| Literature DB >> 26870554 |
Paras Nath1, Manoj K Bharty1, Rahul Chaurasia1, Sanyucta Kumari1, Sushil K Gupta2.
Abstract
In the title compound, C13H18N2O3S2, theEntities:
Keywords: crystal structure; dithiocarbazate; ester; hydrogen bonding
Year: 2015 PMID: 26870554 PMCID: PMC4719926 DOI: 10.1107/S2056989015021271
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C13H18N2O3S2 | |
| Monoclinic, | Mo |
| Cell parameters from 4529 reflections | |
| θ = 3.0–27.5° | |
| µ = 0.37 mm−1 | |
| β = 104.156 (10)° | |
| Prism, colorless | |
| 0.2 × 0.2 × 0.2 mm |
| Rigaku Mercury 375R diffractometer | 2685 independent reflections |
| Radiation source: Sealed Tube | 2530 reflections with |
| Detector resolution: 13.6612 pixels mm-1 | |
| ω scans | θmax = 25.3°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 12952 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2685 reflections | (Δ/σ)max < 0.001 |
| 192 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Experimental. IR (selected, KBr): 3320 [ν(O–H)], 3276 [ν(N–H)], 1634 [ν(C═ O)], 1094 [ν(N–N)], 876 [ν(C═S)] cm-1. 1H NMR (DMSO-d6); δ [p.p.m.] = 12.26 (s, 1H, OH), 9.77 (s, 1H, NH), 7.80–6.40 (m, 3H, C6H3, phenyl), 3.82 (s, 3H, –OCH3), 3.06 (q, 4H, CH2), 1.44 (t, 6H, CH3). 13C NMR (DMSO-d6) δ [p.p.m.] = 168.3 (C4), 163.3 (C8), 162.0 (C2), 157.9 (C9), 132.1 (C6), 128.2 (C5), 106.8 (C3), 55.2 (C7), 27.1 (C10, C12), 14.4 (C11, C13). |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement on |
| S1 | 0.18898 (4) | 0.33147 (3) | 0.40368 (3) | 0.01707 (12) | |
| S2 | 0.36737 (4) | 0.51413 (3) | 0.34551 (3) | 0.01997 (12) | |
| O1 | 1.14563 (12) | 0.43927 (8) | 0.07886 (8) | 0.0191 (2) | |
| O2 | 0.73950 (13) | 0.50561 (8) | 0.24846 (8) | 0.0175 (2) | |
| H2A | 0.775 (2) | 0.5643 (17) | 0.2477 (15) | 0.034 (5)* | |
| O3 | 0.63540 (13) | 0.19012 (8) | 0.25602 (8) | 0.0211 (2) | |
| N1 | 0.55185 (14) | 0.35185 (9) | 0.27860 (9) | 0.0141 (2) | |
| H1A | 0.571 (2) | 0.4154 (15) | 0.2769 (13) | 0.025 (5)* | |
| N2 | 0.43294 (14) | 0.31214 (9) | 0.32068 (9) | 0.0154 (3) | |
| C1 | 0.78058 (16) | 0.32991 (10) | 0.20495 (10) | 0.0127 (3) | |
| C2 | 0.82146 (17) | 0.43652 (10) | 0.20485 (10) | 0.0136 (3) | |
| C3 | 0.94371 (17) | 0.46929 (11) | 0.16183 (10) | 0.0147 (3) | |
