| Literature DB >> 23284431 |
Shahedeh Tayamon1, Nurul Ain Mazlan, Thahira Begum S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse.
Abstract
The title compound C(8)H(15)N(3)S has two mol-ecules in the asymmetric unit in which cis-trans isomerism is exhibited around the N(NH)C=S bonds. The cyclo-hexyl rings in both mol-ecules adopt a chair conformation. In the crystal, N-H⋯S hydrogen bonding produces dimers, which are inter-connected through further N-H⋯S hydrogen bonds, forming chains along the b-axis direction.Entities:
Year: 2012 PMID: 23284431 PMCID: PMC3515211 DOI: 10.1107/S1600536812042018
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H15N3S | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 6569 reflections |
| θ = 4–71° | |
| µ = 2.56 mm−1 | |
| β = 102.132 (3)° | Plate, yellow |
| 0.27 × 0.22 × 0.10 mm | |
| Agilent Gemini diffractometer | 3414 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 71.3°, θmin = 4.5° |
| Absorption correction: multi-scan ( | |
| 13859 measured reflections | |
| 3754 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| Method = Modified Sheldrick
| |
| (Δ/σ)max = 0.001 | |
| 3740 reflections | Δρmax = 0.42 e Å−3 |
| 217 parameters | Δρmin = −0.21 e Å−3 |
| 0 restraints |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow
nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.Cosier, J. & Glazer, A. |
| S201 | 0.58434 (4) | −0.01233 (3) | 0.30376 (2) | 0.0187 | |
| C202 | 0.60061 (14) | 0.13128 (13) | 0.27235 (8) | 0.0162 | |
| N203 | 0.53742 (13) | 0.22586 (11) | 0.29493 (7) | 0.0181 | |
| C204 | 0.44282 (16) | 0.21726 (14) | 0.34578 (9) | 0.0209 | |
| N205 | 0.67851 (13) | 0.15375 (11) | 0.22056 (7) | 0.0167 | |
| N206 | 0.70685 (13) | 0.27513 (11) | 0.20908 (7) | 0.0172 | |
| C207 | 0.76628 (14) | 0.30324 (13) | 0.15489 (8) | 0.0164 | |
| C208 | 0.80605 (16) | 0.22007 (13) | 0.09651 (8) | 0.0185 | |
| C209 | 0.76595 (17) | 0.27449 (14) | 0.01581 (9) | 0.0224 | |
| C210 | 0.81075 (18) | 0.40699 (15) | 0.01227 (9) | 0.0253 | |
| C211 | 0.75322 (17) | 0.48442 (14) | 0.06856 (9) | 0.0216 | |
| C212 | 0.80051 (16) | 0.43550 (13) | 0.14981 (9) | 0.0189 | |
| H2042 | 0.4105 | 0.2974 | 0.3532 | 0.0328* | |
| H2041 | 0.4865 | 0.1830 | 0.3941 | 0.0327* | |
| H2043 | 0.3665 | 0.1658 | 0.3226 | 0.0325* | |
| H2082 | 0.9047 | 0.2100 | 0.1102 | 0.0244* | |
| H2081 | 0.7642 | 0.1400 | 0.0982 | 0.0221* | |
| H2091 | 0.8084 | 0.2250 | −0.0181 | 0.0289* | |
| H2092 | 0.6676 | 0.2711 | −0.0007 | 0.0289* | |
| H2102 | 0.9105 | 0.4108 | 0.0260 | 0.0327* | |
| H2101 | 0.7794 | 0.4379 | −0.0396 | 0.0332* | |
| H2111 | 0.7819 | 0.5687 | 0.0665 | 0.0267* | |
| H2112 | 0.6522 | 0.4812 | 0.0542 | 0.0274* | |
| H2121 | 0.8989 | 0.4423 | 0.1649 | 0.0247* | |
