Literature DB >> 22719441

N'-[Bis(benzyl-sulfan-yl)methyl-idene]benzohydrazide.

Shahedeh Tayamon, Thahira Begum S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse, Edward R T Tiekink.   

Abstract

In the title hydrazonodithio-ate, C(21)H(19)N(3)OS(2), the n class="Chemical">amide group is twisted out of the plane through the S(2)C=N atoms: the C-N-N-C torsion angle is 139.71 (13)°. The pyridine ring forms dihedral angles of 52.96 (8) and 86.46 (8)° with the phenyl rings, and the latter are approximately orthogonal [dihedral angle = 76.42 (9)°]. Supra-molecular chains sustained by N-H⋯O hydrogen bonds and propagated by glide symmetry along the c axis are found in the crystal structure. The chains are consolidated into a three-dimensional architecture by C-H⋯O and C-H⋯N inter-actions.

Entities:  

Year:  2012        PMID: 22719441      PMCID: PMC3379243          DOI: 10.1107/S1600536812019472

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the coordination chemistry of dithio­carbazate derivatives, see: Tarafder et al. (2002 ▶); Ravoof et al. (2010 ▶). For related syntheses, see: Ali & Tarafder (1977 ▶); Ali et al. (2001 ▶); Manan et al. (2012 ▶). For related structures, see: Jasinski et al. (2010 ▶); Singh et al. (2007 ▶).

Experimental

Crystal data

C21H19N3OS2 M = 393.51 Monoclinic, a = 11.2593 (4) Å b = 21.2182 (7) Å c = 8.6041 (3) Å β = 103.678 (3)° V = 1997.24 (12) Å3 Z = 4 Cu Kα radiation μ = 2.54 mm−1 T = 150 K 0.50 × 0.36 × 0.16 mm

