Literature DB >> 22609626

Facile backbone structure determination of human membrane proteins by NMR spectroscopy.

Christian Klammt1, Innokentiy Maslennikov, Monika Bayrhuber, Cédric Eichmann, Navratna Vajpai, Ellis Jeremy Chua Chiu, Katherine Y Blain, Luis Esquivies, June Hyun Jung Kwon, Bartosz Balana, Ursula Pieper, Andrej Sali, Paul A Slesinger, Witek Kwiatkowski, Roland Riek, Senyon Choe.   

Abstract

Although nearly half of today's major pharmaceutical drugs target human integral membrane proteins (hIMPs), only 30 hIMP structures are currently available in the Protein Data Bank, largely owing to inefficiencies in protein production. Here we describe a strategy for the rapid structure determination of hIMPs, using solution NMR spectroscopy with systematically labeled proteins produced via cell-free expression. We report new backbone structures of six hIMPs, solved in only 18 months from 15 initial targets. Application of our protocols to an additional 135 hIMPs with molecular weight <30 kDa yielded 38 hIMPs suitable for structural characterization by solution NMR spectroscopy without additional optimization.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22609626      PMCID: PMC3723349          DOI: 10.1038/nmeth.2033

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  52 in total

1.  Automated NMR structure calculation with CYANA.

Authors:  Peter Güntert
Journal:  Methods Mol Biol       Date:  2004

2.  Modulation of G-protein coupled receptor sample quality by modified cell-free expression protocols: a case study of the human endothelin A receptor.

Authors:  Friederike Junge; Laura M Luh; Davide Proverbio; Birgit Schäfer; Rupert Abele; Michael Beyermann; Volker Dötsch; Frank Bernhard
Journal:  J Struct Biol       Date:  2010-05-09       Impact factor: 2.867

3.  The impact of window functions on NMR-based paramagnetic relaxation enhancement measurements in membrane proteins.

Authors:  Wade D Van Horn; Andrew J Beel; Congbao Kang; Charles R Sanders
Journal:  Biochim Biophys Acta       Date:  2009-09-12

4.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

5.  Structural origins of nitroxide side chain dynamics on membrane protein α-helical sites.

Authors:  Brett M Kroncke; Peter S Horanyi; Linda Columbus
Journal:  Biochemistry       Date:  2010-11-08       Impact factor: 3.162

6.  Mammalian gene expression program resiliency: the roles of multiple coactivator mechanisms in hypoxia-responsive transcription.

Authors:  Lawryn H Kasper; Paul K Brindle
Journal:  Cell Cycle       Date:  2006-01-16       Impact factor: 4.534

Review 7.  Emerging roles of FAM14 family members (G1P3/ISG 6-16 and ISG12/IFI27) in innate immunity and cancer.

Authors:  Venugopalan Cheriyath; Douglas W Leaman; Ernest C Borden
Journal:  J Interferon Cytokine Res       Date:  2010-10-12       Impact factor: 2.607

8.  Cell free expression and functional reconstitution of eukaryotic drug transporters.

Authors:  Thorsten Keller; Daniel Schwarz; Frank Bernhard; Volker Dötsch; Carola Hunte; Valentin Gorboulev; Hermann Koepsell
Journal:  Biochemistry       Date:  2008-03-25       Impact factor: 3.162

9.  Discovery of genes essential for heme biosynthesis through large-scale gene expression analysis.

Authors:  Roland Nilsson; Iman J Schultz; Eric L Pierce; Kathleen A Soltis; Amornrat Naranuntarat; Diane M Ward; Joshua M Baughman; Prasad N Paradkar; Paul D Kingsley; Valeria C Culotta; Jerry Kaplan; James Palis; Barry H Paw; Vamsi K Mootha
Journal:  Cell Metab       Date:  2009-08       Impact factor: 27.287

10.  ModBase, a database of annotated comparative protein structure models, and associated resources.

Authors:  Ursula Pieper; Benjamin M Webb; David T Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C Meng; Eric F Pettersen; Conrad C Huang; Ruchira S Datta; Parthasarathy Sampathkumar; Mallur S Madhusudhan; Kimmen Sjölander; Thomas E Ferrin; Stephen K Burley; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-11-19       Impact factor: 16.971

