Literature DB >> 23820856

Synergy, redundancy, and multivariate information measures: an experimentalist's perspective.

Nicholas Timme1, Wesley Alford, Benjamin Flecker, John M Beggs.   

Abstract

Information theory has long been used to quantify interactions between two variables. With the rise of complex systems research, multivariate information measures have been increasingly used to investigate interactions between groups of three or more variables, often with an emphasis on so called synergistic and redundant interactions. While bivariate information measures are commonly agreed upon, the multivariate information measures in use today have been developed by many different groups, and differ in subtle, yet significant ways. Here, we will review these multivariate information measures with special emphasis paid to their relationship to synergy and redundancy, as well as examine the differences between these measures by applying them to several simple model systems. In addition to these systems, we will illustrate the usefulness of the information measures by analyzing neural spiking data from a dissociated culture through early stages of its development. Our aim is that this work will aid other researchers as they seek the best multivariate information measure for their specific research goals and system. Finally, we have made software available online which allows the user to calculate all of the information measures discussed within this paper.

Mesh:

Year:  2013        PMID: 23820856     DOI: 10.1007/s10827-013-0458-4

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  67 in total

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Journal:  Nat Neurosci       Date:  1999-11       Impact factor: 24.884

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Authors:  Benjamin Flecker; Wesley Alford; John M Beggs; Paul L Williams; Randall D Beer
Journal:  Chaos       Date:  2011-09       Impact factor: 3.642

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Authors:  Ryan G James; Christopher J Ellison; James P Crutchfield
Journal:  Chaos       Date:  2011-09       Impact factor: 3.642

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Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

5.  Computational inference of the molecular logic for synaptic connectivity in C. elegans.

Authors:  Vinay Varadan; David M Miller; Dimitris Anastassiou
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

6.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

7.  Precisely timed spatiotemporal patterns of neural activity in dissociated cortical cultures.

Authors:  J D Rolston; D A Wagenaar; S M Potter
Journal:  Neuroscience       Date:  2007-07-05       Impact factor: 3.590

8.  Rapid neural coding in the retina with relative spike latencies.

Authors:  Tim Gollisch; Markus Meister
Journal:  Science       Date:  2008-02-22       Impact factor: 47.728

9.  Spontaneous periodic synchronized bursting during formation of mature patterns of connections in cortical cultures.

Authors:  H Kamioka; E Maeda; Y Jimbo; H P Robinson; A Kawana
Journal:  Neurosci Lett       Date:  1996-03-15       Impact factor: 3.046

10.  Synergy, redundancy, and independence in population codes, revisited.

Authors:  Peter E Latham; Sheila Nirenberg
Journal:  J Neurosci       Date:  2005-05-25       Impact factor: 6.709

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  35 in total

1.  The Identity of Information: How Deterministic Dependencies Constrain Information Synergy and Redundancy.

Authors:  Daniel Chicharro; Giuseppe Pica; Stefano Panzeri
Journal:  Entropy (Basel)       Date:  2018-03-05       Impact factor: 2.524

Review 2.  A Tutorial for Information Theory in Neuroscience.

Authors:  Nicholas M Timme; Christopher Lapish
Journal:  eNeuro       Date:  2018-09-11

3.  Reconciling emergences: An information-theoretic approach to identify causal emergence in multivariate data.

Authors:  Fernando E Rosas; Pedro A M Mediano; Henrik J Jensen; Anil K Seth; Adam B Barrett; Robin L Carhart-Harris; Daniel Bor
Journal:  PLoS Comput Biol       Date:  2020-12-21       Impact factor: 4.475

4.  A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities.

Authors:  Satoshi Okawa; Antonio Del Sol
Journal:  Nucleic Acids Res       Date:  2019-04-23       Impact factor: 16.971

5.  A synergistic core for human brain evolution and cognition.

Authors:  Andrea I Luppi; Pedro A M Mediano; Fernando E Rosas; Negin Holland; Tim D Fryer; John T O'Brien; James B Rowe; David K Menon; Daniel Bor; Emmanuel A Stamatakis
Journal:  Nat Neurosci       Date:  2022-05-26       Impact factor: 28.771

6.  Groupwise image registration based on a total correlation dissimilarity measure for quantitative MRI and dynamic imaging data.

Authors:  Jean-Marie Guyader; Wyke Huizinga; Dirk H J Poot; Matthijs van Kranenburg; André Uitterdijk; Wiro J Niessen; Stefan Klein
Journal:  Sci Rep       Date:  2018-08-30       Impact factor: 4.379

7.  Rank Order Coding: a Retinal Information Decoding Strategy Revealed by Large-Scale Multielectrode Array Retinal Recordings.

Authors:  Geoffrey Portelli; John M Barrett; Gerrit Hilgen; Timothée Masquelier; Alessandro Maccione; Stefano Di Marco; Luca Berdondini; Pierre Kornprobst; Evelyne Sernagor
Journal:  eNeuro       Date:  2016-06-03

8.  Assessing the solar variability signature in climate variables by information theory and wavelet coherence.

Authors:  Ileana Mares; Venera Dobrica; Constantin Mares; Crisan Demetrescu
Journal:  Sci Rep       Date:  2021-05-31       Impact factor: 4.379

9.  High-Degree Neurons Feed Cortical Computations.

Authors:  Nicholas M Timme; Shinya Ito; Maxym Myroshnychenko; Sunny Nigam; Masanori Shimono; Fang-Chin Yeh; Pawel Hottowy; Alan M Litke; John M Beggs
Journal:  PLoS Comput Biol       Date:  2016-05-09       Impact factor: 4.475

10.  Analysis of Power Laws, Shape Collapses, and Neural Complexity: New Techniques and MATLAB Support via the NCC Toolbox.

Authors:  Najja Marshall; Nicholas M Timme; Nicholas Bennett; Monica Ripp; Edward Lautzenhiser; John M Beggs
Journal:  Front Physiol       Date:  2016-06-27       Impact factor: 4.566

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