Literature DB >> 26870554

Crystal structure of N'-[bis-(ethyl-sulfan-yl)methyl-idene]-2-hy-droxy-4-meth-oxy-benzohydrazide.

Paras Nath1, Manoj K Bharty1, Rahul Chaurasia1, Sanyucta Kumari1, Sushil K Gupta2.   

Abstract

In the title compound, C13H18N2O3S2, the n class="Chemical">amide group is in the plane of the -benzoyl ring with a C-N-N-C torsion angle of 177.63 (12)°. The two di-thio-ate groups are in an anti conformation [torsion angles = 173.68 (8) and -9.98 (10)°]. An intra-molecular N-H⋯O hydrogen bond is observed. In the crystal, an O-H⋯O hydrogen bond and a weak C-H⋯O contact involving the same acceptor atom generate an S(6) ring motif and give rise to chains along [010].

Entities:  

Keywords:  crystal structure; di­thio­carbazate; ester; hydrogen bonding

Year:  2015        PMID: 26870554      PMCID: PMC4719926          DOI: 10.1107/S2056989015021271

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For S-alk­yl/aryl esters of di­thio­carbaza­tes that form n class="Chemical">metal complexes, see: Ali et al. (2008 ▸); Singh et al. (2010 ▸, 2012 ▸). For their biological properties, see: Bharti et al. (2000 ▸). For cyclization of potassium salts of N-(aro­yl)hydrazine carbodi­thio­ates, see: Singh et al. (2008 ▸, 2009 ▸); Bharty et al. (2012 ▸). For bidentate, tridentate and multidentate esters, see: Wang et al. (2002 ▸); Tarafder et al. (2000 ▸); Ali et al. (2001 ▸). For related structures, see: Jasinski et al. (2010 ▸); Butcher et al. (2007 ▸); Tayamon et al. (2012 ▸).

Experimental

Crystal data

C13H18N2O3S2 M = 314.41 Monoclinic, a = 8.479 (2) Å b = 12.894 (3) Å c = 13.843 (3) Å β = 104.156 (10)° V = 1467.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 293 K 0.2 × 0.2 × 0.2 mm

Data collection

Rigaku Mercury 375R diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2011 ▸) T min = 0.938, T max = 1.000 12952 measured reflections 2685 independent reflections 2530 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.08 2685 reflections 192 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.27 e Å−3

