| Literature DB >> 22605977 |
Nahla Azzam1, Howaida Nounou2, Othman Alharbi1, Abedulrahman Aljebreen1, Manal Shalaby3.
Abstract
Crohn's disease (CD) is a multifactorial disease with a genetic component and an observed association with genes related to the innate immune response. Polymorphisms in the CARD15/NOD2 gene, in addition to functional variants of the toll-like receptor-4 (TLR4) and CD14 genes, have been associated with the development of Crohn's disease. There is no information about the frequency of these polymorphisms in the Saudi population. We examined the frequency of the three major CARD15/NOD2 risk alleles (Leu1007fsinsC, Arg702Trp, and Gly908Arg) and the TLR4 (Thr399Il) polymorphism as well as a functional polymorphism in the promoter of the CD14-159C/T in 46 Saudi CD patients and 50 matched controls. Genotyping was performed by allele-specific PCR or by restriction fragment length polymorphism (PCR-RFLP) analysis. The mutant genotype frequencies of the Leu1007fsinsC, Arg702Trp and Gly908Arg in the patient group were 6.5, 21.7 and 6.5%, respectively, compared with frequencies of 0, 4 and 2%, respectively, in the control group. There were 15 patients who carried the mutant alleles for all three CARD15/NOD2 variants, Leu1007fsinsC, Arg702Trp and Gly908Arg, while none of the control candidates carried the three alleles. This genetic study provides evidence that the three major CARD15/NOD2 variant alleles and the CD14 -159C/T polymorphism are associated with Crohn's disease (CD) susceptibility in the Saudi population; however, there is no evidence that the TLR4 (Thr399Il) or CARD15/NOD2 polymorphisms can be considered risk factors for Crohn's disease.Entities:
Keywords: CARD15/NOD2; Crohn’s disease; genetic polymorphism; inflammatory bowel disease
Mesh:
Substances:
Year: 2012 PMID: 22605977 PMCID: PMC3344213 DOI: 10.3390/ijms13044268
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Distribution of Chron’s disease (CD) patients according to demographic data.
| No. | % | |
|---|---|---|
| Male | 31 | 67.4 |
| Female | 15 | 32.6 |
| Range | 18.0–70.0 | |
| Mean ± SD | 30.43 ± 10.20 | |
| No | 39 | 84.8 |
| Yes | 7 | 15.2 |
| No | 37 | 80.4 |
| Yes | 9 | 19.6 |
| No not for surgery | 23 | 50.0 |
| Yes for surgery | 23 | 50.0 |
| Fistulizing | 22 | 47.8 |
| Fibrostenotic | 7 | 15.2 |
| Inflammatory | 16 | 34.8 |
| Fistulizing & Fibrostenotic | 1 | 2.2 |
| Abdominal pain | 38 | 86.4 |
| Anemia | 7 | 15.9 |
| Arthritis | 6 | 13.6 |
| Bleeding per rectum | 19 | 43.2 |
| Diarrhea | 33 | 75.0 |
| Eye disease | 3 | 6.8 |
| Fever | 10 | 22.7 |
| Perianal Disease | 16 | 36.4 |
| Skin lesions | 4 | 9.1 |
| Vomiting | 6 | 13.6 |
| Weight loss | 24 | 54.5 |
| 5-ASA | 23 | 51.1 |
| Adalimumab | 3 | 6.7 |
| Budesonide | 3 | 6.7 |
| Imuran | 35 | 77.8 |
| Infliximab | 28 | 62.2 |
| Steroid | 12 | 26.7 |
| Ileal | 10 | 21.7 |
| Ileocolonic | 27 | 58.7 |
| Colonic | 9 | 19.6 |
CARD15/NOD2 mutant allele frequencies in Saudi Crohn’s disease (CD) patients and controls.
| Homozygous wild-type | Homozygous mutant | Heterozygous mutant | Or (95% ci) mutant | Or (95% ci) hetero | |||
|---|---|---|---|---|---|---|---|
| Patients | 7 (15.2%) | 3 (6.5%) | 0.012 | 36 (78.3%) | <0.0001 | 5.29 (2.71–10.29) | 7.71 (2.87–20.71) |
| Controls | 30 (60.0%) | 0 (0.0%) | 20 (20.0%) | ||||
| Patients | 8 (17.4%) | 10 (21.7%) | <0.0001 | 28 (60.6%) | <0.0001 | 21.87 (3.99–119.9) | 9.42 (3.43–25.9) |
| Controls | 35 (70.0%) | 2 (4.0%) | 13 (26.0%) | ||||
| Patients | 5 (10.9%) | 3 (6.5%) | 0.015 | 38 (82.6%) | <0.0001 | 21.0 (1.81–243.2) | 19.0 (6.20–58.21) |
| Controls | 35 (70.0%) | 1 (2.0%) | 14 (28.0%) |
Statistically significant at P ≤ 0.05.
Allele and genotype frequencies for toll-like receptor-4 (TLR4) Thr399Ile and the CD14 −159C/T polymorphism in Saudi CD patients.
| Homozygous wild-type | Homozygous mutant | Heterozygous | Or (95% ci) mutant | Or (95% ci) hetero | |||
|---|---|---|---|---|---|---|---|
| Patients | 24 (52.2%) | 4 (8.7%) | 0.495 | 18 (39.1%) | 0.226 | 1.33 (0.30–5.88) | 1.71 (0.71–4.12) |
| Control | 32 (64.0%) | 4 (8.0%) | 14 (28.0) | ||||
| Patients | 13 (28.3%) | 7 (15.2%) | 0.075 | 26 (56.5%) | 0.002 | 3.23 (0.86–12.09) | 4.0 (1.61–9.93) |
| Control | 30 (60.0%) | 5 (10.0%) | 15 (30.0%) |
Statistically significant at P ≤ 0.05.
