Literature DB >> 25705485

Crystal structure of (Z)-3-(4-meth-oxy-benzyl-idene)-2,3-di-hydro-benzo[b][1,4]thia-zepin-4(5H)-one.

V Vinayagam1, J Mohan Raj2, S Murugavel3, R Selvakumar1, M Bakthadoss4.   

Abstract

In the title compound, C17H15NO2S, the two C atoms linking the S and carbonyl C atoms of the seven-membered thia-zepine ring are disordered over two sites, with occupancies of 0.511 (4) and 0.489 (4); both disorder components adopt distorted twist-boat conformations. In the crystal, N-H⋯O and C-H⋯O hydrogen bonds link inverted-related mol-ecules into dimers, incorporating R 1 (2)(6) and R 2 (2)(8) ring motifs; the acceptor carbonyl O atom is bifurcated. These dimers are further linked by C-H⋯O hydrogen bonds, forming supra-molecular tapes running along the a axis.

Entities:  

Keywords:  benzo[b][1,4]thia­zepin-4(5H)-one; crystal structure; hydrogen bonding; pharmaceutical properties; thia­zepin derivatives

Year:  2015        PMID: 25705485      PMCID: PMC4331881          DOI: 10.1107/S2056989014026267

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the pharmaceutical properties of thia­zepin derivatives, see: Lončar-Tomascovic et al. (2000 ▸); Rajsner et al. (1971 ▸); Metys & Metysová (1965 ▸). For related structures, see: Lakshmanan et al. (2012 ▸); Selvakumar et al. (2012 ▸).

