Literature DB >> 22717438

Biosynthesis of the tunicamycin antibiotics proceeds via unique exo-glycal intermediates.

Filip J Wyszynski1, Seung Seo Lee, Tomoaki Yabe, Hua Wang, Juan Pablo Gomez-Escribano, Mervyn J Bibb, Soo Jae Lee, Gideon J Davies, Benjamin G Davis.   

Abstract

The tunicamycins are archetypal nucleoside antibiotics targeting bacterial peptidoglycan biosynthesis and eukaryotic protein N-glycosylation. Understanding the biosynthesis of their unusual carbon framework may lead to variants with improved selectivity. Here, we demonstrate in vitro recapitulation of key sugar-manipulating enzymes from this pathway. TunA is found to exhibit unusual regioselectivity in the reduction of a key α,β-unsaturated ketone. The product of this reaction is shown to be the preferred substrate for TunF--an epimerase that converts the glucose derivative to a galactose. In Streptomyces strains in which another gene (tunB) is deleted, the biosynthesis is shown to stall at this exo-glycal product. These investigations confirm the combined TunA/F activity and delineate the ordering of events in the metabolic pathway. This is the first time these surprising exo-glycal intermediates have been seen in biology. They suggest that construction of the aminodialdose core of tunicamycin exploits their enol ether motif in a mode of C-C bond formation not previously observed in nature, to create an 11-carbon chain.

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Year:  2012        PMID: 22717438     DOI: 10.1038/nchem.1351

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  37 in total

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Authors:  Simon T M Allard; Konstantinos Beis; Marie France Giraud; Adrian D Hegeman; Jeffrey W Gross; Rupert C Wilmouth; Chris Whitfield; Michael Graninger; Paul Messner; Andrew G Allen; Duncan J Maskell; James H Naismith
Journal:  Structure       Date:  2002-01       Impact factor: 5.006

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Streptovirudins, new antibiotics with antibacterial and antiviral activity. I. Culture taxonomy, fermentation and production of streptovirudin complex.

Authors:  H Thrum; K Eckardt; G Bradler; R Fügner; E Tonew; M Tonew
Journal:  J Antibiot (Tokyo)       Date:  1975-07       Impact factor: 2.649

4.  Characterization of enzymatic processes by rapid mix-quench mass spectrometry: the case of dTDP-glucose 4,6-dehydratase.

Authors:  J W Gross; A D Hegeman; M M Vestling; P A Frey
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

Review 5.  Adenosyl radical: reagent and catalyst in enzyme reactions.

Authors:  E Neil G Marsh; Dustin P Patterson; Lei Li
Journal:  Chembiochem       Date:  2010-03-22       Impact factor: 3.164

6.  Modes of action of tunicamycin, liposidomycin B, and mureidomycin A: inhibition of phospho-N-acetylmuramyl-pentapeptide translocase from Escherichia coli.

Authors:  P E Brandish; K I Kimura; M Inukai; R Southgate; J T Lonsdale; T D Bugg
Journal:  Antimicrob Agents Chemother       Date:  1996-07       Impact factor: 5.191

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Tunicamycin, a new antibiotic. I. Isolation and characterization of tunicamycin.

Authors:  A Takatsuki; K Arima; G Tamura
Journal:  J Antibiot (Tokyo)       Date:  1971-04       Impact factor: 2.649

9.  Integration site for Streptomyces phage phiBT1 and development of site-specific integrating vectors.

Authors:  Matthew A Gregory; Rob Till; Margaret C M Smith
Journal:  J Bacteriol       Date:  2003-09       Impact factor: 3.490

Review 10.  Short-chain dehydrogenases/reductases (SDR).

Authors:  H Jörnvall; B Persson; M Krook; S Atrian; R Gonzàlez-Duarte; J Jeffery; D Ghosh
Journal:  Biochemistry       Date:  1995-05-09       Impact factor: 3.162

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  31 in total

1.  Natural product biosynthesis: Tackling tunicamycin.

Authors:  Ethan D Goddard-Borger; Stephen G Withers
Journal:  Nat Chem       Date:  2012-06-21       Impact factor: 24.427

2.  Antimicrobial activity of Alcaligenes sp. HPC 1271 against multidrug resistant bacteria.

Authors:  Atya Kapley; Himgouri Tanksale; Sneha Sagarkar; A R Prasad; Rathod Aravind Kumar; Nandita Sharma; Asifa Qureshi; Hemant J Purohit
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3.  PelX is a UDP-N-acetylglucosamine C4-epimerase involved in Pel polysaccharide-dependent biofilm formation.

Authors:  Lindsey S Marmont; Gregory B Whitfield; Roland Pfoh; Rohan J Williams; Trevor E Randall; Alexandra Ostaszewski; Erum Razvi; Ryan A Groves; Howard Robinson; Mark Nitz; Matthew R Parsek; Ian A Lewis; John C Whitney; Joe J Harrison; P Lynne Howell
Journal:  J Biol Chem       Date:  2020-06-29       Impact factor: 5.157

Review 4.  A comprehensive review of glycosylated bacterial natural products.

Authors:  Sherif I Elshahawi; Khaled A Shaaban; Madan K Kharel; Jon S Thorson
Journal:  Chem Soc Rev       Date:  2015-11-07       Impact factor: 54.564

5.  MraY-antibiotic complex reveals details of tunicamycin mode of action.

Authors:  Jonna K Hakulinen; Jenny Hering; Gisela Brändén; Hongming Chen; Arjan Snijder; Margareta Ek; Patrik Johansson
Journal:  Nat Chem Biol       Date:  2017-01-09       Impact factor: 15.040

6.  Elucidation of the Herbicidin Tailoring Pathway Offers Insights into Its Structural Diversity.

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Journal:  Org Lett       Date:  2019-02-14       Impact factor: 6.005

Review 7.  Natural and engineered biosynthesis of nucleoside antibiotics in Actinomycetes.

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Journal:  J Ind Microbiol Biotechnol       Date:  2015-07-08       Impact factor: 3.346

8.  Identification and Interrogation of the Herbicidin Biosynthetic Gene Cluster: First Insight into the Biosynthesis of a Rare Undecose Nucleoside Antibiotic.

Authors:  Geng-Min Lin; Anthony J Romo; Priscilla H Liem; Zhang Chen; Hung-Wen Liu
Journal:  J Am Chem Soc       Date:  2017-11-08       Impact factor: 15.419

Review 9.  The biosynthesis of nitrogen-, sulfur-, and high-carbon chain-containing sugars.

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Journal:  Chem Soc Rev       Date:  2013-01-25       Impact factor: 54.564

10.  Quinovosamycins: new tunicamycin-type antibiotics in which the α, β-1″,11'-linked N-acetylglucosamine residue is replaced by N-acetylquinovosamine.

Authors:  Neil Pj Price; David P Labeda; Todd A Naumann; Karl E Vermillion; Michael J Bowman; Mark A Berhow; William W Metcalf; Kenneth M Bischoff
Journal:  J Antibiot (Tokyo)       Date:  2016-05-18       Impact factor: 2.649

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