Literature DB >> 24324919

Resolving the spatial relationship between intracellular components by dual color super resolution optical fluctuations imaging (SOFI).

Maria Elena Gallina1, Jianmin Xu, Thomas Dertinger, Adva Aizer, Yaron Shav-Tal, Shimon Weiss.   

Abstract

BACKGROUND: Multi-color super-resolution (SR) imaging microscopy techniques can resolve ultrastructura relationships between- and provide co-localization information of- different proteins inside the cell or even within organelles at a higher resolution than afforded by conventional diffraction-limited imaging. While still very challenging, important SR colocalization results have been reported in recent years using STED, PALM and STORM techniques.
RESULTS: In this work, we demonstrate dual-color Super Resolution Optical Fluctuations Imaging (SOFI) using a standard far-field fluorescence microscope and different color blinking quantum dots. We define the spatial relationship between hDcp1a, a processing body (P-body, PB) protein, and the tubulin cytoskeletal network. Our finding could open up new perspectives on the role of the cytoskeleton in PB formation and assembly. Further insights into PB internal organization are also reported and discussed.
CONCLUSIONS: Our results demonstrate the suitability and facile use of multi-color SOFI for the investigation of intracellular ultrastructures.

Entities:  

Keywords:  Dual color; Fluorescence microscopy; P-bodies; SOFI; Superresolution

Year:  2013        PMID: 24324919      PMCID: PMC3855418          DOI: 10.1186/2192-2853-2-2

Source DB:  PubMed          Journal:  Opt Nanoscopy


  35 in total

1.  Saturated patterned excitation microscopy--a concept for optical resolution improvement.

Authors:  Rainer Heintzmann; Thomas M Jovin; Christoph Cremer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2002-08       Impact factor: 2.129

Review 2.  mRNA localization and the cytoskeleton.

Authors:  Miguel López de Heredia; Ralf-Peter Jansen
Journal:  Curr Opin Cell Biol       Date:  2004-02       Impact factor: 8.382

3.  Superresolution optical fluctuation imaging (SOFI).

Authors:  Thomas Dertinger; Ryan Colyer; Robert Vogel; Mike Heilemann; Markus Sauer; Jörg Enderlein; Shimon Weiss
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

4.  Widely accessible method for superresolution fluorescence imaging of living systems.

Authors:  Peter Dedecker; Gary C H Mo; Thomas Dertinger; Jin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-18       Impact factor: 11.205

5.  Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies.

Authors:  George L Sen; Helen M Blau
Journal:  Nat Cell Biol       Date:  2005-05-22       Impact factor: 28.824

6.  P-body formation is a consequence, not the cause, of RNA-mediated gene silencing.

Authors:  Ana Eulalio; Isabelle Behm-Ansmant; Daniel Schweizer; Elisa Izaurralde
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

7.  Transiently increased colocalization of vesicular glutamate transporters 1 and 2 at single axon terminals during postnatal development of mouse neocortex: a quantitative analysis with correlation coefficient.

Authors:  Kouichi Nakamura; Akiya Watakabe; Hiroyuki Hioki; Fumino Fujiyama; Yasuyo Tanaka; Tetsuo Yamamori; Takeshi Kaneko
Journal:  Eur J Neurosci       Date:  2007-12       Impact factor: 3.386

8.  SOFI-based 3D superresolution sectioning with a widefield microscope.

Authors:  Thomas Dertinger; Jianmin Xu; Omeed Foroutan Naini; Robert Vogel; Shimon Weiss
Journal:  Opt Nanoscopy       Date:  2012-12-01

9.  Microtubule disruption targets HIF-1alpha mRNA to cytoplasmic P-bodies for translational repression.

Authors:  Marisa Carbonaro; Aurora O'Brate; Paraskevi Giannakakou
Journal:  J Cell Biol       Date:  2011-01-10       Impact factor: 10.539

10.  Stress granules and processing bodies are dynamically linked sites of mRNP remodeling.

Authors:  Nancy Kedersha; Georg Stoecklin; Maranatha Ayodele; Patrick Yacono; Jens Lykke-Andersen; Marvin J Fritzler; Donalyn Scheuner; Randal J Kaufman; David E Golan; Paul Anderson
Journal:  J Cell Biol       Date:  2005-06-20       Impact factor: 10.539

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  1 in total

1.  Quantum Dots for Improved Single-Molecule Localization Microscopy.

Authors:  Jennifer M Urban; Wesley Chiang; Jennetta W Hammond; Nicole M B Cogan; Angela Litzburg; Rebeckah Burke; Harry A Stern; Harris A Gelbard; Bradley L Nilsson; Todd D Krauss
Journal:  J Phys Chem B       Date:  2021-03-08       Impact factor: 2.991

  1 in total

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