Experimental

Crystal data

C17H15NO2S M = 297.36 Monoclinic, a = 21.434 (5) Å b = 5.715 (4) Å c = 23.870 (5) Å β = 101.091 (4)° V = 2869 (2) Å3 Z = 8 Mo Kα radiation μ = 0.23 mm−1 T = 293 K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.934, T max = 0.944 17286 measured reflections 4099 independent reflections 2744 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.139 S = 1.03 4099 reflections 210 parameters 4 restraints H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.34 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989014026267/tk5350sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026267/tk5350Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989014026267/tk5350Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989014026267/tk5350fig1.tif Mol­ecular structure of the title compound showing displacement ellipsoids at the 30% probability level. H atoms are presented as a small spheres of arbitrary radii. Click here for additional data file. via a -x, −y, −z x, 1+y, z . DOI: 10.1107/S2056989014026267/tk5350fig2.tif Supra­molecular tape formation in the crystal packing of the title compound whereby bifurcated hydrogen bonds link inverted mol­ecules into dimers sustained by N—H⋯O and C—H⋯O (red dashed lines) contacts are linked via C—H⋯O contacts (blue dashed lines) along a axis. [Symmetry code: (i) -x, −y, −z; (ii) x, 1+y, z]. CCDC reference: 1036763 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H15NO2SF(000) = 1248
Mr = 297.36Dx = 1.377 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4132 reflections
a = 21.434 (5) Åθ = 1.7–29.9°
b = 5.715 (4) ŵ = 0.23 mm1
c = 23.870 (5) ÅT = 293 K
β = 101.091 (4)°Block, colourless
V = 2869 (2) Å30.30 × 0.30 × 0.25 mm
Z = 8
Bruker APEXII CCD diffractometer4099 independent reflections
Radiation source: fine-focus sealed tube2744 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 29.9°, θmin = 1.7°
ω scansh = −30→24
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −7→8
Tmin = 0.934, Tmax = 0.944l = −33→32
17286 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0647P)2 + 1.1615P] where P = (Fo2 + 2Fc2)/3
4099 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.25 e Å3
4 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C2−0.05513 (8)0.5769 (3)0.10567 (7)0.0516 (4)
C3−0.09963 (11)0.7568 (3)0.10107 (9)0.0689 (5)
H3−0.10010.85120.13270.083*
C4−0.14266 (12)0.8004 (4)0.05193 (10)0.0790 (6)
H4−0.17180.92190.05030.095*
C5−0.14211 (10)0.6629 (4)0.00527 (10)0.0722 (5)
H5−0.17080.6906−0.02860.087*
C6−0.09941 (10)0.4851 (4)0.00854 (9)0.0691 (5)
H6−0.09960.3927−0.02360.083*
C7−0.05515 (8)0.4357 (3)0.05837 (8)0.0525 (4)
C80.03347 (9)0.1194 (3)0.08459 (7)0.0549 (4)
C100.10676 (9)0.0681 (3)0.17287 (7)0.0528 (4)
H10A0.1284−0.01300.14870.063*0.489 (4)
H10B0.1093−0.07850.15660.063*0.511 (4)
C110.14272 (8)0.0921 (3)0.23129 (7)0.0474 (4)
C120.13743 (8)0.2801 (3)0.26731 (7)0.0534 (4)
H120.10740.39570.25490.064*
C130.17552 (8)0.2999 (3)0.32082 (7)0.0525 (4)
H130.17100.42760.34390.063*
C140.22010 (8)0.1302 (3)0.33987 (7)0.0492 (4)
C150.22513 (8)−0.0627 (3)0.30585 (8)0.0551 (4)
H150.2542−0.18060.31900.066*
C160.18736 (8)−0.0793 (3)0.25292 (8)0.0533 (4)
H160.1915−0.20930.23050.064*
C170.26254 (13)0.3437 (5)0.42387 (10)0.0895 (7)
H17A0.27160.47520.40170.134*
H17B0.29500.33050.45760.134*
H17C0.22200.36560.43460.134*
N1−0.01563 (7)0.2418 (3)0.05307 (6)0.0610 (4)
