Literature DB >> 32786767

Traversing the Red-Green-Blue Color Spectrum in Rationally Designed Cupredoxins.

Karl J Koebke1, Victor Sosa Alfaro1, Tyler B J Pinter1, Aniruddha Deb1, Nicolai Lehnert1, Cédric Tard2, James E Penner-Hahn1, Vincent L Pecoraro1.   

Abstract

Blue copper proteins have a constrained Cu(II) geometry that has proven difficult to recapitulate outside native cupredoxin folds. Previous work has successfully designed green copper proteins which could be tuned blue using exogenous ligands, but the question of how one can create a self-contained blue copper site within a de novo scaffold, especially one removed from a cupredoxin fold, remained. We have recently reported a red copper protein site within a three helical bundle scaffold which we later revisited and determined to be a nitrosocyanin mimic, with a CuHis2CysGlu binding site. We now report efforts to rationally design this construct toward either green or blue copper chromophores using mutation strategies that have proven successful in native cupredoxins. By rotating the metal binding site, we created a de novo green copper protein. This in turn was converted to a blue copper protein by removing an axial methionine. Following this rational sequence, we have successfully created red, green, and blue copper proteins within an alpha helical fold, enabling comparisons for the first time of their structure and function disconnected from the overall cupredoxin fold.

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Year:  2020        PMID: 32786767      PMCID: PMC7484265          DOI: 10.1021/jacs.0c04757

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  53 in total

Review 1.  Interactions between macromolecules and ions: The Hofmeister series.

Authors:  Yanjie Zhang; Paul S Cremer
Journal:  Curr Opin Chem Biol       Date:  2006-10-10       Impact factor: 8.822

Review 2.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

3.  X-ray structure determination and characterization of the Pseudomonas aeruginosa azurin mutant Met121Glu.

Authors:  B G Karlsson; L C Tsai; H Nar; J Sanders-Loehr; N Bonander; V Langer; L Sjölin
Journal:  Biochemistry       Date:  1997-04-08       Impact factor: 3.162

4.  Creation of a type 1 blue copper site within a de novo coiled-coil protein scaffold.

Authors:  Daigo Shiga; Daisuke Nakane; Tomohiko Inomata; Yasuhiro Funahashi; Hideki Masuda; Akihiro Kikuchi; Masayuki Oda; Masanori Noda; Susumu Uchiyama; Kiichi Fukui; Kenji Kanaori; Kunihiko Tajima; Yu Takano; Haruki Nakamura; Toshiki Tanaka
Journal:  J Am Chem Soc       Date:  2010-12-02       Impact factor: 15.419

Review 5.  Spectroscopic methods in bioinorganic chemistry: blue to green to red copper sites.

Authors:  Edward I Solomon
Journal:  Inorg Chem       Date:  2006-10-02       Impact factor: 5.165

6.  Methylated Histidines Alter Tautomeric Preferences that Influence the Rates of Cu Nitrite Reductase Catalysis in Designed Peptides.

Authors:  Karl J Koebke; Fangting Yu; Casey Van Stappen; Tyler B J Pinter; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Am Chem Soc       Date:  2019-05-06       Impact factor: 15.419

7.  Spectroscopic identification of different types of copper centers generated in synthetic four-helix bundle proteins.

Authors:  Robert Schnepf; Wolfgang Haehnel; Karl Wieghardt; Peter Hildebrandt
Journal:  J Am Chem Soc       Date:  2004-11-10       Impact factor: 15.419

8.  Resonance Raman spectroscopy of the azurin His117Gly mutant. Interconversion of type 1 and type 2 copper sites through exogenous ligands.

Authors:  T den Blaauwen; C W Hoitink; G W Canters; J Han; T M Loehr; J Sanders-Loehr
Journal:  Biochemistry       Date:  1993-11-23       Impact factor: 3.162

Review 9.  Electron flow through metalloproteins.

Authors:  Jay R Winkler; Harry B Gray
Journal:  Chem Rev       Date:  2013-11-27       Impact factor: 60.622

10.  Reversible S-nitrosylation in an engineered azurin.

Authors:  Shiliang Tian; Jing Liu; Ryan E Cowley; Parisa Hosseinzadeh; Nicholas M Marshall; Yang Yu; Howard Robinson; Mark J Nilges; Ninian J Blackburn; Edward I Solomon; Yi Lu
Journal:  Nat Chem       Date:  2016-04-25       Impact factor: 24.427

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  2 in total

1.  Nitrite reductase activity within an antiparallel de novo scaffold.

Authors:  Karl J Koebke; Alison G Tebo; Elizabeth C Manickas; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2021-09-06       Impact factor: 3.358

Review 2.  Artificial Metalloproteins: At the Interface between Biology and Chemistry.

Authors:  Spencer A Kerns; Ankita Biswas; Natalie M Minnetian; A S Borovik
Journal:  JACS Au       Date:  2022-06-02
  2 in total

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