Literature DB >> 23284431

2-Cyclo-hexyl-idene-N-methyl-hydrazine-carbothio-amide.

Shahedeh Tayamon1, Nurul Ain Mazlan, Thahira Begum S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse.   

Abstract

The title compound C(8)H(15)N(3)S has two mol-ecules in the asymmetric unit in which cis-trans isomerism is exhibited around the N(NH)C=S bonds. The cyclo-hexyl rings in both mol-ecules adopt a chair conformation. In the crystal, N-H⋯S hydrogen bonding produces dimers, which are inter-connected through further N-H⋯S hydrogen bonds, forming chains along the b-axis direction.

Entities:  

Year:  2012        PMID: 23284431      PMCID: PMC3515211          DOI: 10.1107/S1600536812042018

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the coordination chemistry of dithio­carbazate derivatives, see: Zhang et al. (2011 ▶); Khoo et al. (2005 ▶); Ravoof et al. (2010 ▶). For the synthesis and methodology, see: Tian et al. (1997); Tarafder et al. (2000 ▶); Tan et al. (2012 ▶). For related structures, see: Paulus et al. (2011 ▶); Tayamon et al. (2012 ▶). For packing arrangements in other cyclohexyl compounds, see: Rohr et al. (2009 ▶). For riding constrints, see: Cooper et al. (2010 ▶). For charge delocalization, see: Sanderson (1967 ▶). For the synthesis, see: Tian et al. (1997 ▶).

Experimental

Crystal data

C8H15N3S M = 185.29 Monoclinic, a = 10.0538 (3) Å b = 11.0108 (3) Å c = 17.9484 (5) Å β = 102.132 (3)° V = 1942.52 (10) Å3 Z = 8 Cu Kα radiation μ = 2.56 mm−1 T = 100 K 0.27 × 0.22 × 0.10 mm

