Literature DB >> 15917459

Synergy, redundancy, and independence in population codes, revisited.

Peter E Latham1, Sheila Nirenberg.   

Abstract

Decoding the activity of a population of neurons is a fundamental problem in neuroscience. A key aspect of this problem is determining whether correlations in the activity, i.e., noise correlations, are important. If they are important, then the decoding problem is high dimensional: decoding algorithms must take the correlational structure in the activity into account. If they are not important, or if they play a minor role, then the decoding problem can be reduced to lower dimension and thus made more tractable. The issue of whether correlations are important has been a subject of heated debate. The debate centers around the validity of the measures used to address it. Here, we evaluate three of the most commonly used ones: synergy, DeltaI(shuffled), and DeltaI. We show that synergy and DeltaI(shuffled) are confounded measures: they can be zero when correlations are clearly important for decoding and positive when they are not. In contrast, DeltaI is not confounded. It is zero only when correlations are not important for decoding and positive only when they are; that is, it is zero only when one can decode exactly as well using a decoder that ignores correlations as one can using a decoder that does not, and it is positive only when one cannot decode as well. Finally, we show that DeltaI has an information theoretic interpretation; it is an upper bound on the information lost when correlations are ignored.

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Year:  2005        PMID: 15917459      PMCID: PMC6724819          DOI: 10.1523/JNEUROSCI.5319-04.2005

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.709


  37 in total

1.  On decoding the responses of a population of neurons from short time windows.

Authors:  S Panzeri; A Treves; S Schultz; E T Rolls
Journal:  Neural Comput       Date:  1999-10-01       Impact factor: 2.026

2.  Attention modulates synchronized neuronal firing in primate somatosensory cortex.

Authors:  P N Steinmetz; A Roy; P J Fitzgerald; S S Hsiao; K O Johnson; E Niebur
Journal:  Nature       Date:  2000-03-09       Impact factor: 49.962

3.  Population coding and decoding in a neural field: a computational study.

Authors:  Si Wu; Shun-Ichi Amari; Hiroyuki Nakahara
Journal:  Neural Comput       Date:  2002-05       Impact factor: 2.026

Review 4.  Redundancy reduction revisited.

Authors:  H Barlow
Journal:  Network       Date:  2001-08       Impact factor: 1.273

5.  Neural activity in prefrontal cortex during copying geometrical shapes. II. Decoding shape segments from neural ensembles.

Authors:  Bruno B Averbeck; David A Crowe; Matthew V Chafee; Apostolos P Georgopoulos
Journal:  Exp Brain Res       Date:  2003-04-01       Impact factor: 1.972

6.  A critical assessment of different measures of the information carried by correlated neuronal firing.

Authors:  Stefano Panzeri; Gianni Pola; Filippo Petroni; Malcolm P Young; Rasmus S Petersen
Journal:  Biosystems       Date:  2002 Oct-Dec       Impact factor: 1.973

7.  Synergy, redundancy, and independence in population codes.

Authors:  Elad Schneidman; William Bialek; Michael J Berry
Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

8.  Some informational aspects of visual perception.

Authors:  F ATTNEAVE
Journal:  Psychol Rev       Date:  1954-05       Impact factor: 8.934

9.  Entropy and information in neural spike trains: progress on the sampling problem.

Authors:  Ilya Nemenman; William Bialek; Rob de Ruyter van Steveninck
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-05-24

10.  Oscillatory responses in cat visual cortex exhibit inter-columnar synchronization which reflects global stimulus properties.

Authors:  C M Gray; P König; A K Engel; W Singer
Journal:  Nature       Date:  1989-03-23       Impact factor: 49.962

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  68 in total

1.  Redundant information encoding in primary motor cortex during natural and prosthetic motor control.

Authors:  Kelvin So; Karunesh Ganguly; Jessica Jimenez; Michael C Gastpar; Jose M Carmena
Journal:  J Comput Neurosci       Date:  2011-11-01       Impact factor: 1.621

2.  Millisecond encoding precision of auditory cortex neurons.

Authors:  Christoph Kayser; Nikos K Logothetis; Stefano Panzeri
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

3.  Local non-linear interactions in the visual cortex may reflect global decorrelation.

Authors:  Simo Vanni; Tom Rosenström
Journal:  J Comput Neurosci       Date:  2010-04-27       Impact factor: 1.621

4.  Cortical inhibition reduces information redundancy at presentation of communication sounds in the primary auditory cortex.

Authors:  Quentin Gaucher; Chloé Huetz; Boris Gourévitch; Jean-Marc Edeline
Journal:  J Neurosci       Date:  2013-06-26       Impact factor: 6.167

5.  A Distributed Neural Code in the Dentate Gyrus and in CA1.

Authors:  Fabio Stefanini; Lyudmila Kushnir; Jessica C Jimenez; Joshua H Jennings; Nicholas I Woods; Garret D Stuber; Mazen A Kheirbek; René Hen; Stefano Fusi
Journal:  Neuron       Date:  2020-06-09       Impact factor: 17.173

6.  The Identity of Information: How Deterministic Dependencies Constrain Information Synergy and Redundancy.

Authors:  Daniel Chicharro; Giuseppe Pica; Stefano Panzeri
Journal:  Entropy (Basel)       Date:  2018-03-05       Impact factor: 2.524

7.  Joint decoding of visual stimuli by IT neurons' spike counts is not improved by simultaneous recording.

Authors:  Britt Anderson; Mark I Sanderson; David L Sheinberg
Journal:  Exp Brain Res       Date:  2006-07-28       Impact factor: 1.972

8.  Noise reduction of coincidence detector output by the inferior colliculus of the barn owl.

Authors:  G Björn Christianson; José Luis Peña
Journal:  J Neurosci       Date:  2006-05-31       Impact factor: 6.167

9.  Population coding by electrosensory neurons.

Authors:  Maurice J Chacron; Joseph Bastian
Journal:  J Neurophysiol       Date:  2008-02-06       Impact factor: 2.714

10.  Ideal observer analysis of signal quality in retinal circuits.

Authors:  Robert G Smith; Narender K Dhingra
Journal:  Prog Retin Eye Res       Date:  2009-05-13       Impact factor: 21.198

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