Literature DB >> 22798821

2-{(E)-[(3-Iodo-4-methyl-phen-yl)imino]-meth-yl}-4-(trifluoro-meth-oxy)phenol.

Merve Pekdemir, Samil Işık, Ayşen Alaman Ağar.   

Abstract

The title compound, C(15)H(11)F(3)INO(2), adopts the enol-imine tautomeric form. The mol-ecule displays an E conformation with respect to the imine C=N double bond. The dihedral angle between the two benzene rings is 12.4 (2)°. The mol-ecular conformation is stabilized by an intra-molecular O-H⋯N hydrogen bond, which generates an S(6) ring motif. The trifluoro-meth-oxy-phenyl group is disordered over two sites with an occupancy ratio of 0.621 (6):0.379 (6). The crystal structure features C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22798821      PMCID: PMC3393956          DOI: 10.1107/S1600536812026876

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For generic history to the use of Schiff bases and their biological activity, see: Tarafder et al. (2002 ▶); Cukurovali et al. (2002 ▶); Ali et al. (2002 ▶). Schiff base compounds can be classified by their photochromic and thermochromic characteristics, see: Alarcon et al. (1999 ▶); Cohen et al. (1964 ▶); Gül et al. (2007 ▶); Hadjoudis et al. (1987 ▶); Şahin et al. (2005 ▶); Xu et al. (1994 ▶). For related structures, see: Ağar et al. 2010 ▶); Ceylan et al. (2011 ▶); Demirtaş et al. (2009) ▶; Tecer et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H11F3INO2 M = 421.15 Triclinic, a = 4.6733 (3) Å b = 6.6441 (5) Å c = 25.2825 (19) Å α = 86.970 (6)° β = 86.386 (6)° γ = 78.087 (5)° V = 765.95 (10) Å3 Z = 2 Mo Kα radiation μ = 2.13 mm−1 T = 296 K 0.80 × 0.38 × 0.10 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.389, T max = 0.833 9671 measured reflections 3237 independent reflections 2806 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.107 S = 1.04 3237 reflections 198 parameters 38 restraints H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.58 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812026876/lr2067sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026876/lr2067Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812026876/lr2067Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H11F3INO2Z = 2
Mr = 421.15F(000) = 408
Triclinic, P1Dx = 1.826 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.6733 (3) ÅCell parameters from 18957 reflections
b = 6.6441 (5) Åθ = 1.6–27.3°
c = 25.2825 (19) ŵ = 2.13 mm1
α = 86.970 (6)°T = 296 K
β = 86.386 (6)°PLATE, yellow
γ = 78.087 (5)°0.80 × 0.38 × 0.10 mm
V = 765.95 (10) Å3
Stoe IPDS 2 diffractometer3237 independent reflections
Radiation source: fine-focus sealed tube2806 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.066
Detector resolution: 6.67 pixels mm-1θmax = 26.8°, θmin = 1.6°
rotation method scansh = −5→5
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −8→8
Tmin = 0.389, Tmax = 0.833l = −31→31
9671 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0721P)2 + 0.1093P] where P = (Fo2 + 2Fc2)/3
3237 reflections(Δ/σ)max = 0.002
198 parametersΔρmax = 0.71 e Å3
38 restraintsΔρmin = −0.58 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C150.9104 (9)0.8097 (7)0.57659 (18)0.0655 (10)
H15A0.99690.66850.58490.098*
H15B1.05660.89210.57700.098*