| H3A | 0.9696 | 0.5394 | 0.1619 | 0.018* | |
| C4 | 1.02795 (16) | 0.39806 (11) | 0.11852 (10) | 0.0150 (3) | |
| C5 | 0.98999 (17) | 0.29255 (11) | 0.11710 (10) | 0.0157 (3) | |
| H5A | 1.0459 | 0.2447 | 0.0877 | 0.019* | |
| C6 | 0.86766 (17) | 0.26095 (11) | 0.16032 (10) | 0.0147 (3) | |
| H6A | 0.8423 | 0.1907 | 0.1596 | 0.018* | |
| C7 | 1.23586 (18) | 0.36914 (12) | 0.03325 (12) | 0.0214 (3) | |
| H7A | 1.3118 | 0.4074 | 0.0059 | 0.032* | |
| H7B | 1.1626 | 0.3318 | −0.0190 | 0.032* | |
| H7C | 1.2938 | 0.3211 | 0.0822 | 0.032* | |
| C8 | 0.65227 (16) | 0.28531 (11) | 0.24849 (10) | 0.0139 (3) | |
| C9 | 0.34330 (17) | 0.37829 (11) | 0.35163 (10) | 0.0145 (3) | |
| C10 | 0.19836 (17) | 0.19372 (11) | 0.37997 (11) | 0.0173 (3) | |
| H10A | 0.1809 | 0.1812 | 0.3090 | 0.021* | |
| H10B | 0.3044 | 0.1666 | 0.4134 | 0.021* | |
| C11 | 0.06688 (18) | 0.14095 (12) | 0.41920 (11) | 0.0220 (3) | |
| H11A | 0.0628 | 0.0687 | 0.4021 | 0.033* | |
| H11B | −0.0363 | 0.1725 | 0.3900 | 0.033* | |
| H11C | 0.0909 | 0.1483 | 0.4903 | 0.033* | |
| C12 | 0.19060 (17) | 0.56936 (11) | 0.37838 (11) | 0.0186 (3) | |
| H12A | 0.1653 | 0.6353 | 0.3444 | 0.022* | |
| H12B | 0.0985 | 0.5237 | 0.3543 | 0.022* | |
| C13 | 0.2116 (2) | 0.58643 (13) | 0.48938 (12) | 0.0253 (3) | |
| H13A | 0.1168 | 0.6202 | 0.5006 | 0.038* | |
| H13B | 0.3054 | 0.6291 | 0.5146 | 0.038* | |
| H13C | 0.2260 | 0.5208 | 0.5231 | 0.038* |
| S1 | 0.0167 (2) | 0.01427 (19) | 0.0235 (2) | 0.00006 (13) | 0.01113 (15) | 0.00050 (13) |
| S2 | 0.0224 (2) | 0.01129 (19) | 0.0307 (2) | 0.00183 (14) | 0.01520 (16) | 0.00151 (14) |
| O1 | 0.0207 (5) | 0.0153 (5) | 0.0264 (6) | −0.0009 (4) | 0.0156 (4) | −0.0009 (4) |
| O2 | 0.0195 (5) | 0.0094 (5) | 0.0276 (6) | −0.0009 (4) | 0.0135 (4) | −0.0018 (4) |
| O3 | 0.0208 (5) | 0.0106 (5) | 0.0367 (6) | −0.0004 (4) | 0.0161 (5) | 0.0010 (4) |
| N1 | 0.0136 (6) | 0.0098 (6) | 0.0214 (6) | −0.0017 (5) | 0.0091 (5) | 0.0004 (5) |
| N2 | 0.0143 (6) | 0.0147 (6) | 0.0195 (6) | −0.0011 (5) | 0.0085 (5) | 0.0010 (5) |
| C1 | 0.0111 (6) | 0.0128 (7) | 0.0140 (6) | 0.0004 (5) | 0.0027 (5) | 0.0004 (5) |
| C2 | 0.0143 (6) | 0.0125 (7) | 0.0135 (6) | 0.0020 (5) | 0.0026 (5) | −0.0002 (5) |
