Literature DB >> 24351021

Proteomics in immunity and herpes simplex encephalitis.

Rebeca Pérez de Diego1, Claire Mulvey, Jean-Laurent Casanova, Jasminka Godovac-Zimmermann.   

Abstract

The genetic theory of infectious diseases has proposed that susceptibility to life-threatening infectious diseases in childhood, occurring in the course of primary infection, results mostly from individually rare but collectively diverse single-gene variants. Recent evidence of an ever-expanding spectrum of genes involved in susceptibility to infectious disease indicates that the paradigm has important implications for diagnosis and treatment. One such pathology is childhood herpes simplex encephalitis, which shows a pattern of rare but diverse disease-disposing genetic variants. The present report shows how proteomics can help to understand susceptibility to childhood herpes simplex encephalitis and other viral infections, suggests that proteomics may have a particularly important role to play, emphasizes that variation over the population is a critical issue for proteomics and notes some new challenges for proteomics and related bioinformatics tools in the context of rare but diverse genetic defects.

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Year:  2013        PMID: 24351021      PMCID: PMC4070007          DOI: 10.1586/14789450.2014.864954

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  39 in total

1.  Hypoxia elicits broad and systematic changes in protein subcellular localization.

Authors:  Robert Michael Henke; Ranita Ghosh Dastidar; Ajit Shah; Daniela Cadinu; Xiao Yao; Jagmohan Hooda; Li Zhang
Journal:  Am J Physiol Cell Physiol       Date:  2011-07-13       Impact factor: 4.249

2.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

Authors:  Jürgen Cox; Matthias Mann
Journal:  Nat Biotechnol       Date:  2008-11-30       Impact factor: 54.908

3.  Herpes simplex encephalitis in children with autosomal recessive and dominant TRIF deficiency.

Authors:  Vanessa Sancho-Shimizu; Rebeca Pérez de Diego; Lazaro Lorenzo; Rabih Halwani; Abdullah Alangari; Elisabeth Israelsson; Sylvie Fabrega; Annabelle Cardon; Jerome Maluenda; Megumi Tatematsu; Farhad Mahvelati; Melina Herman; Michael Ciancanelli; Yiqi Guo; Zobaida AlSum; Nouf Alkhamis; Abdulkarim S Al-Makadma; Ata Ghadiri; Soraya Boucherit; Sabine Plancoulaine; Capucine Picard; Flore Rozenberg; Marc Tardieu; Pierre Lebon; Emmanuelle Jouanguy; Nima Rezaei; Tsukasa Seya; Misako Matsumoto; Damien Chaussabel; Anne Puel; Shen-Ying Zhang; Laurent Abel; Saleh Al-Muhsen; Jean-Laurent Casanova
Journal:  J Clin Invest       Date:  2011-11-21       Impact factor: 14.808

4.  Human TRAF3 adaptor molecule deficiency leads to impaired Toll-like receptor 3 response and susceptibility to herpes simplex encephalitis.

Authors:  Rebeca Pérez de Diego; Vanessa Sancho-Shimizu; Lazaro Lorenzo; Anne Puel; Sabine Plancoulaine; Capucine Picard; Melina Herman; Annabelle Cardon; Anne Durandy; Jacinta Bustamante; Sivakumar Vallabhapurapu; Jerónimo Bravo; Klaus Warnatz; Yves Chaix; Françoise Cascarrigny; Pierre Lebon; Flore Rozenberg; Michael Karin; Marc Tardieu; Saleh Al-Muhsen; Emmanuelle Jouanguy; Shen-Ying Zhang; Laurent Abel; Jean-Laurent Casanova
Journal:  Immunity       Date:  2010-09-09       Impact factor: 31.745

