Literature DB >> 21582928

(E)-5-Phenyl-N-(2-thienylmethyl-ene)-1,3,4-thia-diazole-2-amine.

Güneş Demirtaş, Necmi Dege, Memet Sekerci, Süleyman Servi, Muharrem Dinçer.   

Abstract

In the title compound, C(13)H(9)N(3)S(2), the n class="Chemical">thio-phene and phenyl rings are oriented at dihedral angles of 8.00 (7) and 6.31 (7)°, respectively, with respect to the central thia-diazole ring. No significant C-H⋯S and π-π inter-actions exist in the crystal structure.

Entities:  

Year:  2009        PMID: 21582928      PMCID: PMC2969456          DOI: 10.1107/S1600536809023447

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of [1,3,4]-thia­diazole-containing compounds, see: Foroumadi, Soltani et al. (2003 ▶); Foroumadi, Mansouri et al. (2003 ▶); Holla et al. (2002 ▶); Genc & Servi (2005 ▶); Servi et al. (2005 ▶). For a related structure, see: Dege et al. (2006 ▶).

Experimental

Crystal data

C13H9N3S2 M = 271.35 Monoclinic, a = 6.2238 (3) Å b = 7.7393 (3) Å c = 25.6959 (13) Å β = 94.701 (4)° V = 1233.55 (10) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.74 × 0.48 × 0.16 mm