| H2122 | 0.7612 | 0.4819 | 0.1862 | 0.0250* | |
| H2051 | 0.7311 | 0.0945 | 0.2094 | 0.0237* | |
| H2031 | 0.5539 | 0.2982 | 0.2789 | 0.0238* | |
| S101 | 0.10077 (4) | 0.43846 (3) | 0.32431 (2) | 0.0195 | |
| C102 | 0.09543 (14) | 0.30514 (14) | 0.27653 (8) | 0.0162 | |
| N103 | 0.03196 (13) | 0.20656 (11) | 0.29422 (7) | 0.0171 | |
| C104 | −0.04378 (16) | 0.20264 (14) | 0.35483 (9) | 0.0198 | |
| N105 | 0.15382 (12) | 0.29552 (11) | 0.21498 (7) | 0.0168 | |
| N106 | 0.16479 (13) | 0.17797 (11) | 0.18731 (7) | 0.0191 | |
| C107 | 0.20173 (15) | 0.16549 (14) | 0.12364 (9) | 0.0180 | |
| C108 | 0.23688 (15) | 0.26264 (14) | 0.07247 (8) | 0.0188 | |
| C109 | 0.38405 (16) | 0.24444 (14) | 0.06287 (9) | 0.0201 | |
| C110 | 0.40502 (17) | 0.11593 (14) | 0.03518 (9) | 0.0228 | |
| C111 | 0.36605 (16) | 0.01991 (14) | 0.08823 (9) | 0.0206 | |
| C112 | 0.21911 (17) | 0.03771 (15) | 0.09779 (10) | 0.0240 | |
| H1041 | −0.0770 | 0.1213 | 0.3570 | 0.0331* | |
| H1042 | 0.0137 | 0.2223 | 0.4028 | 0.0329* | |
| H1043 | −0.1208 | 0.2590 | 0.3436 | 0.0325* | |
| H1081 | 0.2226 | 0.3447 | 0.0915 | 0.0246* | |
| H1082 | 0.1745 | 0.2523 | 0.0229 | 0.0255* | |
| H1092 | 0.4454 | 0.2578 | 0.1125 | 0.0256* | |
| H1091 | 0.4047 | 0.3045 | 0.0275 | 0.0262* | |
| H1101 | 0.5017 | 0.1051 | 0.0335 | 0.0290* | |
| H1102 | 0.3480 | 0.1049 | −0.0165 | 0.0286* | |
| H1112 | 0.4287 | 0.0259 | 0.1391 | 0.0258* | |
| H1111 | 0.3763 | −0.0617 | 0.0669 | 0.0248* | |
| H1121 | 0.1964 | −0.0195 | 0.1338 | 0.0317* | |
| H1122 | 0.1553 | 0.0268 | 0.0483 | 0.0307* | |
| H1031 | 0.0352 | 0.1396 | 0.2682 | 0.0230* | |
| H1051 | 0.2103 | 0.3519 | 0.2083 | 0.0243* |
| S201 | 0.0218 (2) | 0.01267 (19) | 0.0224 (2) | −0.00031 (13) | 0.00684 (15) | 0.00329 (13) |
| C202 | 0.0161 (7) | 0.0153 (7) | 0.0155 (7) | −0.0016 (5) | −0.0003 (5) | 0.0006 (5) |
| N203 | 0.0214 (6) | 0.0127 (6) | 0.0214 (6) | 0.0004 (5) | 0.0069 (5) | 0.0022 (5) |
| C204 | 0.0213 (8) | 0.0199 (8) | 0.0225 (8) | 0.0000 (6) | 0.0072 (6) | −0.0010 (6) |
| N205 | 0.0202 (6) | 0.0112 (6) | 0.0194 (6) | 0.0009 (5) | 0.0060 (5) | 0.0014 (5) |
| N206 | 0.0187 (6) | 0.0120 (6) | 0.0200 (6) | 0.0007 (5) | 0.0020 (5) | 0.0015 (5) |
| C207 | 0.0161 (7) | 0.0150 (7) | 0.0168 (7) | 0.0006 (5) | 0.0008 (5) | 0.0020 (5) |
| C208 | 0.0216 (7) | 0.0138 (7) | 0.0209 (8) | 0.0012 (6) | 0.0060 (6) | 0.0015 (6) |
| C209 | 0.0308 (8) | 0.0195 (8) | 0.0174 (7) | −0.0022 (6) | 0.0059 (6) | −0.0001 (6) |
| C210 | 0.0362 (9) | 0.0208 (8) | 0.0199 (8) | −0.0026 (7) | 0.0084 (7) | 0.0046 (6) |
| C211 | 0.0257 (8) | 0.0155 (7) | 0.0234 (8) | −0.0004 (6) | 0.0047 (6) | 0.0043 (6) |
| C212 | 0.0218 (7) | 0.0143 (7) | 0.0205 (8) | −0.0010 (6) | 0.0045 (6) | 0.0004 (6) |
| S101 | 0.0230 (2) | 0.0150 (2) | 0.0221 (2) | −0.00106 (13) | 0.00819 (15) | −0.00470 (13) |
