Literature DB >> 22220070

3-[(Z)-Benzyl-idene]-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

V Sabari, G Jagadeesan, Raman Selvakumar, Mannickam Bakthadoss, S Aravindhan.   

Abstract

In the title compound, C(16)H(13)NOS, the seven-membered ring adopts a distorted half-chair conformation. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains running along the b axis. The crystal packing is further stabilized by C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 22220070      PMCID: PMC3247452          DOI: 10.1107/S1600536811042991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of thia­zepin derivatives, see: Tomascovic et al. (2000 ▶); Rajsner et al. (1971 ▶); Metys et al. (1965 ▶). For the conformation of thia­zepin derivatives, see: Sridevi et al. (2011 ▶).

Experimental

Crystal data

C16H13NOS M = 267.33 Orthorhombic, a = 10.7711 (9) Å b = 7.8736 (7) Å c = 31.610 (3) Å V = 2680.7 (4) Å3 Z = 8 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.2 × 0.2 × 0.2 mm

Data collection

Bruker KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.980, T max = 0.990 13085 measured reflections 3306 independent reflections 2643 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.112 S = 1.04 3306 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042991/bt5678sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042991/bt5678Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042991/bt5678Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NOSF(000) = 1120
Mr = 267.33Dx = 1.325 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 8725 reflections
a = 10.7711 (9) Åθ = 2.8–29.1°
b = 7.8736 (7) ŵ = 0.23 mm1
c = 31.610 (3) ÅT = 293 K
V = 2680.7 (4) Å3Orthorhombic, colourless
Z = 80.2 × 0.2 × 0.2 mm
Bruker KappaCCD APEXII diffractometer3306 independent reflections
Radiation source: fine-focus sealed tube2643 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 15.9948 pixels mm-1θmax = 28.3°, θmin = 1.3°
ω scansh = −14→7
Absorption correction: multi-scan (APEX2; Bruker, 2004)k = −5→10
Tmin = 0.980, Tmax = 0.990l = −23→42
13085 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0544P)2 + 0.6524P] where P = (Fo2 + 2Fc2)/3
3306 reflections(Δ/σ)max = 0.002
180 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H101.0606 (16)−0.099 (2)0.6162 (5)0.048 (5)*
H0.8379 (16)0.440 (2)0.6294 (5)0.042 (4)*
S0.90221 (4)0.20135 (6)0.529568 (12)0.04764 (14)
O0.73812 (10)0.16660 (13)0.64118 (3)0.0435 (3)
N0.88207 (11)0.35628 (15)0.61960 (4)0.0351 (3)
C80.90106 (16)0.01129 (19)0.56317 (5)0.0461 (4)
H8A0.8216−0.04580.56050.055*
H8B0.9653−0.06650.55380.055*
C70.92280 (14)0.05759 (17)0.60855 (4)0.0359 (3)
C60.83940 (13)0.19642 (17)0.62461 (4)0.0333 (3)
