Literature DB >> 24854588

Post-transcriptional regulation of gene expression in innate immunity.

Susan Carpenter1, Emiliano P Ricci2, Blandine C Mercier2, Melissa J Moore3, Katherine A Fitzgerald4.   

Abstract

Innate immune responses combat infectious microorganisms by inducing inflammatory responses, antimicrobial pathways and adaptive immunity. Multiple genes within each of these functional categories are coordinately and temporally regulated in response to distinct external stimuli. The substantial potential of these responses to drive pathological inflammation and tissue damage highlights the need for rigorous control of these responses. Although transcriptional control of inflammatory gene expression has been studied extensively, the importance of post-transcriptional regulation of these processes is less well defined. In this Review, we discuss the regulatory mechanisms that occur at the level of mRNA splicing, mRNA polyadenylation, mRNA stability and protein translation, and that have instrumental roles in controlling both the magnitude and duration of the inflammatory response.

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Year:  2014        PMID: 24854588     DOI: 10.1038/nri3682

Source DB:  PubMed          Journal:  Nat Rev Immunol        ISSN: 1474-1733            Impact factor:   53.106


  136 in total

1.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

2.  A novel splice variant of mouse interleukin-1-receptor-associated kinase-1 (IRAK-1) activates nuclear factor-kappaB (NF-kappaB) and c-Jun N-terminal kinase (JNK).

Authors:  Ken Yanagisawa; Kenji Tago; Morisada Hayakawa; Motomichi Ohki; Hiroyuki Iwahana; Shin-Ichi Tominaga
Journal:  Biochem J       Date:  2003-02-15       Impact factor: 3.857

3.  RNA splicing control: yet another gene regulatory role for long nuclear noncoding RNAs.

Authors:  Xinying Zong; Vidisha Tripathi; Kannanganattu V Prasanth
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

4.  Functional characterization of interferon regulatory factor 3a (IRF-3a), an alternative splice isoform of IRF-3.

Authors:  A Y Karpova; L V Ronco; P M Howley
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

5.  TIA-1 is a translational silencer that selectively regulates the expression of TNF-alpha.

Authors:  M Piecyk; S Wax; A R Beck; N Kedersha; M Gupta; B Maritim; S Chen; C Gueydan; V Kruys; M Streuli; P Anderson
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

6.  A novel splice variant of interleukin-1 receptor (IL-1R)-associated kinase 1 plays a negative regulatory role in Toll/IL-1R-induced inflammatory signaling.

Authors:  Navin Rao; Steven Nguyen; Karen Ngo; Wai-Ping Fung-Leung
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

7.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

8.  The TSC-mTOR signaling pathway regulates the innate inflammatory response.

Authors:  Thomas Weichhart; Giuseppina Costantino; Marko Poglitsch; Margit Rosner; Maximilian Zeyda; Karl M Stuhlmeier; Thomas Kolbe; Thomas M Stulnig; Walter H Hörl; Markus Hengstschläger; Mathias Müller; Marcus D Säemann
Journal:  Immunity       Date:  2008-10-09       Impact factor: 31.745

9.  Alternate transcription of the Toll-like receptor signaling cascade.

Authors:  Christine A Wells; Alistair M Chalk; Alistair Forrest; Darrin Taylor; Nic Waddell; Kate Schroder; S Roy Himes; Geoffrey Faulkner; Sandra Lo; Takeya Kasukawa; Hideya Kawaji; Chikatoshi Kai; Jun Kawai; Shintaro Katayama; Piero Carninci; Yoshihide Hayashizaki; David A Hume; Sean M Grimmond
Journal:  Genome Biol       Date:  2006-02-17       Impact factor: 13.583

10.  An optimized streptavidin-binding RNA aptamer for purification of ribonucleoprotein complexes identifies novel ARE-binding proteins.

Authors:  Kathrin Leppek; Georg Stoecklin
Journal:  Nucleic Acids Res       Date:  2013-10-23       Impact factor: 16.971

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  140 in total

Review 1.  Self-regulation and cross-regulation of pattern-recognition receptor signalling in health and disease.

Authors:  Xuetao Cao
Journal:  Nat Rev Immunol       Date:  2016-01       Impact factor: 53.106

2.  RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes.

Authors:  Heeyoun Bunch; Brian P Lawney; Adam Burkholder; Duanduan Ma; Xiaofeng Zheng; Shmulik Motola; David C Fargo; Stuart S Levine; Yaoyu E Wang; Guang Hu
Journal:  Genomics       Date:  2016-07-16       Impact factor: 5.736

3.  Identification of Changing Ribosome Protein Compositions using Mass Spectrometry.

Authors:  Parimal Samir; Christopher M Browne; Ming Sun; Bingxin Shen; Wen Li; Joachim Frank; Andrew J Link
Journal:  Proteomics       Date:  2018-10       Impact factor: 3.984

4.  Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation.

Authors:  Zhibo Yu; Juncheng Lin; Qingshun Quinn Li
Journal:  Plant Cell       Date:  2019-08-19       Impact factor: 11.277

5.  Induced transcription and stability of CELF2 mRNA drives widespread alternative splicing during T-cell signaling.

Authors:  Michael J Mallory; Samuel J Allon; Jinsong Qiu; Matthew R Gazzara; Iulia Tapescu; Nicole M Martinez; Xiang-Dong Fu; Kristen W Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

Review 6.  The emerging regulatory roles of noncoding RNAs in immune function of fish: MicroRNAs versus long noncoding RNAs.

Authors:  Haitham G Abo-Al-Ela
Journal:  Mol Genet Genomics       Date:  2021-04-27       Impact factor: 3.291

7.  Identify gene expression pattern change at transcriptional and post-transcriptional levels.

Authors:  Ji-Gang Zhang; Chao Xu; Lan Zhang; Wei Zhu; Hui Shen; Hong-Wen Deng
Journal:  Transcription       Date:  2019-02-05

Review 8.  Translating the Untranslated Region.

Authors:  Johannes Schwerk; Ram Savan
Journal:  J Immunol       Date:  2015-10-01       Impact factor: 5.422

9.  Distinct microenvironmental cues stimulate divergent TLR4-mediated signaling pathways in macrophages.

Authors:  Anna M Piccinini; Lorena Zuliani-Alvarez; Jenny M P Lim; Kim S Midwood
Journal:  Sci Signal       Date:  2016-08-30       Impact factor: 8.192

10.  miR-155 targets Caspase-3 mRNA in activated macrophages.

Authors:  Rebecca De Santis; Anke Liepelt; Jana C Mossanen; Anne Dueck; Nadine Simons; Antje Mohs; Christian Trautwein; Gunter Meister; Gernot Marx; Antje Ostareck-Lederer; Dirk H Ostareck
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

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