Literature DB >> 22611467

Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer.

Lei Nie, Hsing-Ju Wu, Jung-Mao Hsu, Shih-Shin Chang, Adam M Labaff, Chia-Wei Li, Yan Wang, Jennifer L Hsu, Mien-Chie Hung.   

Abstract

With rapid development of sequencing technologies such as deep sequencing and whole genome high-density tiling array, we now know that most of the "junk" genomic sequences are transcribed as non-coding RNAs (ncRNAs). A large number of long ncRNA transcripts (> 200bp) have been identified, and these long ncRNAs (LncRNAs) are found to be crucial regulators for epigenetic modulation, transcription, and translation. In this review, we briefly summarize the regulatory function of LncRNAs with a particular focus on the underlying mechanisms of LncRNAs in oncogenesis, tumor metastasis and suppression.

Entities:  

Keywords:  Long non-coding RNA (LncRNA); competitive endogenous RNA (ceRNA); epigenetic regulation; natural antisense RNA (NAT); oncogenic lncRNA; pseudogene transcript

Year:  2012        PMID: 22611467      PMCID: PMC3353529     

Source DB:  PubMed          Journal:  Am J Transl Res        ISSN: 1943-8141            Impact factor:   4.060


  148 in total

Review 1.  The history of cancer epigenetics.

Authors:  Andrew P Feinberg; Benjamin Tycko
Journal:  Nat Rev Cancer       Date:  2004-02       Impact factor: 60.716

2.  Identification of natural antisense transcripts involved in human colorectal cancer development.

Authors:  Keisuke Kohno; Mitsuru Chiba; Soichiro Murata; Sugiru Pak; Kentaro Nagai; Masayoshi Yamamoto; Kazuhiko Yanagisawa; Akihiko Kobayashi; Hiroshi Yasue; Nobuhiro Ohkohchi
Journal:  Int J Oncol       Date:  2010-12       Impact factor: 5.650

3.  Pseudogenes as an alternative source of natural antisense transcripts.

Authors:  Enrique M Muro; Miguel A Andrade-Navarro
Journal:  BMC Evol Biol       Date:  2010-11-03       Impact factor: 3.260

4.  PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer.

Authors:  V Srikantan; Z Zou; G Petrovics; L Xu; M Augustus; L Davis; J R Livezey; T Connell; I A Sesterhenn; K Yoshino; G S Buzard; F K Mostofi; D G McLeod; J W Moul; S Srivastava
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

5.  Familial Wiedemann-Beckwith syndrome and a second Wilms tumor locus both map to 11p15.5.

Authors:  A Koufos; P Grundy; K Morgan; K A Aleck; T Hadro; B C Lampkin; A Kalbakji; W K Cavenee
Journal:  Am J Hum Genet       Date:  1989-05       Impact factor: 11.025

Review 6.  Expression and function of a large non-coding RNA gene XIST in human cancer.

Authors:  Sarah M Weakley; Hao Wang; Qizhi Yao; Changyi Chen
Journal:  World J Surg       Date:  2011-08       Impact factor: 3.352

7.  A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition.

Authors:  Manuel Beltran; Isabel Puig; Cristina Peña; José Miguel García; Ana Belén Alvarez; Raúl Peña; Félix Bonilla; Antonio García de Herreros
Journal:  Genes Dev       Date:  2008-03-15       Impact factor: 11.361

8.  A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo.

Authors:  Keguo Li; Yannick Blum; Anjali Verma; Zhong Liu; Kallal Pramanik; Noah R Leigh; Chang Z Chun; Ganesh V Samant; Baofeng Zhao; Maija K Garnaas; Mark A Horswill; Stephen A Stanhope; Paula E North; Robert Q Miao; George A Wilkinson; Markus Affolter; Ramani Ramchandran
Journal:  Blood       Date:  2009-10-30       Impact factor: 22.113

9.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

10.  Enhanced reprogramming of Xist by induced upregulation of Tsix and Dnmt3a.

Authors:  Jeong Tae Do; Dong Wook Han; Luca Gentile; Inge Sobek-Klocke; Martin Stehling; Hans R Schöler
Journal:  Stem Cells       Date:  2008-08-28       Impact factor: 6.277

View more
  104 in total

Review 1.  LncRNAs: emerging players in gene regulation and disease pathogenesis.

