Literature DB >> 22670213

Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm.

K Marias1, D Dionysiou, V Sakkalis, N Graf, R M Bohle, P V Coveney, S Wan, A Folarin, P Büchler, M Reyes, G Clapworthy, E Liu, J Sabczynski, T Bily, A Roniotis, M Tsiknakis, E Kolokotroni, S Giatili, C Veith, E Messe, H Stenzhorn, Yoo-Jin Kim, S Zasada, A N Haidar, C May, S Bauer, T Wang, Y Zhao, M Karasek, R Grewer, A Franz, G Stamatakos.   

Abstract

The challenge of modelling cancer presents a major opportunity to improve our ability to reduce mortality from malignant neoplasms, improve treatments and meet the demands associated with the individualization of care needs. This is the central motivation behind the ContraCancrum project. By developing integrated multi-scale cancer models, ContraCancrum is expected to contribute to the advancement of in silico oncology through the optimization of cancer treatment in the patient-individualized context by simulating the response to various therapeutic regimens. The aim of the present paper is to describe a novel paradigm for designing clinically driven multi-scale cancer modelling by bringing together basic science and information technology modules. In addition, the integration of the multi-scale tumour modelling components has led to novel concepts of personalized clinical decision support in the context of predictive oncology, as is also discussed in the paper. Since clinical adaptation is an inelastic prerequisite, a long-term clinical adaptation procedure of the models has been initiated for two tumour types, namely non-small cell lung cancer and glioblastoma multiforme; its current status is briefly summarized.

Entities:  

Keywords:  brain cancer; cancer modelling; lung cancer; predictive oncology

Year:  2011        PMID: 22670213      PMCID: PMC3262443          DOI: 10.1098/rsfs.2010.0037

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  23 in total

1.  A vision and strategy for the virtual physiological human in 2010 and beyond.

Authors:  Peter Hunter; Peter V Coveney; Bernard de Bono; Vanessa Diaz; John Fenner; Alejandro F Frangi; Peter Harris; Rod Hose; Peter Kohl; Pat Lawford; Keith McCormack; Miriam Mendes; Stig Omholt; Alfio Quarteroni; John Skår; Jesper Tegner; S Randall Thomas; Ioannis Tollis; Ioannis Tsamardinos; Johannes H G M van Beek; Marco Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-06-13       Impact factor: 4.226

2.  Simulating chemotherapeutic schemes in the individualized treatment context: the paradigm of glioblastoma multiforme treated by temozolomide in vivo.

Authors:  Georgios S Stamatakos; Vassilis P Antipas; Nikolaos K Uzunoglu
Journal:  Comput Biol Med       Date:  2005-10-03       Impact factor: 4.589

3.  Spatially adaptive active contours: a semi-automatic tumor segmentation framework.

Authors:  Cristina Farmaki; Konstantinos Marias; Vangelis Sakkalis; Norbert Graf
Journal:  Int J Comput Assist Radiol Surg       Date:  2010-05-17       Impact factor: 2.924

4.  The natural history of lung cancer: a review based on rates of tumour growth.

Authors:  D M Geddes
Journal:  Br J Dis Chest       Date:  1979-01

5.  Rapid and accurate ranking of binding affinities of epidermal growth factor receptor sequences with selected lung cancer drugs.

Authors:  Shunzhou Wan; Peter V Coveney
Journal:  J R Soc Interface       Date:  2011-01-12       Impact factor: 4.118

6.  Thymidine labelling index as prognostic factor in resected non-small cell lung cancer.

Authors:  A Alama; M Costantini; L Repetto; P F Conte; J Serrano; A Nicolin; F Barbieri; A Ardizzoni; P Bruzzi
Journal:  Eur J Cancer       Date:  1990       Impact factor: 9.162

7.  An advanced discrete state-discrete event multiscale simulation model of the response of a solid tumor to chemotherapy: Mimicking a clinical study.

Authors:  G S Stamatakos; E A Kolokotroni; D D Dionysiou; E Ch Georgiadi; C Desmedt
Journal:  J Theor Biol       Date:  2010-05-31       Impact factor: 2.691

8.  The EuroPhysiome, STEP and a roadmap for the virtual physiological human.

Authors:  J W Fenner; B Brook; G Clapworthy; P V Coveney; V Feipel; H Gregersen; D R Hose; P Kohl; P Lawford; K M McCormack; D Pinney; S R Thomas; S Van Sint Jan; S Waters; M Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-13       Impact factor: 4.226

9.  Exploiting clinical trial data drastically narrows the window of possible solutions to the problem of clinical adaptation of a multiscale cancer model.

