzhydryl substituent on one of its N atoms. During co-crystallisation, protonation took place on the N atom of the secondary amine functionality. The non-aromatic six-membered heterocycle adopts a chair conformation. In the crystal, N-H⋯O hydrogen bonds as well as C-H⋯O contacts connect the components into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22064439      PMCID: PMC3201484          DOI: 10.1107/S160053681103580X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of piperazines, see: Brockunier et al. (2004 ▶); Bogatcheva et al. (2006 ▶). For related structures, see: Jasinski et al. (2010 ▶, 2011 ▶); Dutkiewicz et al. (2011 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C17H19F2N2 +·C6H2N3O7 − M = 517.45 Monoclinic, a = 8.9425 (2) Å b = 11.8286 (2) Å c = 23.0922 (4) Å β = 105.720 (1)° V = 2351.27 (8) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 200 K 0.52 × 0.49 × 0.41 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS: Bruker, 2008 ▶) T min = 0.928, T max = 1.000 20823 measured reflections 5842 independent reflections 5041 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.03 5842 reflections 342 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681103580X/hg5090sup1.cif Supplementary material file. DOI: 10.1107/S160053681103580X/hg5090Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103580X/hg5090Isup3.hkl Supplementary material file. DOI: 10.1107/S160053681103580X/hg5090Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H19F2N2+·C6H2N3O7F(000) = 1072
Mr = 517.45Dx = 1.462 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9984 reflections
a = 8.9425 (2) Åθ = 2.5–28.3°
b = 11.8286 (2) ŵ = 0.12 mm1
c = 23.0922 (4) ÅT = 200 K
β = 105.720 (1)°Block, yellow
V = 2351.27 (8) Å30.52 × 0.49 × 0.41 mm
Z = 4
Bruker APEXII CCD diffractometer5842 independent reflections
Radiation source: fine-focus sealed tube5041 reflections with I > 2σ(I)
graphiteRint = 0.013
φ and ω scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS: Bruker, 2008)h = −10→11
Tmin = 0.928, Tmax = 1.000k = −15→13
20823 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.058P)2 + 0.8015P] where P = (Fo2 + 2Fc2)/3
5842 reflections(Δ/σ)max < 0.001
342 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.31 e Å3
xyzUiso*/Ueq
F10.59114 (13)0.42083 (9)0.07691 (4)0.0571 (3)
F2−0.17242 (8)0.30044 (8)0.27076 (4)0.0414 (2)
N10.53229 (10)0.45389 (8)0.34157 (4)0.02357 (19)
N20.77494 (11)0.44880 (8)0.45221 (4)0.02322 (19)
H7210.8435 (19)0.4073 (14)0.4805 (7)0.036 (4)*