| C102 | 0.0149 (7) | 0.0158 (7) | 0.0173 (7) | 0.0027 (5) | 0.0020 (5) | 0.0003 (5) |
| N103 | 0.0195 (6) | 0.0141 (6) | 0.0189 (6) | −0.0002 (5) | 0.0069 (5) | −0.0014 (5) |
| C104 | 0.0210 (7) | 0.0208 (8) | 0.0191 (7) | −0.0006 (6) | 0.0072 (6) | 0.0013 (6) |
| N105 | 0.0189 (6) | 0.0120 (6) | 0.0209 (6) | −0.0016 (5) | 0.0070 (5) | −0.0016 (5) |
| N106 | 0.0196 (6) | 0.0132 (6) | 0.0264 (7) | −0.0010 (5) | 0.0091 (5) | −0.0030 (5) |
| C107 | 0.0149 (7) | 0.0176 (8) | 0.0223 (7) | −0.0020 (6) | 0.0055 (6) | −0.0031 (6) |
| C108 | 0.0222 (8) | 0.0175 (7) | 0.0162 (7) | 0.0024 (6) | 0.0032 (6) | −0.0008 (6) |
| C109 | 0.0232 (8) | 0.0181 (8) | 0.0211 (7) | −0.0016 (6) | 0.0096 (6) | 0.0007 (6) |
| C110 | 0.0249 (8) | 0.0210 (8) | 0.0255 (8) | −0.0007 (6) | 0.0123 (6) | −0.0037 (6) |
| C111 | 0.0240 (8) | 0.0150 (8) | 0.0249 (8) | 0.0004 (6) | 0.0094 (6) | −0.0044 (6) |
| C112 | 0.0269 (8) | 0.0176 (8) | 0.0314 (9) | −0.0059 (6) | 0.0152 (7) | −0.0069 (6) |
| S201—C202 | 1.6982 (15) | S101—C102 | 1.6953 (15) |
| C202—N203 | 1.3269 (19) | C102—N103 | 1.331 (2) |
| C202—N205 | 1.3582 (19) | C102—N105 | 1.3596 (19) |
| N203—C204 | 1.4531 (19) | N103—C104 | 1.4537 (18) |
| N203—H2031 | 0.874 | N103—H1031 | 0.877 |
| C204—H2042 | 0.959 | C104—H1041 | 0.959 |
| C204—H2041 | 0.962 | C104—H1042 | 0.955 |
| C204—H2043 | 0.974 | C104—H1043 | 0.980 |
| N205—N206 | 1.3909 (17) | N105—N106 | 1.3989 (17) |
| N205—H2051 | 0.889 | N105—H1051 | 0.866 |
| N206—C207 | 1.2818 (19) | N106—C107 | 1.281 (2) |
| C207—C208 | 1.508 (2) | C107—C108 | 1.500 (2) |
| C207—C212 | 1.504 (2) | C107—C112 | 1.503 (2) |
| C208—C209 | 1.541 (2) | C108—C109 | 1.538 (2) |
| C208—H2082 | 0.977 | C108—H1081 | 0.987 |
| C208—H2081 | 0.980 | C108—H1082 | 0.982 |
| C209—C210 | 1.532 (2) | C109—C110 | 1.529 (2) |
| C209—H2091 | 0.979 | C109—H1092 | 0.982 |
| C209—H2092 | 0.971 | C109—H1091 | 0.969 |
| C210—C211 | 1.526 (2) | C110—C111 | 1.528 (2) |
| C210—H2102 | 0.982 | C110—H1101 | 0.986 |
| C210—H2101 | 0.980 | C110—H1102 | 0.990 |
| C211—C212 | 1.534 (2) | C111—C112 | 1.535 (2) |
| C211—H2111 | 0.975 | C111—H1112 | 0.997 |
| C211—H2112 | 0.995 | C111—H1111 | 0.990 |
| C212—H2121 | 0.972 | C112—H1121 | 0.964 |
| C212—H2122 | 0.975 | C112—H1122 | 0.987 |
| S201—C202—N203 | 122.94 (11) | S101—C102—N103 | 123.45 (11) |
| S201—C202—N205 | 120.43 (11) | S101—C102—N105 | 120.35 (11) |
| N203—C202—N205 | 116.62 (13) | N103—C102—N105 | 116.16 (13) |
| C202—N203—C204 | 124.01 (13) | C102—N103—C104 | 123.75 (13) |
| C202—N203—H2031 | 118.6 | C102—N103—H1031 | 119.0 |
| C204—N203—H2031 | 117.4 | C104—N103—H1031 | 117.2 |
| N203—C204—H2042 | 108.2 | N103—C104—H1041 | 107.4 |
| N203—C204—H2041 | 110.8 | N103—C104—H1042 | 110.7 |