Data collection: CrystalClear-SM Expert (Rigaku, 2011 ▸); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015021271/jj2195sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015021271/jj2195Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015021271/jj2195Isup3.cml Click here for additional data file. 13 18 2 3 2 . DOI: 10.1107/S2056989015021271/jj2195fig1.tif A reaction scheme showing the synthesis of the title compound, C13H18N2O3S2. Click here for additional data file. 13 18 2 3 2 . DOI: 10.1107/S2056989015021271/jj2195fig2.tif Mol­ecular structure of the title compound, C13H18N2O3S2, showing 50% probability displacement ellipsoids. Click here for additional data file. 13 18 2 3 2 c H carbon­yl n class="Chemical">carbon­yl . DOI: 10.1107/S2056989015021271/jj2195fig3.tif Mol­ecular packing of C13H18N2O3S2 viewed along the n class="Species">c-axis. Dashed lines indicate inter­molecular hydroxyl O—H⋯Ocarbon­ylhydrogen bonds and weak phenyl C—H⋯Ocarbon­yl inter­actions. CCDC reference: 1431260 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H18N2O3S2F(000) = 664
Mr = 314.41Dx = 1.423 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.479 (2) ÅCell parameters from 4529 reflections
b = 12.894 (3) Åθ = 3.0–27.5°
c = 13.843 (3) ŵ = 0.37 mm1
β = 104.156 (10)°T = 293 K
V = 1467.5 (6) Å3Prism, colorless
Z = 40.2 × 0.2 × 0.2 mm
Rigaku Mercury 375R diffractometer2685 independent reflections
Radiation source: Sealed Tube2530 reflections with I > 2σ(I)
Detector resolution: 13.6612 pixels mm-1Rint = 0.027
ω scansθmax = 25.3°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2011)h = −10→10
Tmin = 0.938, Tmax = 1.000k = −15→15
12952 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: mixed
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0391P)2 + 0.8434P] where P = (Fo2 + 2Fc2)/3
2685 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. IR (selected, KBr): 3320 [ν(O–H)], 3276 [ν(N–H)], 1634 [ν(C═ O)], 1094 [ν(N–N)], 876 [ν(C═S)] cm-1. 1H NMR (DMSO-d6); δ [p.p.m.] = 12.26 (s, 1H, OH), 9.77 (s, 1H, NH), 7.80–6.40 (m, 3H, C6H3, phenyl), 3.82 (s, 3H, –OCH3), 3.06 (q, 4H, CH2), 1.44 (t, 6H, CH3). 13C NMR (DMSO-d6) δ [p.p.m.] = 168.3 (C4), 163.3 (C8), 162.0 (C2), 157.9 (C9), 132.1 (C6), 128.2 (C5), 106.8 (C3), 55.2 (C7), 27.1 (C10, C12), 14.4 (C11, C13).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.18898 (4)0.33147 (3)0.40368 (3)0.01707 (12)
S20.36737 (4)0.51413 (3)0.34551 (3)0.01997 (12)
O11.14563 (12)0.43927 (8)0.07886 (8)0.0191 (2)
O20.73950 (13)0.50561 (8)0.24846 (8)0.0175 (2)
H2A0.775 (2)0.5643 (17)0.2477 (15)0.034 (5)*
O30.63540 (13)0.19012 (8)0.25602 (8)0.0211 (2)
N10.55185 (14)0.35185 (9)0.27860 (9)0.0141 (2)
H1A0.571 (2)0.4154 (15)0.2769 (13)0.025 (5)*
N20.43294 (14)0.31214 (9)0.32068 (9)0.0154 (3)