H7220.7972 (18)0.5235 (14)0.4633 (7)0.035 (4)*
C10.41152 (13)0.49894 (9)0.28976 (5)0.0243 (2)
H10.40300.58240.29520.029*
C20.49947 (13)0.48107 (10)0.39896 (5)0.0256 (2)
H2A0.39140.45930.39720.031*
H2B0.51040.56350.40640.031*
C30.61166 (12)0.41795 (10)0.44964 (5)0.0252 (2)
H3A0.59020.43700.48840.030*
H3B0.59700.33550.44310.030*
C40.80775 (12)0.43290 (10)0.39261 (5)0.0259 (2)
H4A0.80470.35140.38260.031*
H4B0.91290.46180.39450.031*
C50.68813 (12)0.49562 (10)0.34431 (5)0.0254 (2)
H5A0.69420.57760.35340.030*
H5B0.70980.48440.30490.030*
C110.45589 (13)0.47782 (10)0.23136 (5)0.0255 (2)
C120.48205 (16)0.56737 (11)0.19670 (6)0.0357 (3)
H120.46810.64260.20870.043*
C130.52840 (18)0.54931 (12)0.14453 (6)0.0423 (3)
H130.54650.61110.12100.051*
C140.54715 (16)0.44020 (13)0.12803 (5)0.0369 (3)
C150.51902 (18)0.34899 (12)0.16014 (6)0.0417 (3)
H150.53130.27410.14730.050*
C160.47223 (17)0.36882 (11)0.21181 (6)0.0372 (3)
H160.45090.30650.23430.045*
C210.25510 (12)0.44523 (9)0.28664 (5)0.0241 (2)
C220.24318 (14)0.33552 (10)0.30656 (6)0.0303 (2)
H220.33510.29360.32380.036*
C230.09940 (14)0.28616 (11)0.30173 (6)0.0321 (3)
H230.09170.21150.31580.039*
C24−0.03126 (13)0.34853 (11)0.27601 (5)0.0304 (2)
C25−0.02518 (14)0.45697 (12)0.25579 (6)0.0335 (3)
H25−0.11780.49780.23810.040*
C260.11954 (14)0.50573 (11)0.26174 (5)0.0298 (2)
H260.12600.58130.24870.036*
O10.04838 (9)0.14124 (7)0.02412 (4)0.02909 (18)
O310.31391 (13)0.16472 (9)−0.00959 (5)0.0496 (3)
O320.30392 (17)0.32242 (10)−0.05643 (6)0.0588 (3)
O410.22278 (14)0.65139 (8)0.05559 (5)0.0485 (3)
O420.08126 (16)0.63785 (9)0.11771 (6)0.0578 (3)
O51−0.12687 (16)0.26580 (12)0.15001 (5)0.0641 (4)
O52−0.20063 (15)0.17435 (12)0.06807 (5)0.0598 (4)
N30.27271 (13)0.26325 (9)−0.01814 (5)0.0323 (2)
N40.14537 (14)0.59644 (9)0.08192 (5)0.0380 (3)
N5−0.11622 (13)0.24272 (10)0.10035 (5)0.0349 (2)
C310.07480 (12)0.24316 (9)0.03909 (5)0.0233 (2)
C320.18288 (13)0.31337 (10)0.01940 (5)0.0258 (2)
C330.20463 (14)0.42683 (10)0.03198 (5)0.0284 (2)
H330.27230.47020.01540.034*
C340.12583 (14)0.47641 (10)0.06937 (5)0.0299 (2)
C350.02432 (14)0.41477 (10)0.09322 (5)0.0307 (2)
H35−0.02600.44910.12010.037*
C36−0.00186 (13)0.30330 (10)0.07723 (5)0.0270 (2)
U11U22U33U12U13U23
F10.0726 (6)0.0721 (7)0.0364 (4)0.0016 (5)0.0315 (4)−0.0020 (4)
F20.0245 (4)0.0574 (5)0.0434 (4)−0.0087 (3)0.0112 (3)−0.0072 (4)
N10.0199 (4)0.0306 (5)0.0207 (4)−0.0002 (3)0.0064 (3)0.0021 (3)
N20.0215 (4)0.0250 (5)0.0227 (4)0.0005 (3)0.0052 (3)0.0024 (3)
C10.0248 (5)0.0242 (5)0.0238 (5)0.0009 (4)0.0064 (4)0.0029 (4)
