Literature DB >> 22688415

Rapid, accurate particle tracking by calculation of radial symmetry centers.

Raghuveer Parthasarathy1.   

Abstract

I introduce an algorithm for subpixel localization of imaged objects based on an analytic, non-iterative calculation of the best-fit radial symmetry center. This approach yields tracking accuracies that are near theoretical limits, similarly to Gaussian fitting, but with orders-of-magnitude faster execution time, lower sensitivity to nearby particles and applicability to any radially symmetric intensity distribution. I demonstrate the method with several types of data, including super-resolution microscopy images.

Mesh:

Year:  2012        PMID: 22688415     DOI: 10.1038/nmeth.2071

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  18 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  Counting bungarotoxin binding sites of nicotinic acetylcholine receptors in mammalian cells with high signal/noise ratios.

Authors:  Paul D Simonson; Hannah A Deberg; Pinghua Ge; John K Alexander; Okunola Jeyifous; William N Green; Paul R Selvin
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

Review 4.  Virus trafficking - learning from single-virus tracking.

Authors:  Boerries Brandenburg; Xiaowei Zhuang
Journal:  Nat Rev Microbiol       Date:  2007-03       Impact factor: 60.633

5.  Multiple-particle tracking and two-point microrheology in cells.

Authors:  John C Crocker; Brenton D Hoffman
Journal:  Methods Cell Biol       Date:  2007       Impact factor: 1.441

Review 6.  Single-molecule fluorescence to study molecular motors.

Authors:  Hyokeun Park; Erdal Toprak; Paul R Selvin
Journal:  Q Rev Biophys       Date:  2007-07-31       Impact factor: 5.318

7.  Image analysis with rapid and accurate two-dimensional Gaussian fitting.

Authors:  Stephen M Anthony; Steve Granick
Journal:  Langmuir       Date:  2009-07-21       Impact factor: 3.882

8.  Online image analysis software for photoactivation localization microscopy.

Authors:  Per Niklas Hedde; Jochen Fuchs; Franz Oswald; Jörg Wiedenmann; Gerd Ulrich Nienhaus
Journal:  Nat Methods       Date:  2009-10       Impact factor: 28.547

9.  Single-particle tracking photoactivated localization microscopy for mapping single-molecule dynamics.

Authors:  Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

10.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

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  102 in total

1.  Faster and more versatile tools for super-resolution fluorescence microscopy.

Authors:  Alex Small
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

2.  Single-molecule fluorescence imaging to quantify membrane protein dynamics and oligomerization in living plant cells.

Authors:  Xiaohua Wang; Xiaojuan Li; Xin Deng; Doan-Trung Luu; Christophe Maurel; Jinxing Lin
Journal:  Nat Protoc       Date:  2015-11-19       Impact factor: 13.491

3.  Micromechanics of cellularized biopolymer networks.

Authors:  Christopher A R Jones; Matthew Cibula; Jingchen Feng; Emma A Krnacik; David H McIntyre; Herbert Levine; Bo Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

Review 4.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors:  Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal:  Chem Rev       Date:  2017-02-02       Impact factor: 60.622

5.  Two-point particle tracking microrheology of nematic complex fluids.

Authors:  Manuel Gómez-González; Juan C Del Álamo
Journal:  Soft Matter       Date:  2016-06-29       Impact factor: 3.679

6.  Comparative study of methods to calibrate the stiffness of a single-beam gradient-force optical tweezers over various laser trapping powers.

Authors:  Mohammad Sarshar; Winson T Wong; Bahman Anvari
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

7.  Quantitative evaluation of software packages for single-molecule localization microscopy.

Authors:  Daniel Sage; Hagai Kirshner; Thomas Pengo; Nico Stuurman; Junhong Min; Suliana Manley; Michael Unser
Journal:  Nat Methods       Date:  2015-06-15       Impact factor: 28.547

8.  Single-pixel interior filling function approach for detecting and correcting errors in particle tracking.

Authors:  Stanislav Burov; Patrick Figliozzi; Binhua Lin; Stuart A Rice; Norbert F Scherer; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-27       Impact factor: 11.205

9.  Interference based localization of single emitters.

Authors:  Amihai Meiri; Carl G Ebeling; Jason Martineau; Zeev Zalevsky; Jordan M Gerton; Rajesh Menon
Journal:  Opt Express       Date:  2017-07-24       Impact factor: 3.894

10.  High-Performance Image-Based Measurements of Biological Forces and Interactions in a Dual Optical Trap.

Authors:  Jessica L Killian; James T Inman; Michelle D Wang
Journal:  ACS Nano       Date:  2018-11-20       Impact factor: 15.881

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