C11.11685 (15)0.3856 (2)0.53349 (5)0.0445 (4)
H11.13310.34040.50690.053*
C50.98953 (13)0.39991 (16)0.59611 (4)0.0332 (3)
C21.19757 (16)0.5031 (2)0.55064 (6)0.0494 (4)
H21.26690.53810.53540.059*
C41.07215 (15)0.51731 (19)0.61325 (5)0.0432 (4)
H41.05800.56140.64010.052*
C91.01129 (14)0.33387 (17)0.55554 (4)0.0359 (3)
C160.98687 (17)0.1038 (2)0.70536 (5)0.0515 (4)
H160.91230.15530.69800.062*
C111.05193 (15)0.01041 (19)0.67530 (5)0.0412 (3)
C31.17543 (16)0.5686 (2)0.59035 (6)0.0494 (4)
H31.23000.64760.60190.059*
C131.2089 (2)−0.0450 (3)0.72861 (7)0.0690 (6)
H131.2840−0.09470.73620.083*
C141.1430 (2)0.0472 (3)0.75774 (7)0.0667 (6)
H141.17300.05990.78510.080*
C101.01213 (15)−0.01630 (18)0.63123 (5)0.0400 (3)
C121.16375 (17)−0.0644 (2)0.68770 (6)0.0555 (4)
H121.2087−0.12830.66830.067*
C151.0318 (2)0.1210 (3)0.74614 (6)0.0626 (5)
H150.98670.18300.76590.075*
U11U22U33U12U13U23
S0.0540 (3)0.0560 (3)0.0329 (2)−0.00587 (19)−0.00722 (17)−0.00413 (17)
O0.0376 (6)0.0446 (6)0.0483 (6)−0.0052 (5)0.0072 (5)−0.0052 (5)
N0.0361 (7)0.0308 (6)0.0385 (6)0.0026 (5)0.0060 (5)−0.0043 (5)
C80.0582 (10)0.0399 (8)0.0403 (8)−0.0077 (7)0.0035 (7)−0.0108 (6)
C70.0417 (8)0.0298 (6)0.0361 (7)−0.0036 (6)0.0064 (6)−0.0030 (5)
C60.0345 (7)0.0355 (7)0.0299 (6)−0.0014 (6)−0.0017 (5)−0.0031 (5)
C10.0500 (9)0.0433 (8)0.0401 (8)0.0036 (7)0.0095 (7)0.0038 (7)
C50.0341 (7)0.0283 (6)0.0372 (7)0.0031 (5)0.0010 (6)0.0020 (5)
C20.0441 (9)0.0434 (8)0.0607 (10)−0.0010 (7)0.0135 (8)0.0078 (7)
C40.0464 (9)0.0358 (7)0.0472 (9)−0.0032 (7)0.0022 (7)−0.0056 (6)
C90.0388 (8)0.0343 (7)0.0345 (7)0.0022 (6)−0.0006 (6)0.0018 (5)
C160.0490 (10)0.0629 (10)0.0425 (9)0.0091 (8)−0.0011 (7)−0.0004 (8)
C110.0413 (8)0.0367 (7)0.0457 (8)0.0010 (6)0.0020 (7)0.0063 (6)
C30.0447 (9)0.0383 (8)0.0652 (11)−0.0079 (7)0.0023 (8)−0.0021 (7)
C130.0549 (11)0.0700 (13)0.0821 (14)0.0031 (10)−0.0195 (10)0.0156 (11)
C140.0707 (13)0.0733 (13)0.0561 (11)−0.0123 (11)−0.0206 (10)0.0097 (10)
C100.0448 (9)0.0311 (7)0.0442 (8)0.0034 (6)0.0101 (7)−0.0017 (6)
C120.0491 (10)0.0524 (10)0.0649 (11)0.0090 (8)0.0010 (8)0.0075 (8)
C150.0678 (13)0.0746 (12)0.0454 (9)0.0002 (10)−0.0033 (9)−0.0049 (9)
S—C91.7728 (15)C2—H20.9300
S—C81.8352 (17)C4—C31.387 (2)
O—C61.2326 (17)C4—H40.9300
N—C61.3493 (18)C16—C151.384 (2)
N—C51.4174 (18)C16—C111.391 (2)
N—H0.872 (18)C16—H160.9300
C8—C71.498 (2)C11—C121.397 (2)
C8—H8A0.9700C11—C101.473 (2)
C8—H8B0.9700C3—H30.9300
C7—C101.334 (2)C13—C141.371 (3)
C7—C61.503 (2)C13—C121.390 (3)
C6—O1.2326 (17)C13—H130.9300
C1—C21.381 (2)C14—C151.381 (3)
C1—C91.394 (2)C14—H140.9300
C1—H10.9300C10—H100.962 (18)
C5—C41.393 (2)C12—H120.9300
C5—C91.4037 (19)C15—H150.9300
C2—C31.378 (2)
C9—S—C8102.50 (7)C5—C4—H4119.9
C6—N—C5124.46 (12)C1—C9—C5118.98 (14)
C6—N—H118.7 (11)C1—C9—S118.75 (12)