C20.0218 (5)0.0334 (6)0.0230 (5)0.0022 (4)0.0081 (4)0.0020 (4)
C30.0226 (5)0.0306 (5)0.0238 (5)−0.0013 (4)0.0086 (4)0.0034 (4)
C40.0219 (5)0.0315 (6)0.0258 (5)0.0015 (4)0.0090 (4)−0.0003 (4)
C50.0224 (5)0.0311 (6)0.0241 (5)−0.0019 (4)0.0089 (4)0.0024 (4)
C110.0241 (5)0.0297 (5)0.0219 (5)−0.0011 (4)0.0045 (4)0.0023 (4)
C120.0472 (7)0.0301 (6)0.0318 (6)−0.0115 (5)0.0144 (5)−0.0011 (5)
C130.0555 (8)0.0427 (7)0.0331 (6)−0.0150 (6)0.0195 (6)0.0033 (5)
C140.0366 (6)0.0519 (8)0.0244 (5)−0.0009 (6)0.0118 (5)−0.0008 (5)
C150.0556 (8)0.0374 (7)0.0349 (7)0.0105 (6)0.0171 (6)0.0008 (5)
C160.0530 (8)0.0298 (6)0.0321 (6)0.0081 (6)0.0173 (6)0.0077 (5)
C210.0227 (5)0.0270 (5)0.0222 (5)0.0013 (4)0.0054 (4)0.0008 (4)
C220.0242 (5)0.0278 (6)0.0371 (6)0.0017 (4)0.0053 (4)0.0045 (5)
C230.0303 (6)0.0304 (6)0.0359 (6)−0.0034 (5)0.0091 (5)0.0006 (5)
C240.0230 (5)0.0428 (7)0.0267 (5)−0.0046 (5)0.0091 (4)−0.0067 (5)
C250.0243 (5)0.0453 (7)0.0308 (6)0.0085 (5)0.0076 (4)0.0042 (5)
C260.0292 (6)0.0319 (6)0.0292 (5)0.0064 (5)0.0094 (4)0.0058 (4)
O10.0264 (4)0.0238 (4)0.0361 (4)−0.0003 (3)0.0067 (3)−0.0050 (3)
O310.0572 (7)0.0395 (5)0.0658 (7)0.0152 (5)0.0400 (6)0.0056 (5)
O320.0885 (9)0.0463 (6)0.0618 (7)−0.0101 (6)0.0547 (7)0.0002 (5)
O410.0624 (7)0.0266 (5)0.0541 (6)−0.0054 (4)0.0115 (5)0.0024 (4)
O420.0807 (9)0.0339 (5)0.0635 (7)0.0032 (5)0.0279 (6)−0.0179 (5)
O510.0808 (9)0.0832 (9)0.0408 (6)−0.0316 (7)0.0379 (6)−0.0244 (6)
O520.0595 (7)0.0789 (8)0.0511 (6)−0.0385 (6)0.0324 (5)−0.0295 (6)
N30.0350 (5)0.0328 (5)0.0340 (5)−0.0041 (4)0.0176 (4)−0.0032 (4)
N40.0454 (6)0.0256 (5)0.0375 (6)0.0030 (4)0.0016 (5)−0.0041 (4)
N50.0383 (6)0.0413 (6)0.0293 (5)−0.0061 (5)0.0162 (4)−0.0088 (4)
C310.0234 (5)0.0244 (5)0.0208 (5)0.0014 (4)0.0038 (4)−0.0010 (4)
C320.0263 (5)0.0277 (5)0.0239 (5)0.0007 (4)0.0078 (4)−0.0014 (4)
C330.0295 (5)0.0268 (5)0.0272 (5)−0.0020 (4)0.0045 (4)0.0011 (4)
C340.0345 (6)0.0227 (5)0.0287 (5)0.0015 (4)0.0019 (4)−0.0036 (4)
C350.0335 (6)0.0321 (6)0.0255 (5)0.0033 (5)0.0064 (4)−0.0067 (4)
C360.0277 (5)0.0315 (6)0.0223 (5)−0.0015 (4)0.0078 (4)−0.0036 (4)
F1—C141.3610 (14)C15—H150.9500
F2—C241.3597 (13)C16—H160.9500
N1—C51.4636 (13)C21—C221.3905 (16)
N1—C21.4686 (13)C21—C261.3909 (15)
N1—C11.4770 (14)C22—C231.3888 (17)
N2—C31.4906 (14)C22—H220.9500
N2—C41.4947 (14)C23—C241.3734 (18)
N2—H7210.909 (17)C23—H230.9500
N2—H7220.926 (16)C24—C251.3711 (19)
C1—C211.5202 (15)C25—C261.3893 (18)
C1—C111.5258 (15)C25—H250.9500
C1—H11.0000C26—H260.9500
