Literature DB >> 20439264

A vision and strategy for the virtual physiological human in 2010 and beyond.

Peter Hunter1, Peter V Coveney, Bernard de Bono, Vanessa Diaz, John Fenner, Alejandro F Frangi, Peter Harris, Rod Hose, Peter Kohl, Pat Lawford, Keith McCormack, Miriam Mendes, Stig Omholt, Alfio Quarteroni, John Skår, Jesper Tegner, S Randall Thomas, Ioannis Tollis, Ioannis Tsamardinos, Johannes H G M van Beek, Marco Viceconti.   

Abstract

European funding under framework 7 (FP7) for the virtual physiological human (VPH) project has been in place now for nearly 2 years. The VPH network of excellence (NoE) is helping in the development of common standards, open-source software, freely accessible data and model repositories, and various training and dissemination activities for the project. It is also helping to coordinate the many clinically targeted projects that have been funded under the FP7 calls. An initial vision for the VPH was defined by framework 6 strategy for a European physiome (STEP) project in 2006. It is now time to assess the accomplishments of the last 2 years and update the STEP vision for the VPH. We consider the biomedical science, healthcare and information and communications technology challenges facing the project and we propose the VPH Institute as a means of sustaining the vision of VPH beyond the time frame of the NoE.

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Year:  2010        PMID: 20439264      PMCID: PMC2944384          DOI: 10.1098/rsta.2010.0048

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  1 in total

1.  The EuroPhysiome, STEP and a roadmap for the virtual physiological human.

Authors:  J W Fenner; B Brook; G Clapworthy; P V Coveney; V Feipel; H Gregersen; D R Hose; P Kohl; P Lawford; K M McCormack; D Pinney; S R Thomas; S Van Sint Jan; S Waters; M Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-13       Impact factor: 4.226

  1 in total
  33 in total

1.  Verification of cardiac tissue electrophysiology simulators using an N-version benchmark.

Authors:  Steven A Niederer; Eric Kerfoot; Alan P Benson; Miguel O Bernabeu; Olivier Bernus; Chris Bradley; Elizabeth M Cherry; Richard Clayton; Flavio H Fenton; Alan Garny; Elvio Heidenreich; Sander Land; Mary Maleckar; Pras Pathmanathan; Gernot Plank; José F Rodríguez; Ishani Roy; Frank B Sachse; Gunnar Seemann; Ola Skavhaug; Nic P Smith
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-11-13       Impact factor: 4.226

Review 2.  Phenomics: the next challenge.

Authors:  David Houle; Diddahally R Govindaraju; Stig Omholt
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

3.  Computational modeling of airway and pulmonary vascular structure and function: development of a "lung physiome".

Authors:  Merryn Tawhai; A Clark; G Donovan; K Burrowes
Journal:  Crit Rev Biomed Eng       Date:  2011

Review 4.  Improving the physiological realism of experimental models.

Authors:  Kalyan C Vinnakota; Chae Y Cha; Patrik Rorsman; Robert S Balaban; Andre La Gerche; Richard Wade-Martins; Daniel A Beard; Jeroen A L Jeneson
Journal:  Interface Focus       Date:  2016-04-06       Impact factor: 3.906

5.  OntoVIP: an ontology for the annotation of object models used for medical image simulation.

Authors:  Bernard Gibaud; Germain Forestier; Hugues Benoit-Cattin; Frédéric Cervenansky; Patrick Clarysse; Denis Friboulet; Alban Gaignard; Patrick Hugonnard; Carole Lartizien; Hervé Liebgott; Johan Montagnat; Joachim Tabary; Tristan Glatard
Journal:  J Biomed Inform       Date:  2014-07-16       Impact factor: 6.317

Review 6.  Deep learning in pharmacogenomics: from gene regulation to patient stratification.

Authors:  Alexandr A Kalinin; Gerald A Higgins; Narathip Reamaroon; Sayedmohammadreza Soroushmehr; Ari Allyn-Feuer; Ivo D Dinov; Kayvan Najarian; Brian D Athey
Journal:  Pharmacogenomics       Date:  2018-04-26       Impact factor: 2.533

7.  Editorial: TBME Letters special issue on multiscale modeling and analysis in computational biology and medicine--part-2.

Authors:  Jean-Louis Coatrieux; Alejandro F Frangi; Grace C Y Peng; David Z D'Argenio; Vasilis Z Marmarelis; Anushka Michailova
Journal:  IEEE Trans Biomed Eng       Date:  2011-12       Impact factor: 4.538

Review 8.  Simulation of cellular biochemical system kinetics.

Authors:  Daniel A Beard
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-17

9.  Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm.

Authors:  K Marias; D Dionysiou; V Sakkalis; N Graf; R M Bohle; P V Coveney; S Wan; A Folarin; P Büchler; M Reyes; G Clapworthy; E Liu; J Sabczynski; T Bily; A Roniotis; M Tsiknakis; E Kolokotroni; S Giatili; C Veith; E Messe; H Stenzhorn; Yoo-Jin Kim; S Zasada; A N Haidar; C May; S Bauer; T Wang; Y Zhao; M Karasek; R Grewer; A Franz; G Stamatakos
Journal:  Interface Focus       Date:  2011-03-30       Impact factor: 3.906

Review 10.  Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between?

Authors:  Steven A Niederer; Nic P Smith
Journal:  J Physiol       Date:  2016-07-03       Impact factor: 5.182

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