Authors:  Georgios S Stamatakos; Eleni C Georgiadi; Norbert Graf; Eleni A Kolokotroni; Dimitra D Dionysiou
Journal:  PLoS One       Date:  2011-03-03       Impact factor: 3.240

10.  Applying a 4D multiscale in vivo tumor growth model to the exploration of radiotherapy scheduling: the effects of weekend treatment gaps and p53 gene status on the response of fast growing solid tumors.

Authors:  Dimitra D Dionysiou; Georgios S Stamatakos
Journal:  Cancer Inform       Date:  2007-02-16
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  11 in total

Review 1.  Clinical implications of in silico mathematical modeling for glioblastoma: a critical review.

Authors:  Maria Protopapa; Anna Zygogianni; Georgios S Stamatakos; Christos Antypas; Christina Armpilia; Nikolaos K Uzunoglu; Vassilis Kouloulias
Journal:  J Neurooncol       Date:  2017-10-28       Impact factor: 4.130

Review 2.  Integrated PK-PD and agent-based modeling in oncology.

Authors:  Zhihui Wang; Joseph D Butner; Vittorio Cristini; Thomas S Deisboeck
Journal:  J Pharmacokinet Pharmacodyn       Date:  2015-01-15       Impact factor: 2.745

3.  A study on the predictability of acute lymphoblastic leukaemia response to treatment using a hybrid oncosimulator.

Authors:  Eleftherios Ouzounoglou; Eleni Kolokotroni; Martin Stanulla; Georgios S Stamatakos
Journal:  Interface Focus       Date:  2017-12-15       Impact factor: 3.906

4.  Semantic biomedical resource discovery: a Natural Language Processing framework.

Authors:  Pepi Sfakianaki; Lefteris Koumakis; Stelios Sfakianakis; Galatia Iatraki; Giorgos Zacharioudakis; Norbert Graf; Kostas Marias; Manolis Tsiknakis
Journal:  BMC Med Inform Decis Mak       Date:  2015-09-30       Impact factor: 2.796

5.  The standardized histogram shift of t2 magnetic resonance image (MRI) signal intensities of nephroblastoma does not predict histopathological diagnostic information.

Authors:  Sabine Müller; Ruslan David; Kostas Marias; Norbert Graf
Journal:  Cancer Inform       Date:  2015-05-12

6.  E-Science technologies in a workflow for personalized medicine using cancer screening as a case study.

Authors:  Ola Spjuth; Andreas Karlsson; Mark Clements; Keith Humphreys; Emma Ivansson; Jim Dowling; Martin Eklund; Alexandra Jauhiainen; Kamila Czene; Henrik Grönberg; Pär Sparén; Fredrik Wiklund; Abbas Cheddad; Þorgerður Pálsdóttir; Mattias Rantalainen; Linda Abrahamsson; Erwin Laure; Jan-Eric Litton; Juni Palmgren
Journal:  J Am Med Inform Assoc       Date:  2017-09-01       Impact factor: 4.497

7.  Simulating radiotherapy effect in high-grade glioma by using diffusive modeling and brain atlases.

Authors:  Alexandros Roniotis; Kostas Marias; Vangelis Sakkalis; Georgios C Manikis; Michalis Zervakis
Journal:  J Biomed Biotechnol       Date:  2012-10-03

8.  Differentiation resistance through altered retinoblastoma protein function in acute lymphoblastic leukemia: in silico modeling of the deregulations in the G1/S restriction point pathway.

Authors:  Eleftherios Ouzounoglou; Dimitra Dionysiou; Georgios S Stamatakos
Journal:  BMC Syst Biol       Date:  2016-03-01

Review 9.  Integrating Multiscale Modeling with Drug Effects for Cancer Treatment.

Authors:  Xiangfang L Li; Wasiu O Oduola; Lijun Qian; Edward R Dougherty
Journal:  Cancer Inform       Date:  2016-01-13

10.  In Silico Oncology: Quantification of the In Vivo Antitumor Efficacy of Cisplatin-Based Doublet Therapy in Non-Small Cell Lung Cancer (NSCLC) through a Multiscale Mechanistic Model.

Authors:  Eleni Kolokotroni; Dimitra Dionysiou; Christian Veith; Yoo-Jin Kim; Jörg Sabczynski; Astrid Franz; Aleksandar Grgic; Jan Palm; Rainer M Bohle; Georgios Stamatakos
Journal:  PLoS Comput Biol       Date:  2016-09-22       Impact factor: 4.475

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