Literature DB >> 22711131

DNA assembler method for construction of zeaxanthin-producing strains of Saccharomyces cerevisiae.

Zengyi Shao1, Yunzi Luo, Huimin Zhao.   

Abstract

DNA assembler enables design and rapid construction of biochemical pathways in a one-step fashion by exploitation of the in vivo homologous recombination mechanism in Saccharomyces cerevisiae. It has many applications in pathway engineering, metabolic engineering, combinatorial biology, and synthetic biology. Here we use the zeaxanthin biosynthetic pathway as an example to describe the key steps in the construction of pathways containing multiple genes using the DNA assembler approach. Methods for the construction of the clones, S. cerevisiae transformation, and zeaxanthin production and detection are shown.

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Year:  2012        PMID: 22711131      PMCID: PMC4323269          DOI: 10.1007/978-1-61779-918-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

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Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

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Authors:  Yajun Yan; Abhijeet Kohli; Mattheos A G Koffas
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 3.  Synthetic biology for synthetic chemistry.

Authors:  Jay D Keasling
Journal:  ACS Chem Biol       Date:  2008-01-18       Impact factor: 5.100

4.  Recombination-mediated PCR-directed plasmid construction in vivo in yeast.

Authors:  K R Oldenburg; K T Vo; S Michaelis; C Paddon
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

5.  Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension.

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Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

6.  Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture.

Authors:  Jared L Hjersted; Michael A Henson; Radhakrishnan Mahadevan
Journal:  Biotechnol Bioeng       Date:  2007-08-01       Impact factor: 4.530

7.  Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli.

Authors:  Douglas J Pitera; Chris J Paddon; Jack D Newman; Jay D Keasling
Journal:  Metab Eng       Date:  2006-11-23       Impact factor: 9.783

8.  Total biosynthesis of hydrocortisone from a simple carbon source in yeast.

Authors:  Florence Ménard Szczebara; Cathy Chandelier; Coralie Villeret; Amélie Masurel; Stéphane Bourot; Catherine Duport; Sophie Blanchard; Agnès Groisillier; Eric Testet; Patricia Costaglioli; Gilles Cauet; Eric Degryse; David Balbuena; Jacques Winter; Tilman Achstetter; Roberto Spagnoli; Denis Pompon; Bruno Dumas
Journal:  Nat Biotechnol       Date:  2003-01-06       Impact factor: 54.908

9.  Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae.

Authors:  Joseph A Chemler; Yajun Yan; Mattheos A G Koffas
Journal:  Microb Cell Fact       Date:  2006-05-23       Impact factor: 5.328

10.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

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  7 in total

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Authors:  Min Xu; Gerard D Wright
Journal:  J Ind Microbiol Biotechnol       Date:  2018-11-16       Impact factor: 3.346

Review 2.  Genetic platforms for heterologous expression of microbial natural products.

Authors:  Jia Jia Zhang; Xiaoyu Tang; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2019-06-14       Impact factor: 13.423

Review 3.  Streptomyces as Microbial Chassis for Heterologous Protein Expression.

Authors:  Soonkyu Hwang; Yongjae Lee; Ji Hun Kim; Gahyeon Kim; Hyeseong Kim; Woori Kim; Suhyung Cho; Bernhard O Palsson; Byung-Kwan Cho
Journal:  Front Bioeng Biotechnol       Date:  2021-12-21

4.  DNA fragments assembly based on nicking enzyme system.

Authors:  Rui-Yan Wang; Zhen-Yu Shi; Ying-Ying Guo; Jin-Chun Chen; Guo-Qiang Chen
Journal:  PLoS One       Date:  2013-03-06       Impact factor: 3.240

5.  A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences.

Authors:  Niels G A Kuijpers; Daniel Solis-Escalante; Lizanne Bosman; Marcel van den Broek; Jack T Pronk; Jean-Marc Daran; Pascale Daran-Lapujade
Journal:  Microb Cell Fact       Date:  2013-05-10       Impact factor: 5.328

6.  Engineering Saccharomyces cerevisiae for the production of the valuable monoterpene ester geranyl acetate.

Authors:  Tao Wu; Siwei Li; Bolin Zhang; Changhao Bi; Xueli Zhang
Journal:  Microb Cell Fact       Date:  2018-06-05       Impact factor: 5.328

7.  Biosynthesis of antibiotic chuangxinmycin from Actinoplanes tsinanensis.

Authors:  Yuanyuan Shi; Zhibo Jiang; Xingxing Li; Lijie Zuo; Xuan Lei; Liyan Yu; Linzhuan Wu; Jiandong Jiang; Bin Hong
Journal:  Acta Pharm Sin B       Date:  2017-08-12       Impact factor: 11.413

  7 in total

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