Literature DB >> 14981235

From The Cover: The X3LYP extended density functional for accurate descriptions of nonbond interactions, spin states, and thermochemical properties.

Xin Xu1, William A Goddard.   

Abstract

We derive the form for an exact exchange energy density for a density decaying with Gaussian-like behavior at long range. Based on this, we develop the X3LYP (extended hybrid functional combined with Lee-Yang-Parr correlation functional) extended functional for density functional theory to significantly improve the accuracy for hydrogen-bonded and van der Waals complexes while also improving the accuracy in heats of formation, ionization potentials, electron affinities, and total atomic energies [over the most popular and accurate method, B3LYP (Becke three-parameter hybrid functional combined with Lee-Yang-Parr correlation functional)]. X3LYP also leads to a good description of dipole moments, polarizabilities, and accurate excitation energies from s to d orbitals for transition metal atoms and ions. We suggest that X3LYP will be useful for predicting ligand binding in proteins and DNA.

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Year:  2004        PMID: 14981235      PMCID: PMC374194          DOI: 10.1073/pnas.0308730100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Quantum mechanics simulation of protein dynamics on long timescale.

Authors:  H Liu; M Elstner; E Kaxiras; T Frauenheim; J Hermans; W Yang
Journal:  Proteins       Date:  2001-09-01

3.  Tight bound and convexity constraint on the exchange-correlation-energy functional in the low-density limit, and other formal tests of generalized-gradient approximations.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1993-10-15

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

5.  Ground-state correlation energies for two- to ten-electron atomic ions.

Authors: 
Journal:  Phys Rev A       Date:  1991-12-01       Impact factor: 3.140

6.  Ground-state correlation energies for atomic ions with 3 to 18 electrons.

Authors: 
Journal:  Phys Rev A       Date:  1993-05       Impact factor: 3.140

7.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

8.  Pair interactions of rare-gas atoms as a test of exchange-energy-density functionals in regions of large density gradients.

Authors: 
Journal:  Phys Rev A       Date:  1993-06       Impact factor: 3.140

  8 in total
  45 in total

1.  A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Authors:  Nadya Kobko; Mateusz Marianski; Amparo Asensio; Robert Wieczorek; J J Dannenberg
Journal:  Comput Theor Chem       Date:  2011-11-22       Impact factor: 1.926

2.  Structures and formation mechanisms of aquo/hydroxo oligomeric beryllium in aqueous solution: a density functional theory study.

Authors:  Xiaoyan Jin; Rongbao Liao; Hai Wu; Zhengjie Huang; Hong Zhang
Journal:  J Mol Model       Date:  2015-08-14       Impact factor: 1.810

3.  Structure, redox, pKa, spin. A golden tetrad for understanding metalloenzyme energetics and reaction pathways.

Authors:  Louis Noodleman; Wen-Ge Han
Journal:  J Biol Inorg Chem       Date:  2006-07-08       Impact factor: 3.358

4.  Synthesis and properties of oxygen-centered tetradecaimido hexatantalum clusters.

Authors:  Jamin L Krinsky; Laura L Anderson; John Arnold; Robert G Bergman
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  The ferroelectric and cubic phases in BaTiO3 ferroelectrics are also antiferroelectric.

Authors:  Qingsong Zhang; Tahir Cagin; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-25       Impact factor: 11.205

6.  A systematical comparison of DFT methods in reproducing the interaction energies of halide series with protein moieties.

Authors:  Xiuhong Liu; Peng Zhou; Zhicai Shang
Journal:  J Mol Model       Date:  2011-09-09       Impact factor: 1.810

7.  When does a functional correctly describe both the structure and the energy of the transition state?

Authors:  Neil Qiang Su; Pascal Pernot; Xin Xu; Andreas Savin
Journal:  J Mol Model       Date:  2017-02-09       Impact factor: 1.810

8.  Comparison of some dispersion-corrected and traditional functionals with CCSD(T) and MP2 ab initio methods: dispersion, induction, and basis set superposition error.

Authors:  Dipankar Roy; Mateusz Marianski; Neepa T Maitra; J J Dannenberg
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

9.  Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.

Authors:  Mateusz Marianski; Amparo Asensio; J J Dannenberg
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

10.  Insight into the interaction between DNA bases and defective graphenes: covalent or non-covalent.

Authors:  Zhenfeng Xu; Biswa Ranjan Meher; Darnashley Eustache; Yixuan Wang
Journal:  J Mol Graph Model       Date:  2013-10-24       Impact factor: 2.518

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