Data collection

Stoe IPDS-2 diffractometer Absorption correction: integration (X-RED; Stoe & Cie, 2002 ▶) T min = 0.815, T max = 0.943 10930 measured reflections 2619 independent reflections 2275 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.080 S = 1.05 2619 reflections 176 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809023447/ci2829sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023447/ci2829Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9N3S2F(000) = 560
Mr = 271.35Dx = 1.461 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 17067 reflections
a = 6.2238 (3) Åθ = 1.6–26.8°
b = 7.7393 (3) ŵ = 0.41 mm1
c = 25.6959 (13) ÅT = 293 K
β = 94.701 (4)°Plate, yellow
V = 1233.55 (10) Å30.74 × 0.48 × 0.16 mm
Z = 4
Stoe IPDS-2 diffractometer2619 independent reflections
Radiation source: fine-focus sealed tube2275 reflections with I > 2σ(I)
plane graphiteRint = 0.020
Detector resolution: 6.67 pixels mm-1θmax = 26.8°, θmin = 1.6°
ω scansh = −7→7
Absorption correction: integration (X-RED; Stoe & Cie, 2002)k = −9→9
Tmin = 0.815, Tmax = 0.943l = −32→32
10930 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0481P)2 + 0.1148P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2619 reflectionsΔρmax = 0.18 e Å3
176 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.002634 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0290 (2)0.1603 (2)0.57838 (6)0.0543 (3)
C20.0105 (3)0.0893 (2)0.62710 (6)0.0615 (4)
H20.13110.08170.65090.074*
C3−0.1859 (3)0.0297 (2)0.64059 (6)0.0621 (4)
H3−0.1976−0.01900.67330.075*
C4−0.3643 (2)0.0422 (2)0.60563 (6)0.0627 (4)
H4−0.49670.00140.61470.075*
C5−0.3479 (2)0.1152 (2)0.55709 (6)0.0565 (3)
H5−0.46980.12470.53380.068*
C6−0.1503 (2)0.17452 (16)0.54281 (5)0.0461 (3)
C7−0.13539 (19)0.24791 (17)0.49053 (5)0.0466 (3)
C8−0.0473 (2)0.36506 (18)0.40911 (5)0.0500 (3)
C90.2276 (2)0.46866 (18)0.36247 (5)0.0500 (3)
C100.3030 (2)0.55163 (17)0.31753 (5)0.0480 (3)
C110.3279 (3)0.7018 (2)0.23422 (6)0.0643 (4)
H110.30780.75410.20160.077*
C120.5205 (3)0.6920 (2)0.26256 (7)0.0631 (4)
C130.5080 (2)0.60554 (18)0.31021 (6)0.0547 (3)
H130.62590.58690.33420.066*
N1−0.30366 (19)0.27346 (19)0.45777 (5)0.0656 (4)
N2−0.25288 (19)0.3405 (2)0.41099 (5)0.0674 (4)
N30.02776 (18)0.43483 (15)0.36467 (4)0.0530 (3)
S10.10458 (5)0.30465 (5)0.466131 (13)0.04910 (12)
S20.12673 (6)0.60757 (5)0.265024 (14)0.06061 (14)
H90.333 (3)0.444 (2)0.3905 (6)0.065 (4)*
H10.158 (3)0.206 (2)0.5694 (7)0.071 (5)*
H120.645 (3)0.736 (3)0.2497 (8)0.086 (6)*
U11U22U33U12U13U23
C10.0472 (7)0.0616 (8)0.0537 (7)−0.0008 (6)0.0013 (6)−0.0007 (6)
C20.0579 (8)0.0733 (10)0.0520 (8)0.0033 (7)−0.0038 (6)0.0016 (7)
C30.0714 (9)0.0656 (9)0.0502 (8)0.0040 (7)0.0103 (7)0.0006 (7)
C40.0557 (8)0.0725 (10)0.0617 (9)−0.0027 (7)0.0151 (7)−0.0015 (7)
C50.0455 (7)0.0690 (9)0.0549 (8)0.0005 (6)0.0033 (6)−0.0047 (7)
C60.0460 (6)0.0435 (7)0.0486 (6)0.0036 (5)0.0032 (5)−0.0061 (5)
C70.0425 (6)0.0452 (6)0.0516 (7)0.0016 (5)0.0007 (5)−0.0035 (5)
C80.0466 (7)0.0514 (7)0.0509 (7)0.0011 (5)−0.0026 (5)0.0001 (6)
C90.0513 (7)0.0494 (7)0.0483 (7)0.0046 (6)−0.0021 (5)−0.0003 (6)
C100.0496 (7)0.0469 (7)0.0467 (7)0.0051 (5)−0.0010 (5)−0.0019 (5)
C110.0729 (10)0.0655 (9)0.0537 (8)−0.0013 (7)0.0004 (7)0.0108 (7)
C120.0590 (8)0.0636 (10)0.0670 (9)−0.0037 (7)0.0073 (7)0.0085 (7)
C130.0503 (7)0.0552 (8)0.0576 (8)0.0031 (6)−0.0020 (6)0.0031 (6)
N10.0443 (6)0.0864 (9)0.0647 (8)−0.0049 (6)−0.0039 (5)0.0167 (7)
N20.0479 (6)0.0901 (10)0.0622 (7)−0.0051 (6)−0.0068 (5)0.0208 (7)
N30.0518 (6)0.0564 (7)0.0499 (6)−0.0003 (5)−0.0009 (5)0.0045 (5)
S10.04071 (18)0.0581 (2)0.04783 (19)0.00331 (13)−0.00016 (12)0.00054 (14)
S20.0538 (2)0.0724 (3)0.0536 (2)−0.00062 (16)−0.00781 (15)0.00514 (17)
C1—C21.381 (2)C8—N31.3787 (18)
C1—C61.3875 (19)C8—S11.7411 (13)
C1—H10.923 (18)C9—N31.2770 (18)
C2—C31.377 (2)C9—C101.4335 (19)
C2—H20.93C9—H90.952 (16)
C3—C41.374 (2)C10—C131.3697 (19)
C3—H30.93C10—S21.7229 (13)
C4—C51.380 (2)C11—C121.353 (2)
C4—H40.93C11—S21.6993 (17)
C5—C61.3900 (19)C11—H110.93
C5—H50.93C12—C131.403 (2)
C6—C71.4684 (19)C12—H120.929 (19)
C7—N11.3039 (17)C13—H130.93
C7—S11.7234 (13)N1—N21.3696 (19)
C8—N21.2987 (18)
C2—C1—C6120.44 (14)N2—C8—S1113.44 (11)
C2—C1—H1121.1 (12)N3—C8—S1127.22 (10)
C6—C1—H1118.3 (11)N3—C9—C10120.78 (12)
C3—C2—C1120.20 (14)N3—C9—H9122.7 (10)
C3—C2—H2119.9C10—C9—H9116.5 (10)
C1—C2—H2119.9C13—C10—C9128.09 (12)
C4—C3—C2119.90 (14)C13—C10—S2110.88 (10)
C4—C3—H3120.0C9—C10—S2120.94 (10)
C2—C3—H3120.0C12—C11—S2112.30 (12)
C3—C4—C5120.28 (14)C12—C11—H11123.9
C3—C4—H4119.9S2—C11—H11123.9
C5—C4—H4119.9C11—C12—C13112.73 (14)
C4—C5—C6120.40 (14)C11—C12—H12121.0 (13)
C4—C5—H5119.8C13—C12—H12126.3 (13)
C6—C5—H5119.8C10—C13—C12112.57 (13)
C1—C6—C5118.77 (13)C10—C13—H13123.7
C1—C6—C7121.70 (12)C12—C13—H13123.7
C5—C6—C7119.53 (12)C7—N1—N2113.15 (12)
N1—C7—C6122.79 (12)C8—N2—N1112.78 (12)
N1—C7—S1113.62 (11)C9—N3—C8120.94 (12)
C6—C7—S1123.58 (9)C7—S1—C887.01 (6)
N2—C8—N3119.33 (12)C11—S2—C1091.51 (7)
C6—C1—C2—C30.9 (2)C11—C12—C13—C10−0.5 (2)
C1—C2—C3—C4−0.5 (2)C6—C7—N1—N2−179.04 (13)
C2—C3—C4—C5−0.3 (2)S1—C7—N1—N2−0.15 (18)
C3—C4—C5—C60.9 (2)N3—C8—N2—N1−178.89 (13)
C2—C1—C6—C5−0.3 (2)S1—C8—N2—N10.45 (19)
C2—C1—C6—C7−179.40 (13)C7—N1—N2—C8−0.2 (2)
C4—C5—C6—C1−0.6 (2)C10—C9—N3—C8−175.86 (12)
C4—C5—C6—C7178.55 (14)N2—C8—N3—C9176.50 (15)
C1—C6—C7—N1−175.17 (14)S1—C8—N3—C9−2.7 (2)
C5—C6—C7—N15.7 (2)N1—C7—S1—C80.32 (12)
C1—C6—C7—S16.05 (19)C6—C7—S1—C8179.20 (12)
C5—C6—C7—S1−173.02 (11)N2—C8—S1—C7−0.44 (13)
N3—C9—C10—C13175.89 (14)N3—C8—S1—C7178.84 (13)
N3—C9—C10—S2−0.24 (19)C12—C11—S2—C10−0.24 (14)
S2—C11—C12—C130.5 (2)C13—C10—S2—C11−0.04 (12)
C9—C10—C13—C12−176.14 (14)C9—C10—S2—C11176.70 (12)
S2—C10—C13—C120.30 (17)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The synthesis and antimicrobial activity of some new methyl N-arylthiocarbamates, dimethyl N-aryldithiocarbonimidates and 2-arylamino-2-imidazolines.