C2—C31.5158 (15)O1—C311.2587 (13)
C2—H2A0.9900O31—N31.2221 (15)
C2—H2B0.9900O32—N31.2179 (14)
C3—H3A0.9900O41—N41.2245 (16)
C3—H3B0.9900O42—N41.2282 (16)
C4—C51.5140 (15)O51—N51.2073 (14)
C4—H4A0.9900O52—N51.2143 (15)
C4—H4B0.9900N3—C321.4580 (14)
C5—H5A0.9900N4—C341.4501 (15)
C5—H5B0.9900N5—C361.4630 (15)
C11—C121.3854 (16)C31—C321.4383 (15)
C11—C161.3869 (17)C31—C361.4418 (15)
C12—C131.3926 (18)C32—C331.3757 (16)
C12—H120.9500C33—C341.3841 (17)
C13—C141.369 (2)C33—H330.9500
C13—H130.9500C34—C351.3891 (18)
C14—C151.370 (2)C35—C361.3721 (17)
C15—C161.3870 (18)C35—H350.9500
C5—N1—C2107.93 (8)C14—C15—C16118.33 (13)
C5—N1—C1113.08 (8)C14—C15—H15120.8
C2—N1—C1111.77 (8)C16—C15—H15120.8
C3—N2—C4111.54 (8)C11—C16—C15121.35 (12)
C3—N2—H721111.0 (10)C11—C16—H16119.3
C4—N2—H721109.4 (10)C15—C16—H16119.3
C3—N2—H722112.3 (10)C22—C21—C26118.73 (11)
C4—N2—H722107.0 (10)C22—C21—C1121.76 (10)
H721—N2—H722105.3 (14)C26—C21—C1119.49 (10)
N1—C1—C21110.43 (8)C23—C22—C21121.20 (11)
N1—C1—C11110.40 (9)C23—C22—H22119.4
C21—C1—C11110.24 (9)C21—C22—H22119.4
N1—C1—H1108.6C24—C23—C22118.01 (12)
C21—C1—H1108.6C24—C23—H23121.0
C11—C1—H1108.6C22—C23—H23121.0
N1—C2—C3109.67 (9)F2—C24—C25118.85 (11)
N1—C2—H2A109.7F2—C24—C23118.32 (12)
C3—C2—H2A109.7C25—C24—C23122.84 (11)
N1—C2—H2B109.7C24—C25—C26118.46 (11)
C3—C2—H2B109.7C24—C25—H25120.8
H2A—C2—H2B108.2C26—C25—H25120.8
N2—C3—C2110.27 (9)C25—C26—C21120.76 (11)
N2—C3—H3A109.6C25—C26—H26119.6
C2—C3—H3A109.6C21—C26—H26119.6
N2—C3—H3B109.6O32—N3—O31123.16 (11)
C2—C3—H3B109.6O32—N3—C32118.00 (11)
H3A—C3—H3B108.1O31—N3—C32118.83 (10)
N2—C4—C5109.93 (9)O41—N4—O42123.52 (12)
N2—C4—H4A109.7O41—N4—C34118.30 (11)
C5—C4—H4A109.7O42—N4—C34118.16 (12)
N2—C4—H4B109.7O51—N5—O52122.53 (12)
C5—C4—H4B109.7O51—N5—C36118.60 (11)
H4A—C4—H4B108.2O52—N5—C36118.81 (10)
N1—C5—C4109.94 (9)O1—C31—C32123.95 (10)
N1—C5—H5A109.7O1—C31—C36123.74 (10)
C4—C5—H5A109.7C32—C31—C36112.31 (10)
N1—C5—H5B109.7C33—C32—C31124.42 (10)
C4—C5—H5B109.7C33—C32—N3116.94 (10)
H5A—C5—H5B108.2C31—C32—N3118.60 (10)
C12—C11—C16118.26 (11)C32—C33—C34118.57 (11)
C12—C11—C1120.70 (11)C32—C33—H33120.7
C16—C11—C1121.04 (10)C34—C33—H33120.7
C11—C12—C13121.27 (12)C33—C34—C35121.51 (11)
C11—C12—H12119.4C33—C34—N4119.03 (11)
C13—C12—H12119.4C35—C34—N4119.41 (11)
C14—C13—C12118.23 (12)C36—C35—C34118.68 (11)
C14—C13—H13120.9C36—C35—H35120.7
C12—C13—H13120.9C34—C35—H35120.7
F1—C14—C13119.08 (12)C35—C36—C31124.32 (11)
F1—C14—C15118.38 (13)C35—C36—N5117.23 (10)
C13—C14—C15122.51 (12)C31—C36—N5118.45 (10)