H1−0.02580.18260.01940.073*
O10.05465 (6)−0.0461 (2)0.06174 (5)0.0605 (3)
O20.26115 (6)0.1372 (2)0.39107 (6)0.0691 (4)
S1−0.00374 (3)0.55138 (8)0.17212 (2)0.06381 (18)
C1A0.00694 (16)0.2393 (5)0.18212 (13)0.0438 (8)0.489 (4)
H1A0.02220.20800.22240.053*0.489 (4)
H1B−0.03400.16290.17100.053*0.489 (4)
C9A0.05207 (17)0.1363 (7)0.14902 (14)0.0425 (8)0.489 (4)
C1B0.06528 (16)0.4832 (6)0.14859 (14)0.0529 (9)0.511 (4)
H1C0.06610.56690.11340.063*0.511 (4)
H1D0.10160.53380.17680.063*0.511 (4)
C9B0.07040 (18)0.2265 (6)0.13852 (15)0.0467 (8)0.511 (4)
U11U22U33U12U13U23
C20.0612 (10)0.0418 (8)0.0559 (9)−0.0078 (7)0.0218 (8)−0.0015 (7)
C30.0945 (15)0.0501 (10)0.0679 (12)0.0085 (10)0.0301 (11)0.0005 (9)
C40.0937 (16)0.0612 (12)0.0861 (15)0.0218 (11)0.0275 (13)0.0105 (11)
C50.0695 (12)0.0685 (13)0.0761 (13)0.0072 (10)0.0079 (10)0.0050 (11)
C60.0674 (12)0.0676 (12)0.0677 (12)0.0064 (10)0.0018 (9)−0.0141 (10)
C70.0505 (9)0.0505 (9)0.0570 (9)−0.0039 (7)0.0117 (7)−0.0085 (7)
C80.0606 (10)0.0570 (10)0.0470 (9)0.0012 (8)0.0105 (8)−0.0085 (7)
C100.0680 (11)0.0419 (8)0.0494 (9)−0.0073 (8)0.0134 (8)−0.0044 (7)
C110.0530 (9)0.0431 (8)0.0481 (8)−0.0056 (7)0.0147 (7)−0.0008 (6)
C120.0564 (10)0.0456 (9)0.0562 (9)0.0089 (7)0.0060 (8)−0.0005 (7)
C130.0556 (10)0.0487 (9)0.0530 (9)0.0055 (7)0.0097 (7)−0.0071 (7)
C140.0464 (8)0.0509 (9)0.0514 (9)0.0014 (7)0.0122 (7)0.0047 (7)
C150.0538 (10)0.0464 (9)0.0658 (11)0.0106 (7)0.0135 (8)0.0047 (8)
C160.0601 (10)0.0418 (8)0.0614 (10)0.0026 (7)0.0200 (8)−0.0054 (7)
C170.1079 (18)0.0866 (16)0.0624 (12)0.0135 (14)−0.0125 (12)−0.0123 (12)
N10.0660 (9)0.0634 (9)0.0499 (8)0.0091 (7)0.0020 (7)−0.0183 (7)
O10.0781 (8)0.0546 (7)0.0481 (7)0.0079 (6)0.0104 (6)−0.0085 (5)
O20.0680 (8)0.0720 (9)0.0597 (8)0.0116 (7)−0.0064 (6)0.0002 (7)
S10.0906 (4)0.0514 (3)0.0512 (3)−0.0002 (2)0.0179 (2)−0.00693 (19)
C1A0.0543 (18)0.0415 (16)0.0383 (15)−0.0025 (13)0.0156 (13)−0.0022 (12)
C9A0.048 (2)0.0385 (18)0.0434 (17)−0.0072 (15)0.0143 (15)−0.0046 (14)
C1B0.063 (2)0.0443 (17)0.0482 (17)−0.0116 (14)0.0023 (15)0.0032 (13)
C9B0.0474 (19)0.0451 (19)0.0477 (18)−0.0094 (15)0.0093 (15)−0.0068 (15)
C2—C71.388 (2)C12—C131.382 (2)
C2—C31.392 (3)C12—H120.9300
C2—S11.7545 (19)C13—C141.376 (2)
C3—C41.368 (3)C13—H130.9300
C3—H30.9300C14—O21.362 (2)
C4—C51.365 (3)C14—C151.386 (2)
C4—H40.9300C15—C161.367 (2)
C5—C61.360 (3)C15—H150.9300
C5—H50.9300C16—H160.9300
C6—C71.400 (3)C17—O21.413 (3)
C6—H60.9300C17—H17A0.9600
C7—N11.415 (2)C17—H17B0.9600
C8—O11.222 (2)C17—H17C0.9600
C8—N11.363 (2)N1—H10.8600
C8—C9B1.505 (4)S1—C1B1.725 (3)
C8—C9A1.516 (4)S1—C1A1.808 (3)
C10—C9A1.262 (4)C1A—C9A1.484 (4)
C10—C9B1.361 (4)C1A—H1A0.9700
C10—C111.464 (2)C1A—H1B0.9700
C10—H10A0.9300C1B—C9B1.494 (4)
C10—H10B0.9300C1B—H1C0.9700
C11—C121.395 (2)C1B—H1D0.9700
C11—C161.397 (2)
C7—C2—C3118.18 (18)C12—C13—H13120.1
C7—C2—S1126.08 (14)O2—C14—C13124.28 (16)
C3—C2—S1115.74 (14)O2—C14—C15116.08 (15)
C4—C3—C2122.73 (19)C13—C14—C15119.64 (16)
C4—C3—H3118.6C16—C15—C14119.87 (15)
C2—C3—H3118.6C16—C15—H15120.1
C5—C4—C3119.0 (2)C14—C15—H15120.1
C5—C4—H4120.5C15—C16—C11122.34 (16)
C3—C4—H4120.5C15—C16—H16118.8
C6—C5—C4119.7 (2)C11—C16—H16118.8
C6—C5—H5120.2O2—C17—H17A109.5
C4—C5—H5120.2O2—C17—H17B109.5
C5—C6—C7122.6 (2)H17A—C17—H17B109.5
C5—C6—H6118.7O2—C17—H17C109.5
C7—C6—H6118.7H17A—C17—H17C109.5
C2—C7—C6117.89 (17)H17B—C17—H17C109.5
C2—C7—N1128.43 (17)C8—N1—C7139.85 (15)