Authors:  Süleyman Servi; Murat Genc; Seher Gür; Murat Koca
Journal:  Eur J Med Chem       Date:  2005-04-01       Impact factor: 6.514

3.  New bis-aminomercaptotriazoles and bis-triazolothiadiazoles as possible anticancer agents.

Authors:  B Shivarama Holla; K Narayana Poojary; B Sooryanarayana Rao; M K Shivananda
Journal:  Eur J Med Chem       Date:  2002-06       Impact factor: 6.514

4.  Synthesis and in vitro antibacterial evaluation of N-[5-(5-nitro-2-thienyl)-1,3,4-thiadiazole-2-yl] piperazinyl quinolones.

Authors:  Alireza Foroumadi; Shahla Mansouri; Zahra Kiani; Afsaneh Rahmani
Journal:  Eur J Med Chem       Date:  2003-09       Impact factor: 6.514

5.  Synthesis and in vitro antibacterial activity of some N-(5-aryl-1,3,4-thiadiazole-2-yl)piperazinyl quinolone derivatives.

Authors:  Alireza Foroumadi; Fatemeh Soltani; Mohammad Hasan Moshafi; Rogheeyeh Ashraf-Askari
Journal:  Farmaco       Date:  2003-10

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  6 in total

1.  (E)-N-(1-Benzothio-phen-3-yl-methyl-idene)-2,6-dimethyl-aniline.

Authors:  Nermin Kahveci Yağcı; Necmi Dege; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

2.  (E)-3-[(2-Methyl-4-nitro-phen-yl)imino-meth-yl]-1-benzothio-phene.

Authors:  Hasan Inaç; Necmi Dege; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  2-Ethyl-N-[(5-nitro-thio-phen-2-yl)methyl-idene]aniline.

Authors:  Umit Ceylan; Hasan Tanak; Sümeyye Gümüş; Erbil Ağar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

4.  (Z)-2-[(E)-2-(1-Benzothio-phen-3-yl-methyl-idene)hydrazin-1-yl-idene]-1,2-diphenyl-ethanone.

Authors:  Merve Pekdemir; Samil Işık; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28

5.  2-{(E)-[(3-Iodo-4-methyl-phen-yl)imino]-meth-yl}-4-(trifluoro-meth-oxy)phenol.

Authors:  Merve Pekdemir; Samil Işık; Ayşen Alaman Ağar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

6.  (E)-4-Methyl-N-[(5-nitro-thio-phen-2-yl)methyl-idene]aniline.

Authors:  Umit Ceylan; Sümeyye Gümüş; Erbil Ağar; Mustafa Serkan Soylu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.