Comparison between Leu1007fsinsC, Arg702Trp, Gly908Arg, TLR4 Thr399Ile and CD14 −159C/T.
| Leu1007fsinsC | Arg702Trp | Gly908Arg | TLR4 Thr399Ile | CD14 −159C/T | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | % | No. | % | No. | % | No. | % | |
| Wild | 7 | 15.2 | 8 | 17.4 | 5 | 10.9 | 24 | 52.2 | 13 | 28.3 |
| Mutant | 3 | 6.5 | 10 | 21.7 | 3 | 77 | 4 | 8.7 | 7 | 15.2 |
| Hetero | 36 | 78.3 | 28 | 60.9 | 38 | 26 | 18 | 39.1 | 26 | 56.5 |
P1: P value between Leu1007fsinsC and each other mutation; P2: P value between Arg702Trp and each other mutation; P3: P value between Gly908Arg and each other mutation; P4: P value between TLR4 Thr399Ile and CD14 −159C/T.
Comparisons between the two groups studied according to combinations of mutations.
| Patients | Control | |||
|---|---|---|---|---|
| No. | % | No. | % | |
| None of the mutant alleles | 0 | 0.0 | 7 | 14.0 |
| 16 | 34.8 | 20 | 40.0 | |
| TLR4 Thr399Ile | 0 | 0.0 | 3 | 6.0 |
| CD14 −159C/T | 1 | 2.2 | 1 | 2.0 |
| 4 | 8.7 | 5 | 10.0 | |
| 11 | 23.9 | 8 | 16.0 | |
| TLR4 Thr399Ile/CD14 −159C/T | 0 | 0.0 | 2 | 4.0 |
| Thr399Ile/CD14 −159C/T | 14 | 30.4 | 4 | 8.0 |
Haplotypes analysis of CARD15/NOD2 polymorphism in Crohn’s disease patients and controls.
| Leu1007fsinsC | Arg702Trp | Gly908Arg | Number in patients/47 | Number in control/50 | 95% confidence intervals | ||
|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | 28 (59.57%) | 14 (28%) | 0.002 | 3.789 | 1.62–8.86 |
| 2 | 1 | 1 | 30 (63.82%) | 23 (46%) | 0.078 | 2.072 | 0.92–4.68 |
| 1 | 1 | 2 | 30 (63.8%) | 36 (72%) | 0.388 | 0.686 | 0.29–1.62 |
| 1 | 2 | 1 | 30 (63.8%) | 14 (28%) | 4.538 | 1.93–10.69 | |
| 1 | 2 | 2 | 32 (68.08%) | 12 (24%) | 6.756 | 2.77–16.49 | |
| 2 | 1 | 2 | 29 (61.70%) | 17 (34%) | 0.006 | 3.127 | 1.36–7.17 |
| 2 | 2 | 1 | 32 (68.08%) | 3 (6%) | 33.422 | 8.94–124.92 | |
| 2 | 2 | 2 | 31 (65.95%) | 2 (4%) | 46.50 | 9.99–216.42 |
1, wild-type; 2, mutant;
Odds ratio of disease status of each haplotype (1-1-1 reference haplotype);
P-value by chi square test.
Primers and polymerase chain reaction (PCR) conditions used for genotyping CARD15/NOD2, TLR4 and CD14 genes.
| Gene mutation | Primer name | Primer Sequence 5′-3′ | Cycling | Expected product |
|---|---|---|---|---|
| Leu1007fsinsCW TF, | CAGAAGCCCTCCTGCAGGCCCT | 35 cycles of: 94 °C for 45 s, 65 °C for 40 s, 72 °C for 30 s | +ve for wild | |
| Leu1007fsinsCR (common reverse) | TCTTCAACCACATCCCCATT | |||
| Leu1007fsinsCMUTF | CAGAAGCCCTCCTGCAGGCCCCT | +ve for mutant | ||
| Leu1007fsinsCR(common reverse) | TCTTCAACCACATCCCCATT | |||
| R702WWTF | ATCTGAGAAGGCCCTGCTCC | 35 cycles of: 94 °C for 45 s, 53 °C for 40 s, 72 °C for 30 s | +ve for wild | |
| R702WR, (common reverse) | CCCACACTTAGCCTTGATG | |||
| R702WMUTF | ATCTGAGAAGGCCCTGCTCT | +ve for mutant | ||
| R702WR,(common reverse) | CCCACACTTAGCCTTGATG | |||
| Gly908Arg F | CCCAGCTCCTCCCTCTTC | 35 cycles of: 94 °C for 45 s, 53 °C for 40 s, 72 °C for 30 s | For wild 380 bp fragment with | |
| Gly908Arg R | AAGTCTGTAATGTAAAGCCAC | |||
| TLR4 Thr399Ile | Thr399Ile FW | GGTTGCTGTTCTCAAAGTGATTTTGGGAGAA | 35 cycles of: 95 °C for 30 s, 55 °C for 30 s, 72 °C for 30 s | For wild 377 bp With |
| Thr399Ile R | CCTGAAGACTGGAGAGTGAGTTAAATGCT | |||
| CD14 −159C/T | CDP-1 | TTGGTGCCAACAGATGAGGTTCAC | 35 cycles of: 92 °C for 40 s, 62 °C for 35 s, 72 °C for 50 s. | For wild 204, 201 and 156 bp. With |
| CDP-2 | TTCTTTCCTACACAGCGGCACCC | |||