Data collection

Agilent Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.58, T max = 0.77 13859 measured reflections 3754 independent reflections 3414 reflections with I > 2.0σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.090 S = 0.98 3740 reflections 217 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042018/bg2476sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042018/bg2476Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H15N3SF(000) = 800
Mr = 185.29Dx = 1.267 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 6569 reflections
a = 10.0538 (3) Åθ = 4–71°
b = 11.0108 (3) ŵ = 2.56 mm1
c = 17.9484 (5) ÅT = 100 K
β = 102.132 (3)°Plate, yellow
V = 1942.52 (10) Å30.27 × 0.22 × 0.10 mm
Z = 8
Agilent Gemini diffractometer3414 reflections with I > 2.0σ(I)
Graphite monochromatorRint = 0.025
ω scansθmax = 71.3°, θmin = 4.5°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −12→12
Tmin = 0.58, Tmax = 0.77k = −12→13
13859 measured reflectionsl = −22→20
3754 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.090 Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.05P)2 + 1.01P] , where P = (max(Fo2,0) + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.001
3740 reflectionsΔρmax = 0.42 e Å3
217 parametersΔρmin = −0.21 e Å3
0 restraints
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105–107.
xyzUiso*/Ueq
S2010.58434 (4)−0.01233 (3)0.30376 (2)0.0187
C2020.60061 (14)0.13128 (13)0.27235 (8)0.0162
N2030.53742 (13)0.22586 (11)0.29493 (7)0.0181
C2040.44282 (16)0.21726 (14)0.34578 (9)0.0209
N2050.67851 (13)0.15375 (11)0.22056 (7)0.0167
N2060.70685 (13)0.27513 (11)0.20908 (7)0.0172
C2070.76628 (14)0.30324 (13)0.15489 (8)0.0164
C2080.80605 (16)0.22007 (13)0.09651 (8)0.0185
C2090.76595 (17)0.27449 (14)0.01581 (9)0.0224
C2100.81075 (18)0.40699 (15)0.01227 (9)0.0253
C2110.75322 (17)0.48442 (14)0.06856 (9)0.0216
C2120.80051 (16)0.43550 (13)0.14981 (9)0.0189
H20420.41050.29740.35320.0328*
H20410.48650.18300.39410.0327*
H20430.36650.16580.32260.0325*
H20820.90470.21000.11020.0244*
H20810.76420.14000.09820.0221*
H20910.80840.2250−0.01810.0289*
H20920.66760.2711−0.00070.0289*
H21020.91050.41080.02600.0327*
H21010.77940.4379−0.03960.0332*
H21110.78190.56870.06650.0267*
H21120.65220.48120.05420.0274*
H21210.89890.44230.16490.0247*
H21220.76120.48190.18620.0250*
H20510.73110.09450.20940.0237*
H20310.55390.29820.27890.0238*
S1010.10077 (4)0.43846 (3)0.32431 (2)0.0195
C1020.09543 (14)0.30514 (14)0.27653 (8)0.0162
N1030.03196 (13)0.20656 (11)0.29422 (7)0.0171
C104−0.04378 (16)0.20264 (14)0.35483 (9)0.0198
N1050.15382 (12)0.29552 (11)0.21498 (7)0.0168
N1060.16479 (13)0.17797 (11)0.18731 (7)0.0191
C1070.20173 (15)0.16549 (14)0.12364 (9)0.0180
C1080.23688 (15)0.26264 (14)0.07247 (8)0.0188
C1090.38405 (16)0.24444 (14)0.06287 (9)0.0201
C1100.40502 (17)0.11593 (14)0.03518 (9)0.0228
C1110.36605 (16)0.01991 (14)0.08823 (9)0.0206
C1120.21911 (17)0.03771 (15)0.09779 (10)0.0240
H1041−0.07700.12130.35700.0331*
H10420.01370.22230.40280.0329*
H1043−0.12080.25900.34360.0325*
H10810.22260.34470.09150.0246*
H10820.17450.25230.02290.0255*
H10920.44540.25780.11250.0256*
H10910.40470.30450.02750.0262*
H11010.50170.10510.03350.0290*
H11020.34800.1049−0.01650.0286*
H11120.42870.02590.13910.0258*
H11110.3763−0.06170.06690.0248*
H11210.1964−0.01950.13380.0317*
H11220.15530.02680.04830.0307*
H10310.03520.13960.26820.0230*
H10510.21030.35190.20830.0243*
U11U22U33U12U13U23
S2010.0218 (2)0.01267 (19)0.0224 (2)−0.00031 (13)0.00684 (15)0.00329 (13)
C2020.0161 (7)0.0153 (7)0.0155 (7)−0.0016 (5)−0.0003 (5)0.0006 (5)
N2030.0214 (6)0.0127 (6)0.0214 (6)0.0004 (5)0.0069 (5)0.0022 (5)
C2040.0213 (8)0.0199 (8)0.0225 (8)0.0000 (6)0.0072 (6)−0.0010 (6)
N2050.0202 (6)0.0112 (6)0.0194 (6)0.0009 (5)0.0060 (5)0.0014 (5)
N2060.0187 (6)0.0120 (6)0.0200 (6)0.0007 (5)0.0020 (5)0.0015 (5)
C2070.0161 (7)0.0150 (7)0.0168 (7)0.0006 (5)0.0008 (5)0.0020 (5)
C2080.0216 (7)0.0138 (7)0.0209 (8)0.0012 (6)0.0060 (6)0.0015 (6)
C2090.0308 (8)0.0195 (8)0.0174 (7)−0.0022 (6)0.0059 (6)−0.0001 (6)
C2100.0362 (9)0.0208 (8)0.0199 (8)−0.0026 (7)0.0084 (7)0.0046 (6)
C2110.0257 (8)0.0155 (7)0.0234 (8)−0.0004 (6)0.0047 (6)0.0043 (6)
C2120.0218 (7)0.0143 (7)0.0205 (8)−0.0010 (6)0.0045 (6)0.0004 (6)
S1010.0230 (2)0.0150 (2)0.0221 (2)−0.00106 (13)0.00819 (15)−0.00470 (13)