Authors:  Mina Kazemzadeh; Reza Safaralizadeh; Ayla Valinezhad Orang
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

2.  New twists on long noncoding RNAs: from mobile elements to motile cancer cells.

Authors:  Tuan M Nguyen; Sumayya Alchalabi; Adewunmi Oluwatoyosi; Ali S Ropri; Jason I Herschkowitz; Jeffrey M Rosen
Journal:  RNA Biol       Date:  2020-06-10       Impact factor: 4.652

3.  Effects of chronic caffeine exposure during adolescence and subsequent acute caffeine challenge during adulthood on rat brain serotonergic systems.

Authors:  M R Arnold; P H Williams; J A McArthur; A R Archuleta; C E O'Neill; J E Hassell; D G Smith; R K Bachtell; C A Lowry
Journal:  Neuropharmacology       Date:  2018-12-20       Impact factor: 5.250

4.  The long noncoding RNA MALAT1 predicts human pancreatic islet isolation quality.

Authors:  Wilson Km Wong; Guozhi Jiang; Anja E Sørensen; Yi Vee Chew; Cody Lee-Maynard; David Liuwantara; Lindy Williams; Philip J O'Connell; Louise T Dalgaard; Ronald C Ma; Wayne J Hawthorne; Mugdha V Joglekar; Anandwardhan A Hardikar
Journal:  JCI Insight       Date:  2019-07-30

5.  Long non-coding RNA HOTTIP is correlated with progression and prognosis in tongue squamous cell carcinoma.

Authors:  Hua Zhang; Lei Zhao; Ying-Xue Wang; Mian Xi; Shi-Liang Liu; Li-Ling Luo
Journal:  Tumour Biol       Date:  2015-06-10

Review 6.  From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease.

Authors:  Miao Sun; W Lee Kraus
Journal:  Endocr Rev       Date:  2014-11-26       Impact factor: 19.871

7.  Long noncoding RNA MHENCR promotes melanoma progression via regulating miR-425/489-mediated PI3K-Akt pathway.

Authors:  Xiangjun Chen; Hao Dong; Sha Liu; Li Yu; Dexiong Yan; Xingwei Yao; Weijing Sun; Dezhi Han; Guozhen Gao
Journal:  Am J Transl Res       Date:  2017-01-15       Impact factor: 4.060

8.  Malignant transformation of colonic epithelial cells by a colon-derived long noncoding RNA.

Authors:  Jeffrey L Franklin; Carl R Rankin; Shawn Levy; Jay R Snoddy; Bing Zhang; Mary Kay Washington; J Michael Thomson; Robert H Whitehead; Robert J Coffey
Journal:  Biochem Biophys Res Commun       Date:  2013-09-14       Impact factor: 3.575

Review 9.  Epigenetics and the developmental origins of inflammatory bowel diseases.

Authors:  Richard Kellermayer
Journal:  Can J Gastroenterol       Date:  2012-12       Impact factor: 3.522

10.  Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre.

Authors:  Ezgi Hacisuleyman; Loyal A Goff; Cole Trapnell; Adam Williams; Jorge Henao-Mejia; Lei Sun; Patrick McClanahan; David G Hendrickson; Martin Sauvageau; David R Kelley; Michael Morse; Jesse Engreitz; Eric S Lander; Mitch Guttman; Harvey F Lodish; Richard Flavell; Arjun Raj; John L Rinn
Journal:  Nat Struct Mol Biol       Date:  2014-01-26       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.