C10.78058 (16)0.32991 (10)0.20495 (10)0.0127 (3)
C20.82146 (17)0.43652 (10)0.20485 (10)0.0136 (3)
C30.94371 (17)0.46929 (11)0.16183 (10)0.0147 (3)
H3A0.96960.53940.16190.018*
C41.02795 (16)0.39806 (11)0.11852 (10)0.0150 (3)
C50.98999 (17)0.29255 (11)0.11710 (10)0.0157 (3)
H5A1.04590.24470.08770.019*
C60.86766 (17)0.26095 (11)0.16032 (10)0.0147 (3)
H6A0.84230.19070.15960.018*
C71.23586 (18)0.36914 (12)0.03325 (12)0.0214 (3)
H7A1.31180.40740.00590.032*
H7B1.16260.3318−0.01900.032*
H7C1.29380.32110.08220.032*
C80.65227 (16)0.28531 (11)0.24849 (10)0.0139 (3)
C90.34330 (17)0.37829 (11)0.35163 (10)0.0145 (3)
C100.19836 (17)0.19372 (11)0.37997 (11)0.0173 (3)
H10A0.18090.18120.30900.021*
H10B0.30440.16660.41340.021*
C110.06688 (18)0.14095 (12)0.41920 (11)0.0220 (3)
H11A0.06280.06870.40210.033*
H11B−0.03630.17250.39000.033*
H11C0.09090.14830.49030.033*
C120.19060 (17)0.56936 (11)0.37838 (11)0.0186 (3)
H12A0.16530.63530.34440.022*
H12B0.09850.52370.35430.022*
C130.2116 (2)0.58643 (13)0.48938 (12)0.0253 (3)
H13A0.11680.62020.50060.038*
H13B0.30540.62910.51460.038*
H13C0.22600.52080.52310.038*
U11U22U33U12U13U23
S10.0167 (2)0.01427 (19)0.0235 (2)0.00006 (13)0.01113 (15)0.00050 (13)
S20.0224 (2)0.01129 (19)0.0307 (2)0.00183 (14)0.01520 (16)0.00151 (14)
O10.0207 (5)0.0153 (5)0.0264 (6)−0.0009 (4)0.0156 (4)−0.0009 (4)
O20.0195 (5)0.0094 (5)0.0276 (6)−0.0009 (4)0.0135 (4)−0.0018 (4)
O30.0208 (5)0.0106 (5)0.0367 (6)−0.0004 (4)0.0161 (5)0.0010 (4)
N10.0136 (6)0.0098 (6)0.0214 (6)−0.0017 (5)0.0091 (5)0.0004 (5)
N20.0143 (6)0.0147 (6)0.0195 (6)−0.0011 (5)0.0085 (5)0.0010 (5)
C10.0111 (6)0.0128 (7)0.0140 (6)0.0004 (5)0.0027 (5)0.0004 (5)
C20.0143 (6)0.0125 (7)0.0135 (6)0.0020 (5)0.0026 (5)−0.0002 (5)
C30.0171 (7)0.0112 (6)0.0160 (7)−0.0008 (5)0.0043 (5)0.0001 (5)
C40.0140 (7)0.0180 (7)0.0137 (6)−0.0007 (6)0.0048 (5)0.0023 (5)
C50.0163 (7)0.0148 (7)0.0174 (7)0.0018 (5)0.0069 (6)−0.0019 (5)
C60.0167 (7)0.0102 (6)0.0173 (7)0.0000 (5)0.0044 (5)−0.0005 (5)
C70.0212 (8)0.0198 (7)0.0284 (8)0.0029 (6)0.0162 (6)−0.0001 (6)
C80.0125 (7)0.0134 (7)0.0154 (6)−0.0001 (5)0.0024 (5)−0.0001 (5)
C90.0148 (7)0.0124 (7)0.0164 (6)−0.0002 (5)0.0043 (5)0.0018 (5)
C100.0175 (7)0.0136 (7)0.0221 (7)−0.0015 (6)0.0073 (6)−0.0003 (6)
C110.0207 (8)0.0219 (8)0.0242 (8)−0.0059 (6)0.0071 (6)0.0020 (6)
C120.0170 (7)0.0144 (7)0.0242 (7)0.0042 (6)0.0048 (6)−0.0018 (6)
C130.0302 (9)0.0225 (8)0.0259 (8)−0.0003 (7)0.0121 (7)−0.0043 (6)
S1—C91.7485 (14)C4—C51.397 (2)
S1—C101.8115 (15)C5—C61.380 (2)
S2—C91.7678 (15)C5—H5A0.9300
S2—C121.8151 (15)C6—H6A0.9300
O1—C41.3591 (17)C7—H7A0.9600
O1—C71.4276 (17)C7—H7B0.9600
O2—C21.3588 (17)C7—H7C0.9600
O2—H2A0.82 (2)C10—C111.516 (2)
O3—C81.2430 (17)C10—H10A0.9700
N1—C81.3448 (18)C10—H10B0.9700
N1—N21.3804 (16)C11—H11A0.9600
N1—H1A0.836 (19)C11—H11B0.9600