C1020.0149 (7)0.0158 (7)0.0173 (7)0.0027 (5)0.0020 (5)0.0003 (5)
N1030.0195 (6)0.0141 (6)0.0189 (6)−0.0002 (5)0.0069 (5)−0.0014 (5)
C1040.0210 (7)0.0208 (8)0.0191 (7)−0.0006 (6)0.0072 (6)0.0013 (6)
N1050.0189 (6)0.0120 (6)0.0209 (6)−0.0016 (5)0.0070 (5)−0.0016 (5)
N1060.0196 (6)0.0132 (6)0.0264 (7)−0.0010 (5)0.0091 (5)−0.0030 (5)
C1070.0149 (7)0.0176 (8)0.0223 (7)−0.0020 (6)0.0055 (6)−0.0031 (6)
C1080.0222 (8)0.0175 (7)0.0162 (7)0.0024 (6)0.0032 (6)−0.0008 (6)
C1090.0232 (8)0.0181 (8)0.0211 (7)−0.0016 (6)0.0096 (6)0.0007 (6)
C1100.0249 (8)0.0210 (8)0.0255 (8)−0.0007 (6)0.0123 (6)−0.0037 (6)
C1110.0240 (8)0.0150 (8)0.0249 (8)0.0004 (6)0.0094 (6)−0.0044 (6)
C1120.0269 (8)0.0176 (8)0.0314 (9)−0.0059 (6)0.0152 (7)−0.0069 (6)
S201—C2021.6982 (15)S101—C1021.6953 (15)
C202—N2031.3269 (19)C102—N1031.331 (2)
C202—N2051.3582 (19)C102—N1051.3596 (19)
N203—C2041.4531 (19)N103—C1041.4537 (18)
N203—H20310.874N103—H10310.877
C204—H20420.959C104—H10410.959
C204—H20410.962C104—H10420.955
C204—H20430.974C104—H10430.980
N205—N2061.3909 (17)N105—N1061.3989 (17)
N205—H20510.889N105—H10510.866
N206—C2071.2818 (19)N106—C1071.281 (2)
C207—C2081.508 (2)C107—C1081.500 (2)
C207—C2121.504 (2)C107—C1121.503 (2)
C208—C2091.541 (2)C108—C1091.538 (2)
C208—H20820.977C108—H10810.987
C208—H20810.980C108—H10820.982
C209—C2101.532 (2)C109—C1101.529 (2)
C209—H20910.979C109—H10920.982
C209—H20920.971C109—H10910.969
C210—C2111.526 (2)C110—C1111.528 (2)
C210—H21020.982C110—H11010.986
C210—H21010.980C110—H11020.990
C211—C2121.534 (2)C111—C1121.535 (2)
C211—H21110.975C111—H11120.997
C211—H21120.995C111—H11110.990
C212—H21210.972C112—H11210.964
C212—H21220.975C112—H11220.987
S201—C202—N203122.94 (11)S101—C102—N103123.45 (11)
S201—C202—N205120.43 (11)S101—C102—N105120.35 (11)
N203—C202—N205116.62 (13)N103—C102—N105116.16 (13)
C202—N203—C204124.01 (13)C102—N103—C104123.75 (13)
C202—N203—H2031118.6C102—N103—H1031119.0
C204—N203—H2031117.4C104—N103—H1031117.2
N203—C204—H2042108.2N103—C104—H1041107.4
N203—C204—H2041110.8N103—C104—H1042110.7
H2042—C204—H2041109.9H1041—C104—H1042109.0
N203—C204—H2043109.3N103—C104—H1043110.0
H2042—C204—H2043109.5H1041—C104—H1043109.4
H2041—C204—H2043109.1H1042—C104—H1043110.2
C202—N205—N206116.23 (12)C102—N105—N106116.12 (12)
C202—N205—H2051118.5C102—N105—H1051117.6
N206—N205—H2051121.5N106—N105—H1051120.8
N205—N206—C207119.15 (12)N105—N106—C107118.37 (13)
N206—C207—C208127.94 (13)N106—C107—C108128.28 (14)
N206—C207—C212115.41 (13)N106—C107—C112116.74 (14)
C208—C207—C212116.66 (13)C108—C107—C112114.90 (13)
C207—C208—C209111.22 (12)C107—C108—C109109.37 (12)
C207—C208—H2082107.3C107—C108—H1081111.7
C209—C208—H2082109.4C109—C108—H1081111.8
C207—C208—H2081110.2C107—C108—H1082106.5
C209—C208—H2081110.5C109—C108—H1082109.2
H2082—C208—H2081108.1H1081—C108—H1082108.0
C208—C209—C210112.84 (13)C108—C109—C110111.01 (13)
C208—C209—H2091107.8C108—C109—H1092108.3
C210—C209—H2091109.5C110—C109—H1092109.3
C208—C209—H2092108.6C108—C109—H1091109.1
C210—C209—H2092108.3C110—C109—H1091110.9
H2091—C209—H2092109.8H1092—C109—H1091108.2
C209—C210—C211110.43 (13)C109—C110—C111111.52 (12)
C209—C210—H2102108.9C109—C110—H1101109.0
C211—C210—H2102108.7C111—C110—H1101108.6
C209—C210—H2101109.3C109—C110—H1102109.0
C211—C210—H2101110.2C111—C110—H1102109.0
H2102—C210—H2101109.3H1101—C110—H1102109.7
C210—C211—C212110.40 (13)C110—C111—C112111.11 (13)
C210—C211—H2111110.5C110—C111—H1112109.2
C212—C211—H2111109.6C112—C111—H1112109.1
C210—C211—H2112108.5C110—C111—H1111109.0
C212—C211—H2112109.2C112—C111—H1111109.9
H2111—C211—H2112108.5H1112—C111—H1111108.5
C211—C212—C207111.64 (12)C111—C112—C107109.33 (13)
C211—C212—H2121109.4C111—C112—H1121111.2
C207—C212—H2121106.9C107—C112—H1121110.2
C211—C212—H2122111.4C111—C112—H1122110.0
C207—C212—H2122109.6C107—C112—H1122107.2
H2121—C212—H2122107.7H1121—C112—H1122108.8
D—H···AD—HH···AD···AD—H···A
N205—H2051···S101i0.892.573.4559 (13)175
N105—H1051···S201ii0.872.593.4484 (13)169
N203—H2031···S201ii0.872.763.4691 (13)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N205—H2051⋯S101i 0.892.573.4559 (13)175
N105—H1051⋯S201ii 0.872.593.4484 (13)169
N203—H2031⋯S201ii 0.872.763.4691 (13)139

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

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