View more
  37 in total

1.  Regulatory role of the respiratory supercomplex factors in Saccharomyces cerevisiae.

Authors:  Camilla Rydström Lundin; Christoph von Ballmoos; Martin Ott; Pia Ädelroth; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

2.  TMEM14C is required for erythroid mitochondrial heme metabolism.

Authors:  Yvette Y Yien; Raymond F Robledo; Iman J Schultz; Naoko Takahashi-Makise; Babette Gwynn; Daniel E Bauer; Abhishek Dass; Gloria Yi; Liangtao Li; Gordon J Hildick-Smith; Jeffrey D Cooney; Eric L Pierce; Kyla Mohler; Tamara A Dailey; Non Miyata; Paul D Kingsley; Caterina Garone; Shilpa M Hattangadi; Hui Huang; Wen Chen; Ellen M Keenan; Dhvanit I Shah; Thorsten M Schlaeger; Salvatore DiMauro; Stuart H Orkin; Alan B Cantor; James Palis; Carla M Koehler; Harvey F Lodish; Jerry Kaplan; Diane M Ward; Harry A Dailey; John D Phillips; Luanne L Peters; Barry H Paw
Journal:  J Clin Invest       Date:  2014-08-26       Impact factor: 14.808

3.  Solution NMR resonance assignment strategies for β-barrel membrane proteins.

Authors:  Daniel A Fox; Linda Columbus
Journal:  Protein Sci       Date:  2013-06-27       Impact factor: 6.725

4.  Conformational stabilization of the membrane embedded targeting domain of the lysosomal peptide transporter TAPL for solution NMR.

Authors:  Franz Tumulka; Christian Roos; Frank Löhr; Christoph Bock; Frank Bernhard; Volker Dötsch; Rupert Abele
Journal:  J Biomol NMR       Date:  2013-09-07       Impact factor: 2.835

5.  The use of amphipols for NMR structural characterization of 7-TM proteins.

Authors:  Shantha Elter; Thomas Raschle; Sabine Arens; Aldino Viegas; Vladimir Gelev; Manuel Etzkorn; Gerhard Wagner
Journal:  J Membr Biol       Date:  2014-05-25       Impact factor: 1.843

Review 6.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

7.  Higd1a is a positive regulator of cytochrome c oxidase.

Authors:  Takaharu Hayashi; Yoshihiro Asano; Yasunori Shintani; Hiroshi Aoyama; Hidetaka Kioka; Osamu Tsukamoto; Masahide Hikita; Kyoko Shinzawa-Itoh; Kazuaki Takafuji; Shuichiro Higo; Hisakazu Kato; Satoru Yamazaki; Ken Matsuoka; Atsushi Nakano; Hiroshi Asanuma; Masanori Asakura; Tetsuo Minamino; Yu-ichi Goto; Takashi Ogura; Masafumi Kitakaze; Issei Komuro; Yasushi Sakata; Tomitake Tsukihara; Shinya Yoshikawa; Seiji Takashima
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

8.  Structural basis of mitochondrial dysfunction in response to cytochrome c phosphorylation at tyrosine 48.

Authors:  Blas Moreno-Beltrán; Alejandra Guerra-Castellano; Antonio Díaz-Quintana; Rebecca Del Conte; Sofía M García-Mauriño; Sofía Díaz-Moreno; Katiuska González-Arzola; Carlos Santos-Ocaña; Adrián Velázquez-Campoy; Miguel A De la Rosa; Paola Turano; Irene Díaz-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

9.  Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.

Authors:  Shenlin Wang; Rachel A Munro; Lichi Shi; Izuru Kawamura; Takashi Okitsu; Akimori Wada; So-Young Kim; Kwang-Hwan Jung; Leonid S Brown; Vladimir Ladizhansky
Journal:  Nat Methods       Date:  2013-09-08       Impact factor: 28.547

10.  Drug screening strategy for human membrane proteins: from NMR protein backbone structure to in silica- and NMR-screened hits.

Authors:  Steffen Lindert; Innokentiy Maslennikov; Ellis J C Chiu; Levi C Pierce; J Andrew McCammon; Senyon Choe
Journal:  Biochem Biophys Res Commun       Date:  2014-02-10       Impact factor: 3.575

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.