Data collection

Agilent Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.42, T max = 0.67 38338 measured reflections 3867 independent reflections 3715 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.097 S = 1.03 3867 reflections 247 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019472/hb6755sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019472/hb6755Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019472/hb6755Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19N3OS2F(000) = 824
Mr = 393.51Dx = 1.309 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 17900 reflections
a = 11.2593 (4) Åθ = 4–71°
b = 21.2182 (7) ŵ = 2.54 mm1
c = 8.6041 (3) ÅT = 150 K
β = 103.678 (3)°Block, dark yellow
V = 1997.24 (12) Å30.50 × 0.36 × 0.16 mm
Z = 4
Agilent Xcaliber Eos Gemini diffractometer3867 independent reflections
Radiation source: fine-focus sealed tube3715 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
Detector resolution: 16.1952 pixels mm-1θmax = 71.4°, θmin = 4.0°
ω/2θ scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −24→26
Tmin = 0.42, Tmax = 0.67l = −10→10
38338 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0631P)2 + 0.6548P] where P = (Fo2 + 2Fc2)/3
3867 reflections(Δ/σ)max = 0.001
247 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.58342 (3)0.395419 (15)0.24637 (4)0.02644 (11)
S20.37808 (3)0.403747 (16)0.41378 (4)0.03091 (12)
O10.55367 (12)0.19229 (5)0.45894 (12)0.0423 (3)
N10.45622 (11)0.29676 (5)0.32219 (13)0.0266 (2)
N20.53822 (10)0.26152 (5)0.25652 (13)0.0246 (2)
H2N0.5455 (15)0.2700 (8)0.161 (2)0.030*
N30.82288 (13)0.08675 (8)0.1580 (2)0.0510 (4)
C10.47186 (11)0.35652 (7)0.32465 (14)0.0240 (3)
C20.58359 (14)0.47567 (7)0.32153 (18)0.0316 (3)
H2A0.50160.49480.28450.038*
H2B0.60560.47580.43990.038*
C30.67684 (13)0.51237 (7)0.25762 (17)0.0288 (3)
C40.64021 (15)0.55501 (9)0.1339 (2)0.0423 (4)
H40.55560.56050.08670.051*
C50.72615 (19)0.58997 (10)0.0779 (2)0.0525 (5)
H50.70010.6193−0.00680.063*
C60.84883 (17)0.58206 (9)0.1453 (2)0.0465 (4)
H60.90760.60570.10690.056*
C70.88623 (15)0.53955 (8)0.2688 (2)0.0421 (4)
H70.97090.53410.31550.051*
C80.80055 (14)0.50489 (7)0.32481 (19)0.0351 (3)
H80.82690.47580.40990.042*
C90.27606 (13)0.34592 (7)0.47123 (17)0.0297 (3)
H9A0.32190.30630.50340.036*
H9B0.24870.36200.56510.036*
C100.16574 (13)0.33186 (7)0.33872 (17)0.0308 (3)
C110.15710 (15)0.27626 (9)0.2525 (2)0.0469 (4)
H110.22160.24630.27660.056*
C120.05412 (18)0.26418 (11)0.1306 (3)0.0620 (6)
H120.04890.22610.07120.074*
C13−0.04034 (18)0.30698 (12)0.0955 (2)0.0582 (5)
H13−0.11020.29860.01160.070*
C14−0.03337 (18)0.36186 (10)0.1820 (2)0.0555 (5)
H14−0.09890.39120.15910.067*
C150.06947 (16)0.37429 (8)0.3028 (2)0.0441 (4)
H150.07410.41240.36180.053*
C160.57822 (13)0.20778 (6)0.33232 (15)0.0262 (3)
C170.66171 (12)0.16710 (7)0.26297 (16)0.0277 (3)
C180.72075 (14)0.18668 (8)0.14762 (18)0.0352 (3)
H180.70770.22770.10260.042*
C190.79978 (15)0.14459 (10)0.0994 (2)0.0475 (4)
H190.83970.15810.01950.057*
C200.76652 (16)0.06886 (9)0.2706 (2)0.0489 (4)
H200.78240.02780.31440.059*
C210.68633 (15)0.10680 (7)0.3272 (2)0.0381 (4)
H210.64870.09210.40820.046*
U11U22U33U12U13U23
