Literature DB >> 22784977

Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival.

Wojciech Kuban1, Alexandra Vaisman, John P McDonald, Kiyonobu Karata, Wei Yang, Myron F Goodman, Roger Woodgate.   

Abstract

Escherichia coli polymerase V (pol V/UmuD(2)'C) is a low-fidelity DNA polymerase that has recently been shown to avidly incorporate ribonucleotides (rNTPs) into undamaged DNA. The fidelity and sugar selectivity of pol V can be modified by missense mutations around the "steric gate" of UmuC. Here, we analyze the ability of three steric gate mutants of UmuC to facilitate translesion DNA synthesis (TLS) of a cyclobutane pyrimidine dimer (CPD) in vitro, and to promote UV-induced mutagenesis and cell survival in vivo. The pol V (UmuC_F10L) mutant discriminates against rNTP and incorrect dNTP incorporation much better than wild-type pol V and although exhibiting a reduced ability to bypass a CPD in vitro, does so with high-fidelity and consequently produces minimal UV-induced mutagenesis in vivo. In contrast, pol V (UmuC_Y11A) readily misincorporates both rNTPs and dNTPs during efficient TLS of the CPD in vitro. However, cells expressing umuD'C(Y11A) were considerably more UV-sensitive and exhibited lower levels of UV-induced mutagenesis than cells expressing wild-type umuD'C or umuD'C(Y11F). We propose that the increased UV-sensitivity and reduced UV-mutability of umuD'C(Y11A) is due to excessive incorporation of rNTPs during TLS that are subsequently targeted for repair, rather than an inability to traverse UV-induced lesions. Published by Elsevier B.V.

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Year:  2012        PMID: 22784977      PMCID: PMC3419331          DOI: 10.1016/j.dnarep.2012.06.005

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  51 in total

1.  umuDC-mediated cold sensitivity is a manifestation of functions of the UmuD(2)C complex involved in a DNA damage checkpoint control.

Authors:  M D Sutton; G C Walker
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Sequence analysis and phenotypes of five temperature sensitive mutator alleles of dnaE, encoding modified alpha-catalytic subunits of Escherichia coli DNA polymerase III holoenzyme.

Authors:  Dominique Vandewiele; Antonio R Fernández de Henestrosa; Andrew R Timms; Bryn A Bridges; Roger Woodgate
Journal:  Mutat Res       Date:  2002-01-29       Impact factor: 2.433

3.  A role for the umuDC gene products of Escherichia coli in increasing resistance to DNA damage in stationary phase by inhibiting the transition to exponential growth.

Authors:  S Murli; T Opperman; B T Smith; G C Walker
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

4.  Subunit-specific degradation of the UmuD/D' heterodimer by the ClpXP protease: the role of trans recognition in UmuD' stability.

Authors:  M Gonzalez; F Rasulova; M R Maurizi; R Woodgate
Journal:  EMBO J       Date:  2000-10-02       Impact factor: 11.598

5.  Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli.

Authors:  J Courcelle; A Khodursky; B Peter; P O Brown; P C Hanawalt
Journal:  Genetics       Date:  2001-05       Impact factor: 4.562

6.  Identification of additional genes belonging to the LexA regulon in Escherichia coli.

Authors:  A R Fernández De Henestrosa; T Ogi; S Aoyagi; D Chafin; J J Hayes; H Ohmori; R Woodgate
Journal:  Mol Microbiol       Date:  2000-03       Impact factor: 3.501

7.  Specific amino acid changes enhance the anti-recombination activity of the UmuD'C complex.

Authors:  S Sommer; G Coste; A Bailone
Journal:  Mol Microbiol       Date:  2000-03       Impact factor: 3.501

8.  An error-prone family Y DNA polymerase (DinB homolog from Sulfolobus solfataricus) uses a 'steric gate' residue for discrimination against ribonucleotides.

Authors:  Angela M DeLucia; Nigel D F Grindley; Catherine M Joyce
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

9.  Altered translesion synthesis in E. coli Pol V mutants selected for increased recombination inhibition.

Authors:  Suzanne Sommer; Olivier J Becherel; Geneviève Coste; Adriana Bailone; Robert P P Fuchs
Journal:  DNA Repair (Amst)       Date:  2003-12-09

10.  Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity.

Authors:  Alexandra Vaisman; Wojciech Kuban; John P McDonald; Kiyonobu Karata; Wei Yang; Myron F Goodman; Roger Woodgate
Journal:  Nucleic Acids Res       Date:  2012-03-15       Impact factor: 16.971

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  15 in total

1.  Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli.

Authors:  Alexandra Vaisman; John P McDonald; Stephan Noll; Donald Huston; Gregory Loeb; Myron F Goodman; Roger Woodgate
Journal:  Mutat Res       Date:  2014-02-01       Impact factor: 2.433

Review 2.  Redundancy in ribonucleotide excision repair: Competition, compensation, and cooperation.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2015-02-16

3.  Variants of mouse DNA polymerase κ reveal a mechanism of efficient and accurate translesion synthesis past a benzo[a]pyrene dG adduct.

Authors:  Yang Liu; Yeran Yang; Tie-Shan Tang; Hui Zhang; Zhifeng Wang; Errol Friedberg; Wei Yang; Caixia Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

Review 4.  Ribonucleotides in bacterial DNA.

Authors:  Jeremy W Schroeder; Justin R Randall; Lindsay A Matthews; Lyle A Simmons
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-11-12       Impact factor: 8.250

Review 5.  Ribonucleotide discrimination by translesion synthesis DNA polymerases.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-07-04       Impact factor: 8.250

6.  Role of RNase H enzymes in maintaining genome stability in Escherichia coli expressing a steric-gate mutant of pol VICE391.

Authors:  Erin Walsh; Sarah S Henrikus; Alexandra Vaisman; Karolina Makiela-Dzbenska; Thomas J Armstrong; Krystian Łazowski; John P McDonald; Myron F Goodman; Antoine M van Oijen; Piotr Jonczyk; Iwona J Fijalkowska; Andrew Robinson; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2019-08-10

7.  Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria.

Authors:  Vittorio Boscaro; Michele Felletti; Claudia Vannini; Matthew S Ackerman; Patrick S G Chain; Stephanie Malfatti; Lisa M Vergez; Maria Shin; Thomas G Doak; Michael Lynch; Giulio Petroni
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

8.  Two distinct mechanisms of Topoisomerase 1-dependent mutagenesis in yeast.

Authors:  Jang-Eun Cho; Nayun Kim; Yue C Li; Sue Jinks-Robertson
Journal:  DNA Repair (Amst)       Date:  2013-01-08

9.  Unlocking the steric gate of DNA polymerase η leads to increased genomic instability in Saccharomyces cerevisiae.

Authors:  Katherine A Donigan; Susana M Cerritelli; John P McDonald; Alexandra Vaisman; Robert J Crouch; Roger Woodgate
Journal:  DNA Repair (Amst)       Date:  2015-08-07

10.  Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V.

Authors:  John P McDonald; Alexandra Vaisman; Wojciech Kuban; Myron F Goodman; Roger Woodgate
Journal:  PLoS Genet       Date:  2012-11-08       Impact factor: 5.917

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