| C3 | 0.0171 (7) | 0.0112 (6) | 0.0160 (7) | −0.0008 (5) | 0.0043 (5) | 0.0001 (5) |
| C4 | 0.0140 (7) | 0.0180 (7) | 0.0137 (6) | −0.0007 (6) | 0.0048 (5) | 0.0023 (5) |
| C5 | 0.0163 (7) | 0.0148 (7) | 0.0174 (7) | 0.0018 (5) | 0.0069 (6) | −0.0019 (5) |
| C6 | 0.0167 (7) | 0.0102 (6) | 0.0173 (7) | 0.0000 (5) | 0.0044 (5) | −0.0005 (5) |
| C7 | 0.0212 (8) | 0.0198 (7) | 0.0284 (8) | 0.0029 (6) | 0.0162 (6) | −0.0001 (6) |
| C8 | 0.0125 (7) | 0.0134 (7) | 0.0154 (6) | −0.0001 (5) | 0.0024 (5) | −0.0001 (5) |
| C9 | 0.0148 (7) | 0.0124 (7) | 0.0164 (6) | −0.0002 (5) | 0.0043 (5) | 0.0018 (5) |
| C10 | 0.0175 (7) | 0.0136 (7) | 0.0221 (7) | −0.0015 (6) | 0.0073 (6) | −0.0003 (6) |
| C11 | 0.0207 (8) | 0.0219 (8) | 0.0242 (8) | −0.0059 (6) | 0.0071 (6) | 0.0020 (6) |
| C12 | 0.0170 (7) | 0.0144 (7) | 0.0242 (7) | 0.0042 (6) | 0.0048 (6) | −0.0018 (6) |
| C13 | 0.0302 (9) | 0.0225 (8) | 0.0259 (8) | −0.0003 (7) | 0.0121 (7) | −0.0043 (6) |
| S1—C9 | 1.7485 (14) | C4—C5 | 1.397 (2) |
| S1—C10 | 1.8115 (15) | C5—C6 | 1.380 (2) |
| S2—C9 | 1.7678 (15) | C5—H5A | 0.9300 |
| S2—C12 | 1.8151 (15) | C6—H6A | 0.9300 |
| O1—C4 | 1.3591 (17) | C7—H7A | 0.9600 |
| O1—C7 | 1.4276 (17) | C7—H7B | 0.9600 |
| O2—C2 | 1.3588 (17) | C7—H7C | 0.9600 |
| O2—H2A | 0.82 (2) | C10—C11 | 1.516 (2) |
| O3—C8 | 1.2430 (17) | C10—H10A | 0.9700 |
| N1—C8 | 1.3448 (18) | C10—H10B | 0.9700 |
| N1—N2 | 1.3804 (16) | C11—H11A | 0.9600 |
| N1—H1A | 0.836 (19) | C11—H11B | 0.9600 |
| N2—C9 | 1.2837 (18) | C11—H11C | 0.9600 |
| C1—C6 | 1.3932 (19) | C12—C13 | 1.519 (2) |
| C1—C2 | 1.4176 (19) | C12—H12A | 0.9700 |
| C1—C8 | 1.4827 (19) | C12—H12B | 0.9700 |
| C2—C3 | 1.382 (2) | C13—H13A | 0.9600 |
| C3—C4 | 1.387 (2) | C13—H13B | 0.9600 |
| C3—H3A | 0.9300 | C13—H13C | 0.9600 |
| C9—S1—C10 | 101.15 (7) | H7B—C7—H7C | 109.5 |
| C9—S2—C12 | 105.35 (7) | O3—C8—N1 | 120.63 (13) |
| C4—O1—C7 | 117.17 (11) | O3—C8—C1 | 121.87 (12) |
| C2—O2—H2A | 111.7 (14) | N1—C8—C1 | 117.49 (12) |
| C8—N1—N2 | 118.51 (12) | N2—C9—S1 | 118.17 (11) |
| C8—N1—H1A | 118.4 (13) | N2—C9—S2 | 123.89 (11) |
| N2—N1—H1A | 122.7 (13) | S1—C9—S2 | 117.94 (8) |
| C9—N2—N1 | 116.59 (12) | C11—C10—S1 | 107.85 (10) |
| C6—C1—C2 | 117.53 (12) | C11—C10—H10A | 110.1 |
| C6—C1—C8 | 116.99 (12) | S1—C10—H10A | 110.1 |
