Literature DB >> 23733951

Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance.

Marcelo Kern1, John E McGeehan, Simon D Streeter, Richard N A Martin, Katrin Besser, Luisa Elias, Will Eborall, Graham P Malyon, Christina M Payne, Michael E Himmel, Kirk Schnorr, Gregg T Beckham, Simon M Cragg, Neil C Bruce, Simon J McQueen-Mason.   

Abstract

Nature uses a diversity of glycoside hydrolase (GH) enzymes to convert polysaccharides to sugars. As lignocellulosic biomass deconstruction for biofuel production remains costly, natural GH diversity offers a starting point for developing industrial enzymes, and fungal GH family 7 (GH7) cellobiohydrolases, in particular, provide significant hydrolytic potential in industrial mixtures. Recently, GH7 enzymes have been found in other kingdoms of life besides fungi, including in animals and protists. Here, we describe the in vivo spatial expression distribution, properties, and structure of a unique endogenous GH7 cellulase from an animal, the marine wood borer Limnoria quadripunctata (LqCel7B). RT-quantitative PCR and Western blot studies show that LqCel7B is expressed in the hepatopancreas and secreted into the gut for wood degradation. We produced recombinant LqCel7B, with which we demonstrate that LqCel7B is a cellobiohydrolase and obtained four high-resolution crystal structures. Based on a crystallographic and computational comparison of LqCel7B to the well-characterized Hypocrea jecorina GH7 cellobiohydrolase, LqCel7B exhibits an extended substrate-binding motif at the tunnel entrance, which may aid in substrate acquisition and processivity. Interestingly, LqCel7B exhibits striking surface charges relative to fungal GH7 enzymes, which likely results from evolution in marine environments. We demonstrate that LqCel7B stability and activity remain unchanged, or increase at high salt concentration, and that the L. quadripunctata GH mixture generally contains cellulolytic enzymes with highly acidic surface charge compared with enzymes derived from terrestrial microbes. Overall, this study suggests that marine cellulases offer significant potential for utilization in high-solids industrial biomass conversion processes.

Entities:  

Keywords:  carbohydrate degrading enzymes; gribble

Mesh:

Substances:

Year:  2013        PMID: 23733951      PMCID: PMC3690837          DOI: 10.1073/pnas.1301502110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  Enzymatic in situ saccharification of cellulose in aqueous-ionic liquid media.

Authors:  Noriho Kamiya; Yuichi Matsushita; Misa Hanaki; Kazunori Nakashima; Mamiko Narita; Masahiro Goto; Haruo Takahashi
Journal:  Biotechnol Lett       Date:  2008-02-05       Impact factor: 2.461

2.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

Review 3.  From cellulosomes to cellulosomics.

Authors:  Edward A Bayer; Raphael Lamed; Bryan A White; Harry J Flint
Journal:  Chem Rec       Date:  2008       Impact factor: 6.771

Review 4.  Deconstruction of lignocellulosic biomass to fuels and chemicals.

Authors:  Shishir P S Chundawat; Gregg T Beckham; Michael E Himmel; Bruce E Dale
Journal:  Annu Rev Chem Biomol Eng       Date:  2011       Impact factor: 11.059

5.  Kinetic parameters and mode of action of the cellobiohydrolases produced by Talaromyces emersonii.

Authors:  Maria G Tuohy; Daniel J Walsh; Patrick G Murray; Marc Claeyssens; Michelle M Cuffe; Angela V Savage; Michael P Coughlan
Journal:  Biochim Biophys Acta       Date:  2002-04-29

6.  Production and characterization of cellobiohydrolase from a novel strain of Penicillium purpurogenum KJS506.

Authors:  Kyoung-Mi Lee; Ah-Reum Joo; Marimuthu Jeya; Kyoung-Min Lee; Hee-Jung Moon; Jung-Kul Lee
Journal:  Appl Biochem Biotechnol       Date:  2010-06-27       Impact factor: 2.926

Review 7.  Heterogeneity in the chemistry, structure and function of plant cell walls.

