Literature DB >> 22752182

Tuning the geometries of a de novo blue copper protein by axial interactions.

Daigo Shiga1, Yusuke Hamano, Misato Kamei, Yasuhiro Funahashi, Hideki Masuda, Miyuki Sakaguchi, Takashi Ogura, Toshiki Tanaka.   

Abstract

The axial interactions of Cu(2+) in type 1 copper proteins control the physical characteristics of the proteins. We tuned the geometries of a de novo designed blue copper protein with a four-helical bundle structure. The designed protein axially bound various ligands, such as chloride, phosphate, sulfate, acetate, azide, and imidazole, to Cu(2+), exhibiting a blue or green color. The UV-vis spectral bands were observed at approximately 600 nm and approximately 450 nm, with the A (~450)/A (~600) ratios between 0.14 and 1.58. The stronger axial interaction shifted the geometry of the type 1 copper site from trigonal planar geometry (blue copper) toward a tetrahedral-like geometry (green copper). Resonance Raman spectral analyses showed that the phosphate-bound type had the highest-strength Cu-S bond, similar to that of plastocyanin. The chloride-bound type exhibited features similar to those of stellacyanin and nitrite reductase, and the imidazole-bound type exhibited features similar to those of azurin M121E mutant.

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Year:  2012        PMID: 22752182     DOI: 10.1007/s00775-012-0916-x

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  17 in total

1.  Metal coordination and mechanism of multicopper nitrite reductase.

Authors:  S Suzuki; K Kataoka; K Yamaguchi
Journal:  Acc Chem Res       Date:  2000-10       Impact factor: 22.384

Review 2.  Electronic structures of metal sites in proteins and models: contributions to function in blue copper proteins.

Authors:  Edward I Solomon; Robert K Szilagyi; Serena DeBeer George; Lipika Basumallick
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  Thermodynamic equilibrium between blue and green copper sites and the role of the protein in controlling function.

Authors:  Somdatta Ghosh; Xiangjin Xie; Abhishek Dey; Yan Sun; Charles P Scholes; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-12       Impact factor: 11.205

4.  Structural implications derived from the analysis of electron paramagnetic resonance spectra of natural and artificial copper proteins.

Authors:  J Peisach; W E Blumberg
Journal:  Arch Biochem Biophys       Date:  1974-12       Impact factor: 4.013

5.  The crystal structure of poplar apoplastocyanin at 1.8-A resolution. The geometry of the copper-binding site is created by the polypeptide.

Authors:  T P Garrett; D J Clingeleffer; J M Guss; S J Rogers; H C Freeman
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

6.  Spectroscopic investigation of stellacyanin mutants: axial ligand interactions at the blue copper site.

Authors:  Serena DeBeer George; Lipika Basumallick; Robert K Szilagyi; David W Randall; Michael G Hill; Aram M Nersissian; Joan S Valentine; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

7.  Spectroscopic and density functional studies of the red copper site in nitrosocyanin: role of the protein in determining active site geometric and electronic structure.

Authors:  Lipika Basumallick; Ritimukta Sarangi; Serena DeBeer George; Brad Elmore; Alan B Hooper; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2005-03-16       Impact factor: 15.419

8.  Resonance Raman spectra of plastocyanin and pseudoazurin: evidence for conserved cysteine ligand conformations in cupredoxins (blue copper proteins).

Authors:  J Han; E T Adman; T Beppu; R Codd; H C Freeman; L L Huq; T M Loehr; J Sanders-Loehr
Journal:  Biochemistry       Date:  1991-11-12       Impact factor: 3.162

9.  Water-soluble, recombinant CuA-domain of the cytochrome ba3 subunit II from Thermus thermophilus.

Authors:  C E Slutter; D Sanders; P Wittung; B G Malmström; R Aasa; J H Richards; H B Gray; J A Fee
Journal:  Biochemistry       Date:  1996-03-19       Impact factor: 3.162

10.  Spectroscopic studies of the Met182Thr mutant of nitrite reductase: role of the axial ligand in the geometric and electronic structure of blue and green copper sites.

Authors:  Lipika Basumallick; Robert K Szilagyi; Yiwei Zhao; James P Shapleigh; Charles P Scholes; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2003-12-03       Impact factor: 15.419

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  6 in total

1.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

Review 2.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 3.  Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.

Authors:  Tyler B J Pinter; Karl J Koebke; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-02       Impact factor: 15.336

Review 4.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

5.  Traversing the Red-Green-Blue Color Spectrum in Rationally Designed Cupredoxins.

Authors:  Karl J Koebke; Victor Sosa Alfaro; Tyler B J Pinter; Aniruddha Deb; Nicolai Lehnert; Cédric Tard; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Am Chem Soc       Date:  2020-08-24       Impact factor: 15.419

6.  Clarifying the Copper Coordination Environment in a de Novo Designed Red Copper Protein.

Authors:  Karl J Koebke; Leela Ruckthong; Jennifer L Meagher; Emilie Mathieu; Jill Harland; Aniruddha Deb; Nicolai Lehnert; Clotilde Policar; Cédric Tard; James E Penner-Hahn; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Inorg Chem       Date:  2018-09-18       Impact factor: 5.165

  6 in total

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