H15C0.83330.82110.54200.098*
C14−0.6844 (15)0.7327 (12)0.9450 (2)0.0967 (18)
I10.59478 (6)1.29948 (4)0.557019 (11)0.06978 (14)
O1−0.3927 (8)1.3987 (4)0.77435 (14)0.0774 (9)
H1−0.25811.34290.75440.116*
N1−0.0211 (6)1.0922 (4)0.73088 (12)0.0511 (6)
C10.5067 (7)1.0843 (5)0.61658 (13)0.0487 (7)
C50.2116 (7)1.0139 (5)0.69393 (13)0.0491 (7)
C60.2828 (7)1.1499 (5)0.65460 (14)0.0498 (7)
H60.18081.28580.65350.060*
O2−0.8277 (7)0.8215 (5)0.90303 (13)0.0752 (8)
C30.5939 (8)0.7512 (5)0.65756 (16)0.0578 (8)
H30.69840.61600.65930.069*
C13−0.1359 (8)0.9712 (5)0.76217 (14)0.0528 (7)
H13−0.06550.83010.76010.063*
C7−0.3726 (7)1.0436 (5)0.80106 (14)0.0501 (7)
C40.3711 (8)0.8124 (6)0.69536 (15)0.0566 (8)
H40.32760.71900.72180.068*
C12−0.4914 (8)1.2548 (6)0.80557 (15)0.0575 (8)
C8−0.4832 (8)0.9026 (6)0.83407 (16)0.0563 (8)
H8−0.40790.76260.83090.068*
C20.6688 (7)0.8836 (5)0.61677 (15)0.0520 (7)
C10−0.8238 (10)1.1762 (8)0.87578 (19)0.0725 (11)
H10−0.97501.21980.90090.087*
C9−0.7043 (8)0.9682 (6)0.87166 (15)0.0602 (9)
C11−0.7204 (10)1.3145 (7)0.8433 (2)0.0716 (11)
H11−0.80341.45360.84610.086*
F1A−0.830 (2)0.6351 (14)0.9751 (3)0.1137 (11)0.621 (6)
F2A−0.4368 (18)0.5983 (14)0.9256 (3)0.1137 (11)0.621 (6)
F3A−0.5481 (19)0.8352 (13)0.9714 (3)0.1137 (11)0.621 (6)
F1B−0.818 (4)0.571 (2)0.9597 (5)0.1137 (11)0.379 (6)
F2B−0.428 (3)0.704 (2)0.9445 (5)0.1137 (11)0.379 (6)
F3B−0.758 (3)0.8901 (18)0.9804 (4)0.1137 (11)0.379 (6)
U11U22U33U12U13U23
C150.057 (2)0.064 (2)0.072 (2)−0.0052 (17)0.0091 (18)−0.0137 (19)
C140.102 (4)0.128 (5)0.074 (3)−0.062 (4)−0.007 (3)0.026 (3)
I10.0703 (2)0.0657 (2)0.0686 (2)−0.01119 (13)0.01306 (13)0.00966 (13)
O10.088 (2)0.0503 (14)0.083 (2)0.0003 (13)0.0198 (16)0.0101 (14)
N10.0505 (14)0.0500 (14)0.0493 (14)−0.0040 (12)0.0000 (12)0.0015 (12)
C10.0473 (16)0.0482 (15)0.0500 (16)−0.0087 (13)−0.0021 (13)−0.0008 (13)
C50.0475 (16)0.0483 (16)0.0497 (17)−0.0050 (13)−0.0039 (13)−0.0014 (13)
C60.0476 (16)0.0457 (15)0.0530 (17)−0.0029 (13)−0.0019 (13)−0.0002 (13)
O20.0662 (16)0.091 (2)0.0705 (18)−0.0272 (15)−0.0008 (14)0.0153 (16)
C30.0545 (19)0.0446 (16)0.068 (2)0.0029 (14)−0.0012 (16)−0.0029 (15)
C130.0545 (18)0.0483 (16)0.0541 (18)−0.0072 (14)−0.0030 (14)−0.0010 (14)
C70.0473 (16)0.0506 (16)0.0507 (17)−0.0072 (13)−0.0030 (13)0.0020 (13)
C40.0569 (19)0.0497 (17)0.058 (2)−0.0016 (15)0.0014 (15)0.0063 (15)
C120.061 (2)0.0515 (17)0.0570 (19)−0.0071 (15)0.0012 (16)0.0032 (15)
C80.0537 (18)0.0540 (18)0.060 (2)−0.0086 (15)−0.0038 (15)0.0040 (15)
C20.0444 (16)0.0538 (17)0.0559 (18)−0.0045 (14)−0.0021 (14)−0.0085 (15)
C100.064 (2)0.082 (3)0.067 (2)−0.008 (2)0.0115 (19)−0.009 (2)
C90.0553 (19)0.072 (2)0.0546 (19)−0.0175 (17)−0.0003 (15)0.0035 (17)
C110.068 (2)0.061 (2)0.079 (3)0.0028 (18)0.010 (2)−0.009 (2)
F1A0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
F2A0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
F3A0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
F1B0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
F2B0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
F3B0.1195 (19)0.136 (3)0.090 (2)−0.043 (2)−0.010 (2)0.0223 (18)
C15—C21.492 (5)C5—C41.391 (5)
C15—H15A0.9600C6—H60.9300
C15—H15B0.9600O2—C91.415 (5)
C15—H15C0.9600C3—C41.380 (5)
C14—F2B1.174 (16)C3—C21.395 (6)