5.  Age-dependent Mendelian predisposition to herpes simplex virus type 1 encephalitis in childhood.

Authors:  Laurent Abel; Sabine Plancoulaine; Emmanuelle Jouanguy; Shen-Ying Zhang; Nora Mahfoufi; Nathalie Nicolas; Vanessa Sancho-Shimizu; Alexandre Alcaïs; Yiqi Guo; Annabelle Cardon; Soraya Boucherit; Dorothée Obach; Thomas Clozel; Lazaro Lorenzo; Daniel Amsallem; Patrick Berquin; Thierry Blanc; Cécile Bost-Bru; Stéphane Chabrier; Brigitte Chabrol; Emmanuel Cheuret; Olivier Dulac; Philippe Evrard; Bénédicte Héron; Leila Lazaro; Josette Mancini; Jean-Michel Pedespan; François Rivier; Louis Vallée; Pierre Lebon; Flore Rozenberg; Jean-Laurent Casanova; Marc Tardieu
Journal:  J Pediatr       Date:  2010-05-31       Impact factor: 4.406

6.  Genetic diagnosis by whole exome capture and massively parallel DNA sequencing.

Authors:  Murim Choi; Ute I Scholl; Weizhen Ji; Tiewen Liu; Irina R Tikhonova; Paul Zumbo; Ahmet Nayir; Ayşin Bakkaloğlu; Seza Ozen; Sami Sanjad; Carol Nelson-Williams; Anita Farhi; Shrikant Mane; Richard P Lifton
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-27       Impact factor: 11.205

Review 7.  Human genetics of infectious diseases: between proof of principle and paradigm.

Authors:  Alexandre Alcaïs; Laurent Abel; Jean-Laurent Casanova
Journal:  J Clin Invest       Date:  2009-09       Impact factor: 14.808

8.  Networked buffering: a basic mechanism for distributed robustness in complex adaptive systems.

Authors:  James M Whitacre; Axel Bender
Journal:  Theor Biol Med Model       Date:  2010-06-15       Impact factor: 2.432

9.  Genetic variation shapes protein networks mainly through non-transcriptional mechanisms.

Authors:  Eric J Foss; Dragan Radulovic; Scott A Shaffer; David R Goodlett; Leonid Kruglyak; Antonio Bedalov
Journal:  PLoS Biol       Date:  2011-09-06       Impact factor: 8.029

10.  Herpes simplex virus encephalitis in a patient with complete TLR3 deficiency: TLR3 is otherwise redundant in protective immunity.

Authors:  Yiqi Guo; Magali Audry; Michael Ciancanelli; Laia Alsina; Joana Azevedo; Melina Herman; Esperanza Anguiano; Vanessa Sancho-Shimizu; Lazaro Lorenzo; Elodie Pauwels; Paul Bastard Philippe; Rebeca Pérez de Diego; Annabelle Cardon; Guillaume Vogt; Capucine Picard; Zafitsara Zo Andrianirina; Flore Rozenberg; Pierre Lebon; Sabine Plancoulaine; Marc Tardieu; Emmanuelle Jouanguy; Damien Chaussabel; Frederic Geissmann; Laurent Abel; Jean-Laurent Casanova; Shen-Ying Zhang
Journal:  J Exp Med       Date:  2011-09-12       Impact factor: 14.307

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  2 in total

Review 1.  Investigating the biology of alpha herpesviruses with MS-based proteomics.

Authors:  Esteban A Engel; Ren Song; Orkide O Koyuncu; Lynn W Enquist
Journal:  Proteomics       Date:  2015-05-15       Impact factor: 3.984

2.  MiR-146a down-regulates inflammatory response by targeting TLR3 and TRAF6 in Coxsackievirus B infection.

Authors:  Yanru Fei; Anita Chaulagain; Tianying Wang; Yang Chen; Jinchang Liu; Ming Yi; Ying Wang; Yike Huang; Lexun Lin; Sijia Chen; Weizhen Xu; Lei Tong; Xiaoyu Wu; Dechao Zhao; Fengmin Zhang; Wenran Zhao; Zhaohua Zhong
Journal:  RNA       Date:  2019-11-01       Impact factor: 4.942

  2 in total

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