N2—C91.2837 (18)C11—H11C0.9600
C1—C61.3932 (19)C12—C131.519 (2)
C1—C21.4176 (19)C12—H12A0.9700
C1—C81.4827 (19)C12—H12B0.9700
C2—C31.382 (2)C13—H13A0.9600
C3—C41.387 (2)C13—H13B0.9600
C3—H3A0.9300C13—H13C0.9600
C9—S1—C10101.15 (7)H7B—C7—H7C109.5
C9—S2—C12105.35 (7)O3—C8—N1120.63 (13)
C4—O1—C7117.17 (11)O3—C8—C1121.87 (12)
C2—O2—H2A111.7 (14)N1—C8—C1117.49 (12)
C8—N1—N2118.51 (12)N2—C9—S1118.17 (11)
C8—N1—H1A118.4 (13)N2—C9—S2123.89 (11)
N2—N1—H1A122.7 (13)S1—C9—S2117.94 (8)
C9—N2—N1116.59 (12)C11—C10—S1107.85 (10)
C6—C1—C2117.53 (12)C11—C10—H10A110.1
C6—C1—C8116.99 (12)S1—C10—H10A110.1
C2—C1—C8125.48 (12)C11—C10—H10B110.1
O2—C2—C3120.66 (12)S1—C10—H10B110.1
O2—C2—C1118.91 (12)H10A—C10—H10B108.4
C3—C2—C1120.42 (13)C10—C11—H11A109.5
C2—C3—C4120.25 (13)C10—C11—H11B109.5
C2—C3—H3A119.9H11A—C11—H11B109.5
C4—C3—H3A119.9C10—C11—H11C109.5
O1—C4—C3114.98 (12)H11A—C11—H11C109.5
O1—C4—C5124.37 (13)H11B—C11—H11C109.5
C3—C4—C5120.65 (13)C13—C12—S2114.24 (11)
C6—C5—C4118.46 (13)C13—C12—H12A108.7
C6—C5—H5A120.8S2—C12—H12A108.7
C4—C5—H5A120.8C13—C12—H12B108.7
C5—C6—C1122.69 (13)S2—C12—H12B108.7
C5—C6—H6A118.7H12A—C12—H12B107.6
C1—C6—H6A118.7C12—C13—H13A109.5
O1—C7—H7A109.5C12—C13—H13B109.5
O1—C7—H7B109.5H13A—C13—H13B109.5
H7A—C7—H7B109.5C12—C13—H13C109.5
O1—C7—H7C109.5H13A—C13—H13C109.5
H7A—C7—H7C109.5H13B—C13—H13C109.5
C8—N1—N2—C9177.63 (12)C8—C1—C6—C5179.98 (12)
C6—C1—C2—O2−179.53 (12)N2—N1—C8—O31.9 (2)
C8—C1—C2—O20.6 (2)N2—N1—C8—C1−179.09 (11)
C6—C1—C2—C3−0.1 (2)C6—C1—C8—O38.5 (2)
C8—C1—C2—C3−179.96 (12)C2—C1—C8—O3−171.64 (13)
O2—C2—C3—C4179.25 (12)C6—C1—C8—N1−170.50 (12)
C1—C2—C3—C4−0.2 (2)C2—C1—C8—N19.4 (2)
C7—O1—C4—C3−179.94 (12)N1—N2—C9—S1179.01 (9)
C7—O1—C4—C5−0.2 (2)N1—N2—C9—S2−1.42 (18)
C2—C3—C4—O1−179.83 (12)C10—S1—C9—N2−6.72 (13)
C2—C3—C4—C50.4 (2)C10—S1—C9—S2173.68 (8)
O1—C4—C5—C6179.87 (12)C12—S2—C9—N2170.45 (12)
C3—C4—C5—C6−0.4 (2)C12—S2—C9—S1−9.98 (10)
C4—C5—C6—C10.1 (2)C9—S1—C10—C11−178.68 (10)
C2—C1—C6—C50.1 (2)C9—S2—C12—C1388.23 (12)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O3i0.82 (2)1.80 (2)2.6118 (15)177 (2)
N1—H1A···O20.836 (19)1.957 (19)2.6384 (16)137.9 (17)
C3—H3A···O3i0.932.523.1975 (18)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2A⋯O3i 0.82 (2)1.80 (2)2.6118 (15)177 (2)
N1—H1A⋯O20.836 (19)1.957 (19)2.6384 (16)137.9 (17)
C3—H3A⋯O3i 0.932.523.1975 (18)130

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[Bis(benzyl-sulfan-yl)methyl-idene]-4-meth-oxy-benzohydrazide.

Authors:  Jerry P Jasinski; Ray J Butcher; S K Kushawaha; M K Bharty; N K Singh
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03

3.  N'-[Bis(benzyl-sulfan-yl)methyl-idene]benzohydrazide.

Authors:  Shahedeh Tayamon; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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