S10.02696 (19)0.02388 (19)0.03094 (19)−0.00467 (12)0.01177 (14)−0.00630 (12)
S20.0295 (2)0.02387 (19)0.0439 (2)−0.00234 (12)0.01763 (16)−0.00832 (13)
O10.0760 (9)0.0293 (6)0.0282 (5)0.0116 (5)0.0256 (5)0.0044 (4)
N10.0300 (6)0.0239 (6)0.0292 (6)0.0011 (4)0.0134 (5)−0.0024 (4)
N20.0309 (6)0.0230 (6)0.0232 (5)0.0012 (4)0.0129 (4)−0.0005 (4)
N30.0308 (7)0.0560 (10)0.0626 (10)0.0119 (7)0.0037 (7)−0.0243 (8)
C10.0233 (6)0.0253 (7)0.0238 (6)−0.0008 (5)0.0067 (5)−0.0035 (5)
C20.0332 (7)0.0232 (7)0.0420 (8)−0.0061 (5)0.0159 (6)−0.0090 (6)
C30.0312 (7)0.0242 (7)0.0328 (7)−0.0057 (5)0.0115 (6)−0.0065 (5)
C40.0343 (8)0.0482 (10)0.0408 (8)−0.0068 (7)0.0017 (6)0.0066 (7)
C50.0559 (11)0.0585 (12)0.0407 (9)−0.0109 (9)0.0067 (8)0.0181 (8)
C60.0450 (9)0.0502 (10)0.0493 (9)−0.0164 (8)0.0213 (8)0.0037 (8)
C70.0292 (8)0.0413 (9)0.0567 (10)−0.0062 (7)0.0123 (7)0.0017 (7)
C80.0325 (8)0.0301 (8)0.0432 (8)−0.0020 (6)0.0096 (6)0.0034 (6)
C90.0297 (7)0.0292 (7)0.0340 (7)−0.0023 (5)0.0153 (6)−0.0026 (6)
C100.0312 (7)0.0316 (7)0.0339 (7)−0.0053 (6)0.0166 (6)−0.0028 (6)
C110.0328 (8)0.0466 (10)0.0657 (11)−0.0076 (7)0.0207 (8)−0.0230 (9)
C120.0445 (10)0.0750 (14)0.0714 (13)−0.0194 (10)0.0237 (9)−0.0421 (11)
C130.0388 (10)0.0868 (15)0.0471 (10)−0.0165 (10)0.0069 (8)−0.0133 (10)
C140.0430 (10)0.0600 (12)0.0576 (11)0.0036 (9)0.0004 (8)0.0024 (9)
C150.0433 (9)0.0379 (9)0.0487 (9)0.0024 (7)0.0058 (7)−0.0035 (7)
C160.0341 (7)0.0230 (7)0.0217 (6)−0.0012 (5)0.0071 (5)−0.0037 (5)
C170.0261 (7)0.0296 (7)0.0246 (6)0.0005 (5)0.0006 (5)−0.0084 (5)
C180.0296 (7)0.0448 (9)0.0314 (7)0.0052 (6)0.0073 (6)−0.0037 (6)
C190.0301 (8)0.0687 (12)0.0451 (9)0.0065 (8)0.0116 (7)−0.0148 (9)
C200.0382 (9)0.0370 (9)0.0662 (11)0.0098 (7)0.0018 (8)−0.0138 (8)
C210.0374 (8)0.0283 (8)0.0465 (9)0.0024 (6)0.0059 (7)−0.0062 (6)
S1—C11.7643 (13)C8—H80.9500
S1—C21.8213 (14)C9—C101.504 (2)
S2—C11.7579 (13)C9—H9A0.9900
S2—C91.8270 (14)C9—H9B0.9900
O1—C161.2304 (17)C10—C111.385 (2)
N1—C11.2795 (18)C10—C151.387 (2)
N1—N21.4063 (15)C11—C121.391 (3)
N2—C161.3376 (18)C11—H110.9500
N2—H2N0.867 (18)C12—C131.377 (3)
N3—C201.333 (3)C12—H120.9500
N3—C191.329 (3)C13—C141.374 (3)
C2—C31.5113 (19)C13—H130.9500
C2—H2A0.9900C14—C151.386 (3)
C2—H2B0.9900C14—H140.9500
C3—C81.385 (2)C15—H150.9500
C3—C41.384 (2)C16—C171.5001 (18)
C4—C51.392 (2)C17—C181.383 (2)
C4—H40.9500C17—C211.395 (2)
C5—C61.376 (3)C18—C191.391 (2)
C5—H50.9500C18—H180.9500
C6—C71.382 (3)C19—H190.9500
C6—H60.9500C20—C211.381 (2)
C7—C81.387 (2)C20—H200.9500
C7—H70.9500C21—H210.9500
C1—S1—C2104.06 (6)S2—C9—H9B109.0
C1—S2—C9102.48 (7)H9A—C9—H9B107.8
C1—N1—N2115.64 (11)C11—C10—C15118.79 (15)
C16—N2—N1115.76 (11)C11—C10—C9121.06 (14)
C16—N2—H2N123.0 (12)C15—C10—C9120.14 (14)
N1—N2—H2N119.4 (11)C10—C11—C12120.09 (18)
C20—N3—C19117.05 (15)C10—C11—H11120.0
N1—C1—S2118.53 (10)C12—C11—H11120.0
N1—C1—S1124.39 (10)C13—C12—C11120.47 (18)
S2—C1—S1117.07 (8)C13—C12—H12119.8
C3—C2—S1107.16 (9)C11—C12—H12119.8
C3—C2—H2A110.3C12—C13—C14119.84 (18)
S1—C2—H2A110.3C12—C13—H13120.1
C3—C2—H2B110.3C14—C13—H13120.1
S1—C2—H2B110.3C13—C14—C15119.87 (19)
H2A—C2—H2B108.5C13—C14—H14120.1
C8—C3—C4118.91 (14)C15—C14—H14120.1
