Literature DB >> 22733578

Perspectives on the ARE as it turns 25 years old.

Daniel Beisang1, Paul R Bohjanen.   

Abstract

The AU-rich element (ARE) was discovered in 1986 as a conserved mRNA sequence found in the 3' untranslated region of the TNF-α transcript and other transcripts encoding cytokines and inflammatory mediators. Shortly thereafter, the ARE was shown to function as a regulator of mRNA degradation, and AREs were later shown to regulate other posttranscriptional mechanisms such as translation and mRNA localization. AREs coordinately regulate networks of chemokine, cytokine, and growth regulatory transcripts involved in cellular activation, proliferation, and inflammation. ARE-mediated regulation is carried out by a host of ARE-binding proteins, whose activity is regulated in a cell type and activation-dependent manner. The last 25 years of ARE research has offered insight into the mechanisms and regulation of ARE-mediated mRNA decay, and has provided a road map for the discovery of additional mRNA regulatory motifs. The future of ARE research will transition from a discovery phase to a phase focused on translating basic biological findings into novel therapeutic targets. Our understanding of ARE-mediated gene regulation and posttranscriptional control has implications for many fields of study including developmental biology, neuroscience, immunobiology, and cancer biology.
Copyright © 2012 John Wiley & Sons, Ltd.

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Year:  2012        PMID: 22733578      PMCID: PMC4126804          DOI: 10.1002/wrna.1125

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  109 in total

Review 1.  RNA regulons: coordination of post-transcriptional events.

Authors:  Jack D Keene
Journal:  Nat Rev Genet       Date:  2007-07       Impact factor: 53.242

2.  microRNAs: a safeguard against turmoil?

Authors:  Anthony K L Leung; Phillip A Sharp
Journal:  Cell       Date:  2007-08-24       Impact factor: 41.582

3.  AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2.

Authors:  Shobha Vasudevan; Joan A Steitz
Journal:  Cell       Date:  2007-03-23       Impact factor: 41.582

4.  Tristetraprolin recruits functional mRNA decay complexes to ARE sequences.

Authors:  Heidi H Hau; Richard J Walsh; Rachel L Ogilvie; Darlisha A Williams; Cavan S Reilly; Paul R Bohjanen
Journal:  J Cell Biochem       Date:  2007-04-15       Impact factor: 4.429

5.  Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR.

Authors:  Henry S Kim; Yuki Kuwano; Ming Zhan; Rudolf Pullmann; Krystyna Mazan-Mamczarz; Huai Li; Nancy Kedersha; Paul Anderson; Matthew C J Wilce; Myriam Gorospe; Jacqueline A Wilce
Journal:  Mol Cell Biol       Date:  2007-08-06       Impact factor: 4.272

6.  An interaction between two RNA binding proteins, Nab2 and Pub1, links mRNA processing/export and mRNA stability.

Authors:  Luciano H Apponi; Seth M Kelly; Michelle T Harreman; Alexander N Lehner; Anita H Corbett; Sandro R Valentini
Journal:  Mol Cell Biol       Date:  2007-07-16       Impact factor: 4.272

7.  Tristetraprolin down-regulates interleukin-8 and vascular endothelial growth factor in malignant glioma cells.

Authors:  Esther Suswam; Yanyan Li; Xiaowen Zhang; G Yancey Gillespie; Xuelin Li; John J Shacka; Liang Lu; Lei Zheng; Peter H King
Journal:  Cancer Res       Date:  2008-02-01       Impact factor: 12.701

8.  Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1.

Authors:  Irina A Vlasova; Nuzha M Tahoe; Danhua Fan; Ola Larsson; Bernd Rattenbacher; Julius R Sternjohn; Jayprakash Vasdewani; George Karypis; Cavan S Reilly; Peter B Bitterman; Paul R Bohjanen
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

9.  Increased steady-state levels of CUGBP1 in myotonic dystrophy 1 are due to PKC-mediated hyperphosphorylation.

Authors:  N Muge Kuyumcu-Martinez; Guey-Shin Wang; Thomas A Cooper
Journal:  Mol Cell       Date:  2007-10-12       Impact factor: 17.970

Review 10.  Iron-regulatory proteins: molecular biology and pathophysiological implications.

Authors:  Gaetano Cairo; Stefania Recalcati
Journal:  Expert Rev Mol Med       Date:  2007-12-05       Impact factor: 5.600

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  30 in total

Review 1.  Implications of polyadenylation in health and disease.

Authors:  Ana Curinha; Sandra Oliveira Braz; Isabel Pereira-Castro; Andrea Cruz; Alexandra Moreira
Journal:  Nucleus       Date:  2014-10-31       Impact factor: 4.197

Review 2.  Post-transcriptional regulation of cytokine signaling by AU-rich and GU-rich elements.

Authors:  Irina Vlasova-St Louis; Paul R Bohjanen
Journal:  J Interferon Cytokine Res       Date:  2014-04       Impact factor: 2.607

Review 3.  Post-transcriptional regulation of gene expression in innate immunity.

Authors:  Susan Carpenter; Emiliano P Ricci; Blandine C Mercier; Melissa J Moore; Katherine A Fitzgerald
Journal:  Nat Rev Immunol       Date:  2014-06       Impact factor: 53.106

4.  The mRNA-destabilizing protein Tristetraprolin targets "meiosis arrester" Nppc mRNA in mammalian preovulatory follicles.

Authors:  Guangyin Xi; Lei An; Wenjing Wang; Jing Hao; Qianying Yang; Lizhu Ma; Jinlun Lu; Yue Wang; Wenjuan Wang; Wei Zhao; Juan Liu; Mingyao Yang; Xiaodong Wang; Zhenni Zhang; Chao Zhang; Meiqiang Chu; Yuan Yue; Fusheng Yao; Meijia Zhang; Jianhui Tian
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-01       Impact factor: 11.205

5.  Sustained stabilization of Interleukin-8 mRNA in human macrophages.

Authors:  Linah Mahmoud; Fatma Al-Enezi; Maher Al-Saif; Arjumand Warsy; Khalid S A Khabar; Edward G Hitti
Journal:  RNA Biol       Date:  2014-02-05       Impact factor: 4.652

Review 6.  Tristetraprolin (TTP): interactions with mRNA and proteins, and current thoughts on mechanisms of action.

Authors:  Seth A Brooks; Perry J Blackshear
Journal:  Biochim Biophys Acta       Date:  2013-02-18

Review 7.  RNA-binding proteins in eye development and disease: implication of conserved RNA granule components.

Authors:  Soma Dash; Archana D Siddam; Carrie E Barnum; Sarath Chandra Janga; Salil A Lachke
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-01       Impact factor: 9.957

8.  LARP4 Is Regulated by Tumor Necrosis Factor Alpha in a Tristetraprolin-Dependent Manner.

Authors:  Sandy Mattijssen; Richard J Maraia
Journal:  Mol Cell Biol       Date:  2015-12-07       Impact factor: 4.272

9.  Interactions among glomerulus infiltrating macrophages and intrinsic cells via cytokines in chronic lupus glomerulonephritis.

Authors:  Sun-Sang J Sung; Shu Man Fu
Journal:  J Autoimmun       Date:  2019-09-05       Impact factor: 7.094

Review 10.  The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein.

Authors:  Michael R White; Elsa D Garcin
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-12       Impact factor: 9.957

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