Authors:  Rachel A Burton; Michael J Gidley; Geoffrey B Fincher
Journal:  Nat Chem Biol       Date:  2010-09-17       Impact factor: 15.040

8.  Additive empirical force field for hexopyranose monosaccharides.

Authors:  Olgun Guvench; Shannon N Greene; Ganesh Kamath; John W Brady; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2008-11-30       Impact factor: 3.376

9.  Crystal structures of Melanocarpus albomyces cellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding.

Authors:  Tarja Parkkinen; Anu Koivula; Jari Vehmaanperä; Juha Rouvinen
Journal:  Protein Sci       Date:  2008-05-21       Impact factor: 6.725

10.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16
View more
  30 in total

1.  The three-dimensional structure of the cellobiohydrolase Cel7A from Aspergillus fumigatus at 1.5 Å resolution.

Authors:  Olga V Moroz; Michelle Maranta; Tarana Shaghasi; Paul V Harris; Keith S Wilson; Gideon J Davies
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

2.  Engineering of a highly thermostable endoglucanase from the GH7 family of Bipolaris sorokiniana for higher catalytic efficiency.

Authors:  Shritama Aich; Supratim Datta
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-10       Impact factor: 4.813

3.  Probing substrate interactions in the active tunnel of a catalytically deficient cellobiohydrolase (Cel7).

Authors:  Francieli Colussi; Trine H Sørensen; Kadri Alasepp; Jeppe Kari; Nicolaj Cruys-Bagger; Michael S Windahl; Johan P Olsen; Kim Borch; Peter Westh
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

4.  De novo transcriptome assembly of the midgut glands of herbivorous land crabs, Chiromantes haematocheir, and identification of laccase genes involved in lignin degradation.

Authors:  Katsuhide Miyake; Yasunori Baba
Journal:  J Comp Physiol B       Date:  2022-01-28       Impact factor: 2.200

5.  Biochemical and Structural Characterizations of Two Dictyostelium Cellobiohydrolases from the Amoebozoa Kingdom Reveal a High Level of Conservation between Distant Phylogenetic Trees of Life.

Authors:  Sarah E Hobdey; Brandon C Knott; Majid Haddad Momeni; Larry E Taylor; Anna S Borisova; Kara K Podkaminer; Todd A VanderWall; Michael E Himmel; Stephen R Decker; Gregg T Beckham; Jerry Ståhlberg
Journal:  Appl Environ Microbiol       Date:  2016-05-16       Impact factor: 4.792

6.  The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion.

Authors:  Damian Kao; Alvina G Lai; Evangelia Stamataki; Silvana Rosic; Nikolaos Konstantinides; Erin Jarvis; Alessia Di Donfrancesco; Natalia Pouchkina-Stancheva; Marie Sémon; Marco Grillo; Heather Bruce; Suyash Kumar; Igor Siwanowicz; Andy Le; Andrew Lemire; Michael B Eisen; Cassandra Extavour; William E Browne; Carsten Wolff; Michalis Averof; Nipam H Patel; Peter Sarkies; Anastasios Pavlopoulos; Aziz Aboobaker
Journal:  Elife       Date:  2016-11-16       Impact factor: 8.140

7.  Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts.

Authors:  Amal Ben Ayed; Geoffroy Saint-Genis; Laurent Vallon; Dolores Linde; Annick Turbé-Doan; Mireille Haon; Marianne Daou; Emmanuel Bertrand; Craig B Faulds; Giuliano Sciara; Martino Adamo; Roland Marmeisse; Sophie Comtet-Marre; Pierre Peyret; Danis Abrouk; Francisco J Ruiz-Dueñas; Cyril Marchand; Mylène Hugoni; Patricia Luis; Tahar Mechichi; Eric Record
Journal:  J Fungi (Basel)       Date:  2021-04-21

8.  Biogeography of wood-boring crustaceans (Isopoda: Limnoriidae) established in European coastal waters.

Authors:  Luísa M S Borges; Lucas M Merckelbach; Simon M Cragg
Journal:  PLoS One       Date:  2014-10-14       Impact factor: 3.240

9.  Identification and characterization of a novel glucomannanase from Paenibacillus polymyxa.

Authors:  Kuikui Li; Chaofeng Jiang; Haidong Tan; Junyan Li; Yali Xu; Dejian Tang; Xiaoming Zhao; Qishun Liu; Jianguo Li; Heng Yin
Journal:  3 Biotech       Date:  2021-02-18       Impact factor: 2.406

10.  Expression, crystal structure and cellulase activity of the thermostable cellobiohydrolase Cel7A from the fungus Humicola grisea var. thermoidea.

Authors:  Majid Haddad Momeni; Frits Goedegebuur; Henrik Hansson; Saeid Karkehabadi; Glareh Askarieh; Colin Mitchinson; Edmundo A Larenas; Jerry Ståhlberg; Mats Sandgren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-08-29
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.