Literature DB >> 22762024

Genomics and bioinformatics of Parkinson's disease.

Sonja W Scholz1, Tim Mhyre, Habtom Ressom, Salim Shah, Howard J Federoff.   

Abstract

Within the last two decades, genomics and bioinformatics have profoundly impacted our understanding of the molecular mechanisms of Parkinson's disease (PD). From the description of the first PD gene in 1997 until today, we have witnessed the emergence of new technologies that have revolutionized our concepts to identify genetic mechanisms implicated in human health and disease. Driven by the publication of the human genome sequence and followed by the description of detailed maps for common genetic variability, novel applications to rapidly scrutinize the entire genome in a systematic, cost-effective manner have become a reality. As a consequence, about 30 genetic loci have been unequivocally linked to the pathogenesis of PD highlighting essential molecular pathways underlying this common disorder. Herein we discuss how neurogenomics and bioinformatics are applied to dissect the nature of this complex disease with the overall aim of developing rational therapeutic interventions.

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Year:  2012        PMID: 22762024      PMCID: PMC3385936          DOI: 10.1101/cshperspect.a009449

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  66 in total

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Journal:  Nat Rev Genet       Date:  2010-10       Impact factor: 53.242

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7.  Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.

Authors:  Michael A Nalls; Vincent Plagnol; Dena G Hernandez; Manu Sharma; Una-Marie Sheerin; Mohamad Saad; J Simón-Sánchez; Claudia Schulte; Suzanne Lesage; Sigurlaug Sveinbjörnsdóttir; Kári Stefánsson; Maria Martinez; John Hardy; Peter Heutink; Alexis Brice; Thomas Gasser; Andrew B Singleton; Nicholas W Wood
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8.  Cytoscape 2.8: new features for data integration and network visualization.

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Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937

9.  Identifying consensus disease pathways in Parkinson's disease using an integrative systems biology approach.

Authors:  Yvonne J K Edwards; Gary W Beecham; William K Scott; Sawsan Khuri; Guney Bademci; Demet Tekin; Eden R Martin; Zhijie Jiang; Deborah C Mash; Jarlath ffrench-Mullen; Margaret A Pericak-Vance; Nicholas Tsinoremas; Jeffery M Vance
Journal:  PLoS One       Date:  2011-02-22       Impact factor: 3.240

10.  A two-stage meta-analysis identifies several new loci for Parkinson's disease.

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Journal:  PLoS Genet       Date:  2011-06-30       Impact factor: 5.917

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  8 in total

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Journal:  Expert Rev Proteomics       Date:  2013-12-18       Impact factor: 3.940

2.  Regional analysis and genetic association of nigrostriatal degeneration in Lewy body disease.

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Journal:  Mov Disord       Date:  2017-09-26       Impact factor: 10.338

Review 3.  Biomarkers of Parkinson's disease: present and future.

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Review 4.  Parkinson's disease.

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5.  PDON: Parkinson's disease ontology for representation and modeling of the Parkinson's disease knowledge domain.

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Journal:  Theor Biol Med Model       Date:  2015-09-22       Impact factor: 2.432

6.  Complex network-driven view of genomic mechanisms underlying Parkinson's disease: analyses in dorsal motor vagal nucleus, locus coeruleus, and substantia nigra.

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Review 7.  Compensatory mechanisms in genetic models of neurodegeneration: are the mice better than humans?

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  8 in total

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