C14—F1A1.236 (10)C3—H30.9300
C14—F3A1.263 (10)C13—C71.454 (5)
C14—O21.336 (7)C13—H130.9300
C14—F1B1.371 (16)C7—C81.380 (5)
C14—F3B1.387 (12)C7—C121.406 (5)
C14—F2A1.387 (10)C4—H40.9300
I1—C12.102 (3)C12—C111.396 (6)
O1—C121.344 (5)C8—C91.377 (6)
O1—H10.8200C8—H80.9300
N1—C131.272 (5)C10—C111.343 (7)
N1—C51.420 (4)C10—C91.386 (6)
C1—C21.391 (5)C10—H100.9300
C1—C61.392 (5)C11—H110.9300
C5—C61.379 (5)
C2—C15—H15A109.5C5—C6—C1120.2 (3)
C2—C15—H15B109.5C5—C6—H6119.9
H15A—C15—H15B109.5C1—C6—H6119.9
C2—C15—H15C109.5C14—O2—C9117.8 (4)
H15A—C15—H15C109.5C4—C3—C2122.7 (3)
H15B—C15—H15C109.5C4—C3—H3118.6
F2B—C14—F1A122.8 (10)C2—C3—H3118.6
F2B—C14—F3A56.8 (8)N1—C13—C7122.9 (3)
F1A—C14—F3A110.3 (7)N1—C13—H13118.6
F2B—C14—O2120.6 (8)C7—C13—H13118.6
F1A—C14—O2113.4 (6)C8—C7—C12119.4 (3)
F3A—C14—O2119.7 (6)C8—C7—C13119.4 (3)
F2B—C14—F1B118.3 (11)C12—C7—C13121.2 (3)
F1A—C14—F1B25.2 (7)C3—C4—C5120.0 (3)
F3A—C14—F1B131.3 (8)C3—C4—H4120.0
O2—C14—F1B103.9 (7)C5—C4—H4120.0
F2B—C14—F3B100.5 (10)O1—C12—C11119.7 (4)
F1A—C14—F3B86.9 (7)O1—C12—C7121.9 (3)
F3A—C14—F3B43.6 (6)C11—C12—C7118.4 (4)
O2—C14—F3B100.3 (7)C9—C8—C7120.3 (4)
F1B—C14—F3B111.8 (9)C9—C8—H8119.8
F2B—C14—F2A39.0 (8)C7—C8—H8119.8
F1A—C14—F2A108.9 (8)C1—C2—C3115.9 (3)
F3A—C14—F2A95.7 (7)C1—C2—C15123.3 (4)
O2—C14—F2A106.9 (6)C3—C2—C15120.7 (3)
F1B—C14—F2A90.9 (9)C11—C10—C9119.7 (4)
F3B—C14—F2A139.0 (8)C11—C10—H10120.1
C12—O1—H1109.5C9—C10—H10120.1
C13—N1—C5120.7 (3)C8—C9—C10120.4 (4)
C2—C1—C6122.3 (3)C8—C9—O2119.7 (4)
C2—C1—I1119.9 (3)C10—C9—O2119.7 (4)
C6—C1—I1117.8 (2)C10—C11—C12121.7 (4)
C6—C5—C4118.8 (3)C10—C11—H11119.1
C6—C5—N1116.8 (3)C12—C11—H11119.1
C4—C5—N1124.4 (3)
C13—N1—C5—C6167.1 (3)C8—C7—C12—C11−0.5 (6)
C13—N1—C5—C4−13.6 (5)C13—C7—C12—C11179.3 (4)
C4—C5—C6—C11.2 (5)C12—C7—C8—C9−1.1 (6)
N1—C5—C6—C1−179.4 (3)C13—C7—C8—C9179.1 (3)
C2—C1—C6—C5−0.9 (5)C6—C1—C2—C3−0.1 (5)
I1—C1—C6—C5178.6 (2)I1—C1—C2—C3−179.6 (3)
F2B—C14—O2—C9−31.7 (14)C6—C1—C2—C15−179.8 (3)
F1A—C14—O2—C9168.1 (7)I1—C1—C2—C150.7 (5)
F3A—C14—O2—C935.1 (10)C4—C3—C2—C10.7 (6)
F1B—C14—O2—C9−167.2 (8)C4—C3—C2—C15−179.6 (4)
F3B—C14—O2—C977.1 (7)C7—C8—C9—C101.8 (6)
F2A—C14—O2—C9−71.9 (7)C7—C8—C9—O2176.2 (3)
C5—N1—C13—C7179.4 (3)C11—C10—C9—C8−0.9 (7)
N1—C13—C7—C8−179.2 (3)C11—C10—C9—O2−175.2 (4)
N1—C13—C7—C121.0 (5)C14—O2—C9—C881.3 (6)
C2—C3—C4—C5−0.3 (6)C14—O2—C9—C10−104.3 (6)
C6—C5—C4—C3−0.7 (5)C9—C10—C11—C12−0.7 (8)
N1—C5—C4—C3−180.0 (3)O1—C12—C11—C10−179.3 (4)
C8—C7—C12—O1−179.8 (4)C7—C12—C11—C101.4 (7)
C13—C7—C12—O10.0 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.902.628 (4)147
C15—H15B···Cgi0.962.853.570 (5)133
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.821.902.628 (4)147
C15—H15BCg i 0.962.853.570 (5)133

Symmetry code: (i) .

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Authors:  Güneş Demirtaş; Necmi Dege; Memet Sekerci; Süleyman Servi; Muharrem Dinçer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

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Authors:  Elif Tecer; Necmi Dege; Ayşin Zülfikaroğlu; Nuray Senyüz; Hümeyra Batı
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1.  (E)-(2,5-Difluoro-benz-yl)[(2-eth-oxy-naphthalen-1-yl)methyl-idene]amine.

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