Literature DB >> 28613457

Live-cell imaging of cell signaling using genetically encoded fluorescent reporters.

Qiang Ni1, Sohum Mehta1, Jin Zhang1,2.   

Abstract

Synergistic advances in fluorescent protein engineering and live-cell imaging techniques in recent years have fueled the concurrent development and application of genetically encoded fluorescent reporters that are tailored for tracking signaling dynamics in living systems over multiple length and time scales. These biosensors are uniquely suited for this challenging task, owing to their specificity, sensitivity, and versatility, as well as to the noninvasive and nondestructive nature of fluorescence and the power of genetic encoding. Over the past 10 years, a growing number of fluorescent reporters have been developed for tracking a wide range of biological signals in living cells and animals, including second messenger and metabolite dynamics, enzyme activation and activity, and cell cycle progression and neuronal activity. Many of these biosensors are gaining wide use and are proving to be indispensable for unraveling the complex biological functions of individual signaling molecules in their native environment, the living cell, shedding new light on the structural and molecular underpinnings of cell signaling. In this review, we highlight recent advances in protein engineering that are likely to help expand and improve the design and application of these valuable tools. We then turn our focus to specific examples of live-cell imaging using genetically encoded fluorescent reporters as an important platform for advancing our understanding of G protein-coupled receptor signaling and neuronal activity.
© 2017 Federation of European Biochemical Societies.

Entities:  

Keywords:  FRET; GPCR signaling; biosensor; fluorescent protein; neuronal activity

Mesh:

Substances:

Year:  2017        PMID: 28613457      PMCID: PMC5730511          DOI: 10.1111/febs.14134

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  126 in total

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Authors:  Axel Kirchhofer; Jonas Helma; Katrin Schmidthals; Carina Frauer; Sheng Cui; Annette Karcher; Mireille Pellis; Serge Muyldermans; Corella S Casas-Delucchi; M Cristina Cardoso; Heinrich Leonhardt; Karl-Peter Hopfner; Ulrich Rothbauer
Journal:  Nat Struct Mol Biol       Date:  2009-12-13       Impact factor: 15.369

Review 3.  Nanobodies: natural single-domain antibodies.

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Journal:  Annu Rev Biochem       Date:  2013-03-13       Impact factor: 23.643

Review 4.  Genetically encoded molecular probes to visualize and perturb signaling dynamics in living biological systems.

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Review 5.  Genetically encoded indicators of neuronal activity.

Authors:  Michael Z Lin; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

6.  A genetically encoded calcium indicator for chronic in vivo two-photon imaging.

Authors:  Marco Mank; Alexandre Ferrão Santos; Stephan Direnberger; Thomas D Mrsic-Flogel; Sonja B Hofer; Valentin Stein; Thomas Hendel; Dierk F Reiff; Christiaan Levelt; Alexander Borst; Tobias Bonhoeffer; Mark Hübener; Oliver Griesbeck
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

Review 7.  Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations.

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8.  A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.

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10.  Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space.

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1.  Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.

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Review 2.  Genetically Encodable Fluorescent and Bioluminescent Biosensors Light Up Signaling Networks.

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Journal:  Trends Biochem Sci       Date:  2020-07-10       Impact factor: 13.807

3.  Bioluminescence Imaging of Neuronal Network Dynamics Using Aequorin-Based Calcium Sensors.

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Journal:  Methods Mol Biol       Date:  2021

4.  Genetically Encoded Ratiometric RNA-Based Sensors for Quantitative Imaging of Small Molecules in Living Cells.

Authors:  Rigumula Wu; Aruni P K K Karunanayake Mudiyanselage; Fatemeh Shafiei; Bin Zhao; Yousef Bagheri; Qikun Yu; Kathleen McAuliffe; Kewei Ren; Mingxu You
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-24       Impact factor: 15.336

Review 5.  Subcellular Organization of GPCR Signaling.

Authors:  Kelsie Eichel; Mark von Zastrow
Journal:  Trends Pharmacol Sci       Date:  2018-01-28       Impact factor: 14.819

6.  Establishment of a fluorescent reporter of RNA-polymerase II activity to identify dormant cells.

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Journal:  Nat Commun       Date:  2021-06-03       Impact factor: 14.919

7.  FluoSTEPs: Fluorescent biosensors for monitoring compartmentalized signaling within endogenous microdomains.

Authors:  Brian Tenner; Jason Z Zhang; Yonghoon Kwon; Veronica Pessino; Siyu Feng; Bo Huang; Sohum Mehta; Jin Zhang
Journal:  Sci Adv       Date:  2021-05-21       Impact factor: 14.136

8.  AIMTOR, a BRET biosensor for live imaging, reveals subcellular mTOR signaling and dysfunctions.

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9.  Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration.

Authors:  Jeremy W Linsley; Atmiyata Tripathi; Irina Epstein; Galina Schmunk; Elliot Mount; Matthew Campioni; Viral Oza; Mariya Barch; Ashkan Javaherian; Tomasz J Nowakowski; Siddharth Samsi; Steven Finkbeiner
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10.  eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis.

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