C5—N—H116.6 (11)C5—C9—S122.04 (11)
C7—C8—S110.78 (10)C15—C16—C11120.80 (17)
C7—C8—H8A109.5C15—C16—H16119.6
S—C8—H8A109.5C11—C16—H16119.6
C7—C8—H8B109.5C16—C11—C12117.75 (16)
S—C8—H8B109.5C16—C11—C10125.11 (15)
H8A—C8—H8B108.1C12—C11—C10117.14 (15)
C10—C7—C8121.42 (14)C2—C3—C4120.34 (16)
C10—C7—C6124.53 (13)C2—C3—H3119.8
C8—C7—C6114.01 (13)C4—C3—H3119.8
O—C6—N121.94 (13)C14—C13—C12120.12 (19)
O—C6—N121.94 (13)C14—C13—H13119.9
O—C6—C7122.26 (13)C12—C13—H13119.9
O—C6—C7122.26 (13)C13—C14—C15119.60 (19)
N—C6—C7115.79 (12)C13—C14—H14120.2
C2—C1—C9120.89 (15)C15—C14—H14120.2
C2—C1—H1119.6C7—C10—C11131.02 (14)
C9—C1—H1119.6C7—C10—H10115.1 (11)
C4—C5—C9119.65 (13)C11—C10—H10113.9 (11)
C4—C5—N118.61 (13)C13—C12—C11121.10 (18)
C9—C5—N121.68 (13)C13—C12—H12119.5
C3—C2—C1119.96 (15)C11—C12—H12119.5
C3—C2—H2120.0C14—C15—C16120.63 (19)
C1—C2—H2120.0C14—C15—H15119.7
C3—C4—C5120.17 (15)C16—C15—H15119.7
C3—C4—H4119.9
C9—S—C8—C732.87 (13)C4—C5—C9—C11.0 (2)
S—C8—C7—C10−126.73 (14)N—C5—C9—C1178.07 (13)
S—C8—C7—C650.98 (16)C4—C5—C9—S−173.34 (11)
O—O—C6—N0.0 (4)N—C5—C9—S3.70 (19)
O—O—C6—C70.0 (3)C8—S—C9—C1120.08 (13)
C5—N—C6—O−171.54 (13)C8—S—C9—C5−65.54 (13)
C5—N—C6—O−171.54 (13)C15—C16—C11—C12−0.2 (3)
C5—N—C6—C78.2 (2)C15—C16—C11—C10179.74 (17)
C10—C7—C6—O−92.01 (19)C1—C2—C3—C4−0.1 (3)
C8—C7—C6—O90.37 (16)C5—C4—C3—C2−0.4 (3)
C10—C7—C6—O−92.01 (19)C12—C13—C14—C15−0.2 (3)
C8—C7—C6—O90.37 (16)C8—C7—C10—C11178.60 (15)
C10—C7—C6—N88.27 (18)C6—C7—C10—C111.1 (3)
C8—C7—C6—N−89.35 (16)C16—C11—C10—C711.7 (3)
C6—N—C5—C4−135.93 (15)C12—C11—C10—C7−168.36 (17)
C6—N—C5—C947.0 (2)C14—C13—C12—C110.7 (3)
C9—C1—C2—C31.1 (2)C16—C11—C12—C13−0.5 (3)
C9—C5—C4—C30.0 (2)C10—C11—C12—C13179.57 (17)
N—C5—C4—C3−177.16 (14)C13—C14—C15—C16−0.4 (3)
C2—C1—C9—C5−1.6 (2)C11—C16—C15—C140.6 (3)
C2—C1—C9—S172.96 (12)
D—H···AD—HH···AD···AD—H···A
N—H···Oi0.872 (18)1.996 (18)2.8480 (16)165.4 (16)
C14—H14···Oii0.932.573.485 (2)167.
C16—H16···O0.932.603.397 (2)144.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H⋯Oi0.872 (18)1.996 (18)2.8480 (16)165.4 (16)
C14—H14⋯Oii0.932.573.485 (2)167
C16—H16⋯O0.932.603.397 (2)144

Symmetry codes: (i) ; (ii) .

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Authors:  J Metys; J Metysová
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3.  3-(2-Methyl-benzyl-idene)-2,3-dihydro-1,5-benzothia-zepin-4(5H)-one.

Authors:  D Sridevi; Sundari Bhaskaran; G Usha; G Murugan; M Bakthadoss
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1.  (Z)-3-(2-Meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

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2.  (Z)-3-(4-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

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