| H2042—C204—H2041 | 109.9 | H1041—C104—H1042 | 109.0 |
| N203—C204—H2043 | 109.3 | N103—C104—H1043 | 110.0 |
| H2042—C204—H2043 | 109.5 | H1041—C104—H1043 | 109.4 |
| H2041—C204—H2043 | 109.1 | H1042—C104—H1043 | 110.2 |
| C202—N205—N206 | 116.23 (12) | C102—N105—N106 | 116.12 (12) |
| C202—N205—H2051 | 118.5 | C102—N105—H1051 | 117.6 |
| N206—N205—H2051 | 121.5 | N106—N105—H1051 | 120.8 |
| N205—N206—C207 | 119.15 (12) | N105—N106—C107 | 118.37 (13) |
| N206—C207—C208 | 127.94 (13) | N106—C107—C108 | 128.28 (14) |
| N206—C207—C212 | 115.41 (13) | N106—C107—C112 | 116.74 (14) |
| C208—C207—C212 | 116.66 (13) | C108—C107—C112 | 114.90 (13) |
| C207—C208—C209 | 111.22 (12) | C107—C108—C109 | 109.37 (12) |
| C207—C208—H2082 | 107.3 | C107—C108—H1081 | 111.7 |
| C209—C208—H2082 | 109.4 | C109—C108—H1081 | 111.8 |
| C207—C208—H2081 | 110.2 | C107—C108—H1082 | 106.5 |
| C209—C208—H2081 | 110.5 | C109—C108—H1082 | 109.2 |
| H2082—C208—H2081 | 108.1 | H1081—C108—H1082 | 108.0 |
| C208—C209—C210 | 112.84 (13) | C108—C109—C110 | 111.01 (13) |
| C208—C209—H2091 | 107.8 | C108—C109—H1092 | 108.3 |
| C210—C209—H2091 | 109.5 | C110—C109—H1092 | 109.3 |
| C208—C209—H2092 | 108.6 | C108—C109—H1091 | 109.1 |
| C210—C209—H2092 | 108.3 | C110—C109—H1091 | 110.9 |
| H2091—C209—H2092 | 109.8 | H1092—C109—H1091 | 108.2 |
| C209—C210—C211 | 110.43 (13) | C109—C110—C111 | 111.52 (12) |
| C209—C210—H2102 | 108.9 | C109—C110—H1101 | 109.0 |
| C211—C210—H2102 | 108.7 | C111—C110—H1101 | 108.6 |
| C209—C210—H2101 | 109.3 | C109—C110—H1102 | 109.0 |
| C211—C210—H2101 | 110.2 | C111—C110—H1102 | 109.0 |
| H2102—C210—H2101 | 109.3 | H1101—C110—H1102 | 109.7 |
| C210—C211—C212 | 110.40 (13) | C110—C111—C112 | 111.11 (13) |
| C210—C211—H2111 | 110.5 | C110—C111—H1112 | 109.2 |
| C212—C211—H2111 | 109.6 | C112—C111—H1112 | 109.1 |
| C210—C211—H2112 | 108.5 | C110—C111—H1111 | 109.0 |
| C212—C211—H2112 | 109.2 | C112—C111—H1111 | 109.9 |
| H2111—C211—H2112 | 108.5 | H1112—C111—H1111 | 108.5 |
| C211—C212—C207 | 111.64 (12) | C111—C112—C107 | 109.33 (13) |
| C211—C212—H2121 | 109.4 | C111—C112—H1121 | 111.2 |
| C207—C212—H2121 | 106.9 | C107—C112—H1121 | 110.2 |
| C211—C212—H2122 | 111.4 | C111—C112—H1122 | 110.0 |
| C207—C212—H2122 | 109.6 | C107—C112—H1122 | 107.2 |
| H2121—C212—H2122 | 107.7 | H1121—C112—H1122 | 108.8 |
| H··· | ||||
| N205—H2051···S101i | 0.89 | 2.57 | 3.4559 (13) | 175 |
| N105—H1051···S201ii | 0.87 | 2.59 | 3.4484 (13) | 169 |
| N203—H2031···S201ii | 0.87 | 2.76 | 3.4691 (13) | 139 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N205—H2051⋯S101i | 0.89 | 2.57 | 3.4559 (13) | 175 |
| N105—H1051⋯S201ii | 0.87 | 2.59 | 3.4484 (13) | 169 |
| N203—H2031⋯S201ii | 0.87 | 2.76 | 3.4691 (13) | 139 |
Symmetry codes: (i) ; (ii) .