Literature DB >> 22795220

Information theoretic approaches to understanding circuit function.

Adrienne Fairhall1, Eric Shea-Brown, Andrea Barreiro.   

Abstract

The analysis of stimulus/response patterns using information theoretic approaches requires the full probability distribution of stimuli and response. Recent progress in using information-based tools to understand circuit function has advanced understanding of neural coding at the single cell and population level. In advances over traditional reverse correlation approaches, the determination of receptive fields using information as a metric has allowed novel insights into stimulus representation and transformation. The application of maximum entropy methods to population codes has opened a rich exploration of the internal structure of these codes, revealing stimulus-driven functional connectivity. We speculate about the prospects and limitations of information as a general tool for dissecting neural circuits and relating their structure and function.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22795220      PMCID: PMC4043218          DOI: 10.1016/j.conb.2012.06.005

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  50 in total

1.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

2.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

3.  'Infotaxis' as a strategy for searching without gradients.

Authors:  Massimo Vergassola; Emmanuel Villermaux; Boris I Shraiman
Journal:  Nature       Date:  2007-01-25       Impact factor: 49.962

Review 4.  Sensory adaptation.

Authors:  Barry Wark; Brian Nils Lundstrom; Adrienne Fairhall
Journal:  Curr Opin Neurobiol       Date:  2007-08-21       Impact factor: 6.627

5.  Preserving information in neural transmission.

Authors:  Lawrence C Sincich; Jonathan C Horton; Tatyana O Sharpee
Journal:  J Neurosci       Date:  2009-05-13       Impact factor: 6.167

Review 6.  Extracting information from neuronal populations: information theory and decoding approaches.

Authors:  Rodrigo Quian Quiroga; Stefano Panzeri
Journal:  Nat Rev Neurosci       Date:  2009-03       Impact factor: 34.870

7.  Ising model for neural data: model quality and approximate methods for extracting functional connectivity.

Authors:  Yasser Roudi; Joanna Tyrcha; John Hertz
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-05-19

8.  The effect of correlated variability on the accuracy of a population code.

Authors:  L F Abbott; P Dayan
Journal:  Neural Comput       Date:  1999-01-01       Impact factor: 2.026

9.  Sparse low-order interaction network underlies a highly correlated and learnable neural population code.

Authors:  Elad Ganmor; Ronen Segev; Elad Schneidman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-20       Impact factor: 11.205

10.  Synergy, redundancy, and independence in population codes, revisited.

Authors:  Peter E Latham; Sheila Nirenberg
Journal:  J Neurosci       Date:  2005-05-25       Impact factor: 6.709

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  15 in total

Review 1.  Synergy, redundancy, and multivariate information measures: an experimentalist's perspective.

Authors:  Nicholas Timme; Wesley Alford; Benjamin Flecker; John M Beggs
Journal:  J Comput Neurosci       Date:  2013-07-03       Impact factor: 1.621

2.  Nonlinear convergence boosts information coding in circuits with parallel outputs.

Authors:  Gabrielle J Gutierrez; Fred Rieke; Eric T Shea-Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

3.  Motor control by precisely timed spike patterns.

Authors:  Kyle H Srivastava; Caroline M Holmes; Michiel Vellema; Andrea R Pack; Coen P H Elemans; Ilya Nemenman; Samuel J Sober
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-18       Impact factor: 11.205

4.  Near-optimal decoding of transient stimuli from coupled neuronal subpopulations.

Authors:  James Trousdale; Samuel R Carroll; Fabrizio Gabbiani; Krešimir Josić
Journal:  J Neurosci       Date:  2014-09-03       Impact factor: 6.167

Review 5.  Cellular noise and information transmission.

Authors:  Andre Levchenko; Ilya Nemenman
Journal:  Curr Opin Biotechnol       Date:  2014-06-09       Impact factor: 9.740

Review 6.  Analysis of Neuronal Spike Trains, Deconstructed.

Authors:  Johnatan Aljadeff; Benjamin J Lansdell; Adrienne L Fairhall; David Kleinfeld
Journal:  Neuron       Date:  2016-07-20       Impact factor: 17.173

7.  Unsupervised Bayesian Ising Approximation for decoding neural activity and other biological dictionaries.

Authors:  Damián G Hernández; Samuel J Sober; Ilya Nemenman
Journal:  Elife       Date:  2022-03-22       Impact factor: 8.713

8.  Efficient encoding of motion is mediated by gap junctions in the fly visual system.

Authors:  Siwei Wang; Alexander Borst; Noga Zaslavsky; Naftali Tishby; Idan Segev
Journal:  PLoS Comput Biol       Date:  2017-12-04       Impact factor: 4.475

9.  Dual dimensionality reduction reveals independent encoding of motor features in a muscle synergy for insect flight control.

Authors:  Simon Sponberg; Thomas L Daniel; Adrienne L Fairhall
Journal:  PLoS Comput Biol       Date:  2015-04-28       Impact factor: 4.475

10.  Millisecond-scale motor encoding in a cortical vocal area.

Authors:  Claire Tang; Diala Chehayeb; Kyle Srivastava; Ilya Nemenman; Samuel J Sober
Journal:  PLoS Biol       Date:  2014-12-09       Impact factor: 8.029

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