Literature DB >> 12785814

Dynamic NMR line-shape analysis demonstrates that the villin headpiece subdomain folds on the microsecond time scale.

Minghui Wang1, Yuefeng Tang, Satoshi Sato, Liliya Vugmeyster, C James McKnight, Daniel P Raleigh.   

Abstract

There is considerable interest in small proteins that fold very rapidly. These proteins have become attractive targets for both theoretical and computational studies. The independently folded 36-residue villin headpiece subdomain has been the subject of a number of such studies and is predicted to fold quickly. We demonstrate using dynamic NMR line-shape analysis that the protein folds on the time scale of 10 mus. Folding rates were directly estimated between 56 and 78 degrees C using resolved protein resonances from three different residues at both 500 and 700 MHz. The rates estimated using different residues and different field strengths agree well with each other. The estimated folding rate lies between 0.5 and 2.0 x 105 s-1 over this temperature range. The folding rate depends only weakly on temperature.

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Year:  2003        PMID: 12785814     DOI: 10.1021/ja028752b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  58 in total

1.  Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein.

Authors:  Yongjin Zhu; Darwin O V Alonso; Kosuke Maki; Cheng-Yen Huang; Steven J Lahr; Valerie Daggett; Heinrich Roder; William F DeGrado; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

2.  Applications of NMR spin relaxation methods for measuring biological motions.

Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

3.  Fast and faster: a designed variant of the B-domain of protein A folds in 3 microsec.

Authors:  Pooja Arora; Terrence G Oas; Jeffrey K Myers
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

4.  Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

Authors:  Christopher D Snow; Linlin Qiu; Deguo Du; Feng Gai; Stephen J Hagen; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-12       Impact factor: 11.205

5.  Critical nucleation size in the folding of small apparently two-state proteins.

Authors:  Yawen Bai; Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

6.  Simple few-state models reveal hidden complexity in protein folding.

Authors:  Kyle A Beauchamp; Robert McGibbon; Yu-Shan Lin; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

7.  Hydrophobic core formation and dehydration in protein folding studied by generalized-ensemble simulations.

Authors:  Takao Yoda; Yuji Sugita; Yuko Okamoto
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

8.  Enhanced sampling and applications in protein folding in explicit solvent.

Authors:  Cheng Zhang; Jianpeng Ma
Journal:  J Chem Phys       Date:  2010-06-28       Impact factor: 3.488

9.  Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data.

Authors:  Athanasios S Baltzis; Nicholas M Glykos
Journal:  Protein Sci       Date:  2015-12-16       Impact factor: 6.725

10.  Detection of a transient intermediate in a rapid protein folding process by solid-state nuclear magnetic resonance.

Authors:  Kan-Nian Hu; Wai-Ming Yau; Robert Tycko
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

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