C5—N1—C1—C21175.43 (9)C22—C23—C24—C25−0.79 (19)
C2—N1—C1—C21−62.52 (11)F2—C24—C25—C26179.53 (11)
C5—N1—C1—C1153.26 (12)C23—C24—C25—C26−0.13 (18)
C2—N1—C1—C11175.31 (9)C24—C25—C26—C211.15 (18)
C5—N1—C2—C3−63.90 (11)C22—C21—C26—C25−1.20 (17)
C1—N1—C2—C3171.15 (9)C1—C21—C26—C25177.04 (11)
C4—N2—C3—C2−53.24 (12)O1—C31—C32—C33175.18 (11)
N1—C2—C3—N258.60 (12)C36—C31—C32—C33−3.91 (16)
C3—N2—C4—C553.23 (12)O1—C31—C32—N3−2.65 (17)
C2—N1—C5—C464.26 (11)C36—C31—C32—N3178.26 (10)
C1—N1—C5—C4−171.57 (9)O32—N3—C32—C33−32.04 (17)
N2—C4—C5—N1−58.93 (12)O31—N3—C32—C33147.48 (12)
N1—C1—C11—C12−116.94 (12)O32—N3—C32—C31145.96 (12)
C21—C1—C11—C12120.78 (12)O31—N3—C32—C31−34.53 (17)
N1—C1—C11—C1662.58 (14)C31—C32—C33—C344.57 (18)
C21—C1—C11—C16−59.70 (14)N3—C32—C33—C34−177.56 (10)
C16—C11—C12—C13−2.0 (2)C32—C33—C34—C35−1.18 (18)
C1—C11—C12—C13177.51 (12)C32—C33—C34—N4−178.72 (11)
C11—C12—C13—C140.2 (2)O41—N4—C34—C334.97 (17)
C12—C13—C14—F1179.46 (13)O42—N4—C34—C33−176.16 (12)
C12—C13—C14—C151.4 (2)O41—N4—C34—C35−172.63 (12)
F1—C14—C15—C16−179.17 (13)O42—N4—C34—C356.24 (18)
C13—C14—C15—C16−1.1 (2)C33—C34—C35—C36−2.44 (18)
C12—C11—C16—C152.3 (2)N4—C34—C35—C36175.09 (11)
C1—C11—C16—C15−177.19 (12)C34—C35—C36—C313.01 (18)
C14—C15—C16—C11−0.8 (2)C34—C35—C36—N5−176.52 (11)
N1—C1—C21—C22−30.91 (14)O1—C31—C36—C35−179.08 (11)
C11—C1—C21—C2291.36 (12)C32—C31—C36—C350.01 (16)
N1—C1—C21—C26150.90 (10)O1—C31—C36—N50.44 (17)
C11—C1—C21—C26−86.83 (12)C32—C31—C36—N5179.53 (10)
C26—C21—C22—C230.24 (18)O51—N5—C36—C35−34.90 (18)
C1—C21—C22—C23−177.96 (11)O52—N5—C36—C35142.36 (14)
C21—C22—C23—C240.73 (19)O51—N5—C36—C31145.55 (14)
C22—C23—C24—F2179.55 (11)O52—N5—C36—C31−37.19 (18)
D—H···AD—HH···AD···AD—H···A
N2—H721···O1i0.909 (17)1.924 (17)2.7696 (12)154.0 (14)
N2—H721···O52i0.909 (17)2.369 (16)3.0018 (14)126.7 (12)
N2—H722···O1ii0.926 (16)1.927 (16)2.7402 (13)145.4 (14)
N2—H722···O31ii0.926 (16)2.345 (16)3.0791 (15)136.0 (13)
C3—H3A···O52i0.992.603.0002 (16)104.
C13—H13···O32iii0.952.393.2159 (16)145.
C23—H23···O42iv0.952.613.2827 (17)129.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H721⋯O1i0.909 (17)1.924 (17)2.7696 (12)154.0 (14)
N2—H721⋯O52i0.909 (17)2.369 (16)3.0018 (14)126.7 (12)
N2—H722⋯O1ii0.926 (16)1.927 (16)2.7402 (13)145.4 (14)
N2—H722⋯O31ii0.926 (16)2.345 (16)3.0791 (15)136.0 (13)
C3—H3A⋯O52i0.992.603.0002 (16)104
C13—H13⋯O32iii0.952.393.2159 (16)145
C23—H23⋯O42iv0.952.613.2827 (17)129

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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