| C2—C1—C8 | 125.48 (12) | C11—C10—H10B | 110.1 |
| O2—C2—C3 | 120.66 (12) | S1—C10—H10B | 110.1 |
| O2—C2—C1 | 118.91 (12) | H10A—C10—H10B | 108.4 |
| C3—C2—C1 | 120.42 (13) | C10—C11—H11A | 109.5 |
| C2—C3—C4 | 120.25 (13) | C10—C11—H11B | 109.5 |
| C2—C3—H3A | 119.9 | H11A—C11—H11B | 109.5 |
| C4—C3—H3A | 119.9 | C10—C11—H11C | 109.5 |
| O1—C4—C3 | 114.98 (12) | H11A—C11—H11C | 109.5 |
| O1—C4—C5 | 124.37 (13) | H11B—C11—H11C | 109.5 |
| C3—C4—C5 | 120.65 (13) | C13—C12—S2 | 114.24 (11) |
| C6—C5—C4 | 118.46 (13) | C13—C12—H12A | 108.7 |
| C6—C5—H5A | 120.8 | S2—C12—H12A | 108.7 |
| C4—C5—H5A | 120.8 | C13—C12—H12B | 108.7 |
| C5—C6—C1 | 122.69 (13) | S2—C12—H12B | 108.7 |
| C5—C6—H6A | 118.7 | H12A—C12—H12B | 107.6 |
| C1—C6—H6A | 118.7 | C12—C13—H13A | 109.5 |
| O1—C7—H7A | 109.5 | C12—C13—H13B | 109.5 |
| O1—C7—H7B | 109.5 | H13A—C13—H13B | 109.5 |
| H7A—C7—H7B | 109.5 | C12—C13—H13C | 109.5 |
| O1—C7—H7C | 109.5 | H13A—C13—H13C | 109.5 |
| H7A—C7—H7C | 109.5 | H13B—C13—H13C | 109.5 |
| C8—N1—N2—C9 | 177.63 (12) | C8—C1—C6—C5 | 179.98 (12) |
| C6—C1—C2—O2 | −179.53 (12) | N2—N1—C8—O3 | 1.9 (2) |
| C8—C1—C2—O2 | 0.6 (2) | N2—N1—C8—C1 | −179.09 (11) |
| C6—C1—C2—C3 | −0.1 (2) | C6—C1—C8—O3 | 8.5 (2) |
| C8—C1—C2—C3 | −179.96 (12) | C2—C1—C8—O3 | −171.64 (13) |
| O2—C2—C3—C4 | 179.25 (12) | C6—C1—C8—N1 | −170.50 (12) |
| C1—C2—C3—C4 | −0.2 (2) | C2—C1—C8—N1 | 9.4 (2) |
| C7—O1—C4—C3 | −179.94 (12) | N1—N2—C9—S1 | 179.01 (9) |
| C7—O1—C4—C5 | −0.2 (2) | N1—N2—C9—S2 | −1.42 (18) |
| C2—C3—C4—O1 | −179.83 (12) | C10—S1—C9—N2 | −6.72 (13) |
| C2—C3—C4—C5 | 0.4 (2) | C10—S1—C9—S2 | 173.68 (8) |
| O1—C4—C5—C6 | 179.87 (12) | C12—S2—C9—N2 | 170.45 (12) |
| C3—C4—C5—C6 | −0.4 (2) | C12—S2—C9—S1 | −9.98 (10) |
| C4—C5—C6—C1 | 0.1 (2) | C9—S1—C10—C11 | −178.68 (10) |
| C2—C1—C6—C5 | 0.1 (2) | C9—S2—C12—C13 | 88.23 (12) |
| H··· | ||||
| O2—H2 | 0.82 (2) | 1.80 (2) | 2.6118 (15) | 177 (2) |
| N1—H1 | 0.836 (19) | 1.957 (19) | 2.6384 (16) | 137.9 (17) |
| C3—H3 | 0.93 | 2.52 | 3.1975 (18) | 130 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2 | 0.82 (2) | 1.80 (2) | 2.6118 (15) | 177 (2) |
| N1—H1 | 0.836 (19) | 1.957 (19) | 2.6384 (16) | 137.9 (17) |
| C3—H3 | 0.93 | 2.52 | 3.1975 (18) | 130 |
Symmetry code: (i) .