C6—C7—N1113.67 (16)C8—N1—H1110.1
O1—C8—N1117.68 (15)C7—N1—H1110.1
O1—C8—C9B121.1 (2)C14—O2—C17117.57 (15)
N1—C8—C9B119.10 (19)C1B—S1—C298.80 (12)
O1—C8—C9A117.03 (19)C1B—S1—C1A74.06 (15)
N1—C8—C9A123.48 (18)C2—S1—C1A104.06 (12)
C9B—C8—C9A27.63 (14)C9A—C1A—S1113.6 (2)
C9A—C10—C9B31.63 (17)C9A—C1A—H1A108.8
C9A—C10—C11132.4 (2)S1—C1A—H1A108.8
C9B—C10—C11130.31 (19)C9A—C1A—H1B108.8
C9A—C10—H10A113.8S1—C1A—H1B108.8
C9B—C10—H10A104.7H1A—C1A—H1B107.7
C11—C10—H10A113.8C10—C9A—C1A121.8 (3)
C9A—C10—H10B102.4C10—C9A—C8118.6 (2)
C9B—C10—H10B114.8C1A—C9A—C8119.6 (3)
C11—C10—H10B114.9C9B—C1B—S1111.6 (2)
H10A—C10—H10B38.2C9B—C1B—H1C109.3
C12—C11—C16116.35 (16)S1—C1B—H1C109.3
C12—C11—C10124.67 (15)C9B—C1B—H1D109.3
C16—C11—C10118.94 (15)S1—C1B—H1D109.3
C13—C12—C11121.95 (16)H1C—C1B—H1D108.0
C13—C12—H12119.0C10—C9B—C1B127.4 (3)
C11—C12—H12119.0C10—C9B—C8113.0 (2)
C14—C13—C12119.80 (16)C1B—C9B—C8119.6 (3)
C14—C13—H13120.1
C7—C2—C3—C4−0.6 (3)C7—C2—S1—C1B39.04 (18)
S1—C2—C3—C4179.50 (17)C3—C2—S1—C1B−141.03 (17)
C2—C3—C4—C5−0.1 (3)C7—C2—S1—C1A−36.62 (18)
C3—C4—C5—C60.5 (3)C3—C2—S1—C1A143.31 (16)
C4—C5—C6—C7−0.1 (4)C1B—S1—C1A—C9A−17.3 (2)
C3—C2—C7—C60.9 (3)C2—S1—C1A—C9A78.0 (2)
S1—C2—C7—C6−179.14 (14)C9B—C10—C9A—C1A−109.5 (6)
C3—C2—C7—N1−178.87 (18)C11—C10—C9A—C1A−8.6 (6)
S1—C2—C7—N11.1 (3)C9B—C10—C9A—C868.3 (4)
C5—C6—C7—C2−0.6 (3)C11—C10—C9A—C8169.3 (2)
C5—C6—C7—N1179.2 (2)S1—C1A—C9A—C10107.7 (4)
C9A—C10—C11—C12−30.8 (4)S1—C1A—C9A—C8−70.1 (4)
C9B—C10—C11—C1211.7 (4)O1—C8—C9A—C1034.1 (4)
C9A—C10—C11—C16151.4 (3)N1—C8—C9A—C10−161.6 (3)
C9B—C10—C11—C16−166.1 (3)C9B—C8—C9A—C10−71.9 (4)
C16—C11—C12—C131.9 (2)O1—C8—C9A—C1A−148.0 (3)
C10—C11—C12—C13−175.93 (16)N1—C8—C9A—C1A16.3 (4)
C11—C12—C13—C14−0.2 (3)C9B—C8—C9A—C1A105.9 (6)
C12—C13—C14—O2177.88 (16)C2—S1—C1B—C9B−85.8 (2)
C12—C13—C14—C15−1.9 (3)C1A—S1—C1B—C9B16.4 (2)
O2—C14—C15—C16−177.57 (15)C9A—C10—C9B—C1B118.0 (6)
C13—C14—C15—C162.2 (3)C11—C10—C9B—C1B10.1 (6)
C14—C15—C16—C11−0.4 (3)C9A—C10—C9B—C8−63.2 (4)
C12—C11—C16—C15−1.6 (2)C11—C10—C9B—C8−171.13 (19)
C10—C11—C16—C15176.40 (16)S1—C1B—C9B—C10−102.3 (4)
O1—C8—N1—C7−179.9 (2)S1—C1B—C9B—C879.0 (4)
C9B—C8—N1—C7−16.1 (4)O1—C8—C9B—C10−32.2 (4)
C9A—C8—N1—C715.9 (4)N1—C8—C9B—C10164.6 (2)
C2—C7—N1—C8−1.1 (4)C9A—C8—C9B—C1057.2 (4)
C6—C7—N1—C8179.1 (2)O1—C8—C9B—C1B146.6 (3)
C13—C14—O2—C17−7.0 (3)N1—C8—C9B—C1B−16.6 (4)
C15—C14—O2—C17172.7 (2)C9A—C8—C9B—C1B−123.9 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.072.9291 (18)177
C6—H6···O1i0.932.453.263 (3)146
C1B—H1C···O1ii0.972.523.377 (4)147
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1O1i 0.862.072.9291(18)177
C6H6O1i 0.932.453.263(3)146
C1BH1CO1ii 0.972.523.377(4)147

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Derivative of 4,9-dihydrothieno(2,3-b)benzo(e)thiepine--a new type of effective antihistaminic].

Authors:  J Metys; J Metysová
Journal:  Acta Biol Med Ger       Date:  1965

3.  (Z)-3-(2-Meth-oxy-benz-yl)-1,5-benzo-thia-zepin-4(5H)-one.

Authors:  R Selvakumar; M Bakthadoss; D Lakshmanan; S Murugavel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

4.  (Z)-3-(4-Chloro-benz-yl)-1,5-benzothia-zepin-4(5H)-one.

Authors:  D Lakshmanan; S Murugavel; R Selvakumar; M Bakthadoss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-16

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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