Literature DB >> 22711840

Widely accessible method for superresolution fluorescence imaging of living systems.

Peter Dedecker1, Gary C H Mo, Thomas Dertinger, Jin Zhang.   

Abstract

Superresolution fluorescence microscopy overcomes the diffraction resolution barrier and allows the molecular intricacies of life to be revealed with greatly enhanced detail. However, many current superresolution techniques still face limitations and their implementation is typically associated with a steep learning curve. Patterned illumination-based superresolution techniques [e.g., stimulated emission depletion (STED), reversible optically-linear fluorescence transitions (RESOLFT), and saturated structured illumination microscopy (SSIM)] require specialized equipment, whereas single-molecule-based approaches [e.g., stochastic optical reconstruction microscopy (STORM), photo-activation localization microscopy (PALM), and fluorescence-PALM (F-PALM)] involve repetitive single-molecule localization, which requires its own set of expertise and is also temporally demanding. Here we present a superresolution fluorescence imaging method, photochromic stochastic optical fluctuation imaging (pcSOFI). In this method, irradiating a reversibly photoswitching fluorescent protein at an appropriate wavelength produces robust single-molecule intensity fluctuations, from which a superresolution picture can be extracted by a statistical analysis of the fluctuations in each pixel as a function of time, as previously demonstrated in SOFI. This method, which uses off-the-shelf equipment, genetically encodable labels, and simple and rapid data acquisition, is capable of providing two- to threefold-enhanced spatial resolution, significant background rejection, markedly improved contrast, and favorable temporal resolution in living cells. Furthermore, both 3D and multicolor imaging are readily achievable. Because of its ease of use and high performance, we anticipate that pcSOFI will prove an attractive approach for superresolution imaging.

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Year:  2012        PMID: 22711840      PMCID: PMC3390831          DOI: 10.1073/pnas.1204917109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Mutational and biochemical analysis of plasma membrane targeting mediated by the farnesylated, polybasic carboxy terminus of K-ras4B.

Authors:  M O Roy; R Leventis; J R Silvius
Journal:  Biochemistry       Date:  2000-07-18       Impact factor: 3.162

2.  Super-resolution 3D microscopy of live whole cells using structured illumination.

Authors:  Lin Shao; Peter Kner; E Hesper Rego; Mats G L Gustafsson
Journal:  Nat Methods       Date:  2011-10-16       Impact factor: 28.547

3.  Loss of mitochondrial membrane potential is associated with increase in mitochondrial volume: physiological role in neurones.

Authors:  Dzhamilja Safiulina; Vladimir Veksler; Alexander Zharkovsky; Allen Kaasik
Journal:  J Cell Physiol       Date:  2006-02       Impact factor: 6.384

4.  Fast and reversible photoswitching of the fluorescent protein dronpa as evidenced by fluorescence correlation spectroscopy.

Authors:  Peter Dedecker; Jun-ichi Hotta; Ryoko Ando; Atsushi Miyawaki; Yves Engelborghs; Johan Hofkens
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

5.  Highlighted generation of fluorescence signals using simultaneous two-color irradiation on Dronpa mutants.

Authors:  Ryoko Ando; Cristina Flors; Hideaki Mizuno; Johan Hofkens; Atsushi Miyawaki
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

6.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

7.  Fluorescence nanoscopy by ground-state depletion and single-molecule return.

Authors:  Jonas Fölling; Mariano Bossi; Hannes Bock; Rebecca Medda; Christian A Wurm; Birka Hein; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2008-09-15       Impact factor: 28.547

8.  Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa.

Authors:  Satoshi Habuchi; Ryoko Ando; Peter Dedecker; Wendy Verheijen; Hideaki Mizuno; Atsushi Miyawaki; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

9.  Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.

Authors:  Xinxin Gao; Jin Zhang
Journal:  Mol Biol Cell       Date:  2008-08-13       Impact factor: 4.138

10.  Fast, three-dimensional super-resolution imaging of live cells.

Authors:  Sara A Jones; Sang-Hee Shim; Jiang He; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-05-08       Impact factor: 28.547

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  61 in total

1.  Pulsed interleaved excitation fluctuation imaging.

Authors:  Jelle Hendrix; Waldemar Schrimpf; Matthias Höller; Don C Lamb
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

Review 2.  Super-resolution localization microscopy with photoactivatable fluorescent marker proteins.

Authors:  Per Niklas Hedde; G Ulrich Nienhaus
Journal:  Protoplasma       Date:  2013-10-27       Impact factor: 3.356

Review 3.  Live-cell imaging of cell signaling using genetically encoded fluorescent reporters.

Authors:  Qiang Ni; Sohum Mehta; Jin Zhang
Journal:  FEBS J       Date:  2017-07-06       Impact factor: 5.542

Review 4.  Strategic labelling approaches for RNA single-molecule spectroscopy.

Authors:  Gerd Hanspach; Sven Trucks; Martin Hengesbach
Journal:  RNA Biol       Date:  2019-04-21       Impact factor: 4.652

5.  Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy.

Authors:  Peter Dedecker; Sam Duwé; Robert K Neely; Jin Zhang
Journal:  J Biomed Opt       Date:  2012-12       Impact factor: 3.170

Review 6.  Single cell optical imaging and spectroscopy.

Authors:  Anthony S Stender; Kyle Marchuk; Chang Liu; Suzanne Sander; Matthew W Meyer; Emily A Smith; Bhanu Neupane; Gufeng Wang; Junjie Li; Ji-Xin Cheng; Bo Huang; Ning Fang
Journal:  Chem Rev       Date:  2013-02-14       Impact factor: 60.622

7.  Signal Discrimination Between Fluorescent Proteins in Live Cells by Long-wavelength Optical Modulation.

Authors:  Amy E Jablonski; Jung-Cheng Hsiang; Pritha Bagchi; Nathan Hull; Chris I Richards; Christoph J Fahrni; Robert M Dickson
Journal:  J Phys Chem Lett       Date:  2012-11-19       Impact factor: 6.475

Review 8.  Genetically Encodable Fluorescent and Bioluminescent Biosensors Light Up Signaling Networks.

Authors:  Xin Zhou; Sohum Mehta; Jin Zhang
Journal:  Trends Biochem Sci       Date:  2020-07-10       Impact factor: 13.807

9.  Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI).

Authors:  Maria Elena Gallina; Jianmin Xu; Thomas Dertinger; Adva Aizer; Yaron Shav-Tal; Shimon Weiss
Journal:  Opt Nanoscopy       Date:  2013-02-25

Review 10.  Chromophore chemistry of fluorescent proteins controlled by light.

Authors:  Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Chem Biol       Date:  2014-05-13       Impact factor: 8.822

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