C8—C3—C2120.38 (13)C14—C15—C10120.92 (17)
C4—C3—C2120.69 (13)C14—C15—H15119.5
C3—C4—C5120.62 (16)C10—C15—H15119.5
C3—C4—H4119.7O1—C16—N2122.64 (13)
C5—C4—H4119.7O1—C16—C17119.44 (12)
C6—C5—C4119.99 (16)N2—C16—C17117.84 (12)
C6—C5—H5120.0C18—C17—C21118.39 (14)
C4—C5—H5120.0C18—C17—C16124.44 (13)
C5—C6—C7119.77 (15)C21—C17—C16117.05 (13)
C5—C6—H6120.1C17—C18—C19118.11 (16)
C7—C6—H6120.1C17—C18—H18120.9
C6—C7—C8120.20 (16)C19—C18—H18120.9
C6—C7—H7119.9N3—C19—C18124.13 (17)
C8—C7—H7119.9N3—C19—H19117.9
C3—C8—C7120.51 (15)C18—C19—H19117.9
C3—C8—H8119.7N3—C20—C21123.60 (18)
C7—C8—H8119.7N3—C20—H20118.2
C10—C9—S2112.79 (10)C21—C20—H20118.2
C10—C9—H9A109.0C20—C21—C17118.70 (17)
S2—C9—H9A109.0C20—C21—H21120.7
C10—C9—H9B109.0C17—C21—H21120.6
C1—N1—N2—C16139.71 (13)C9—C10—C11—C12179.87 (16)
N2—N1—C1—S2−176.89 (9)C10—C11—C12—C13−0.5 (3)
N2—N1—C1—S12.25 (17)C11—C12—C13—C14−0.5 (3)
C9—S2—C1—N1−2.38 (12)C12—C13—C14—C150.9 (3)
C9—S2—C1—S1178.42 (7)C13—C14—C15—C10−0.4 (3)
C2—S1—C1—N1−168.24 (12)C11—C10—C15—C14−0.6 (3)
C2—S1—C1—S210.91 (9)C9—C10—C15—C14−179.43 (16)
C1—S1—C2—C3−179.46 (10)N1—N2—C16—O1−5.9 (2)
S1—C2—C3—C8−76.56 (15)N1—N2—C16—C17177.46 (11)
S1—C2—C3—C4105.00 (15)O1—C16—C17—C18−162.44 (15)
C8—C3—C4—C5−0.1 (3)N2—C16—C17—C1814.3 (2)
C2—C3—C4—C5178.34 (16)O1—C16—C17—C2113.6 (2)
C3—C4—C5—C60.3 (3)N2—C16—C17—C21−169.68 (13)
C4—C5—C6—C7−0.3 (3)C21—C17—C18—C191.3 (2)
C5—C6—C7—C80.1 (3)C16—C17—C18—C19177.25 (13)
C4—C3—C8—C7−0.1 (2)C20—N3—C19—C18−0.4 (3)
C2—C3—C8—C7−178.54 (14)C17—C18—C19—N3−0.5 (2)
C6—C7—C8—C30.1 (3)C19—N3—C20—C210.4 (3)
C1—S2—C9—C10−86.57 (11)N3—C20—C21—C170.4 (3)
S2—C9—C10—C11104.40 (15)C18—C17—C21—C20−1.3 (2)
S2—C9—C10—C15−76.77 (16)C16—C17—C21—C20−177.54 (14)
C15—C10—C11—C121.0 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O1i0.864 (17)1.936 (17)2.7852 (15)167.4 (16)
C7—H7···N3ii0.952.543.339 (2)142
C8—H8···N3iii0.952.523.424 (2)158
C18—H18···O1i0.952.533.365 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O1i0.864 (17)1.936 (17)2.7852 (15)167.4 (16)
C7—H7⋯N3ii0.952.543.339 (2)142
C8—H8⋯N3iii0.952.523.424 (2)158
C18—H18⋯O1i0.952.533.365 (2)147

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[Bis(benzyl-sulfan-yl)methyl-idene]-4-meth-oxy-benzohydrazide.

Authors:  Jerry P Jasinski; Ray J Butcher; S K Kushawaha; M K Bharty; N K Singh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03
  2 in total
  4 in total

1.  Erratum: N'-[Bis(benzyl-sulfan-yl)methyl-idene]benzo-hydrazide. Corrigendum.

Authors:  Shahedeh Tayamon; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-10-28

2.  Crystal structure of N'-[bis-(ethyl-sulfan-yl)methyl-idene]-2-hy-droxy-4-meth-oxy-benzohydrazide.

Authors:  Paras Nath; Manoj K Bharty; Rahul Chaurasia; Sanyucta Kumari; Sushil K Gupta
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-21

3.  2-Cyclo-hexyl-idene-N-methyl-hydrazine-carbothio-amide.

Authors:  Shahedeh Tayamon; Nurul Ain Mazlan; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

4.  2,2-Dibenzyl-hydrazin-1-ium chloride.

Authors:  Shahedeh Tayamon; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-16
  4 in total

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