| Literature DB >> 34341249 |
Hassan Abdelnaby1, Ndeye Coumba Ndiaye2, Ferdinando D'Amico3, Ahmed Mahmoud Fouad4, Sameh Hassan5, Alaa Elshafey6, Wafaa Al Hashash5, Mohammed Faisal7, Yousef Alshamali8, Talal Al-Taweel8, Laurent Peyrin-Biroulet9.
Abstract
Background: Nucleotide-binding oligomerization domain-containing two (NOD2/CARD15) gene polymorphisms are implicated in the pathogenesis of Crohn's disease (CD). Aim: To describe the allelic frequency of NOD2/CARD15 gene variants among Kuwaiti patients with CD and investigate potential genotype/phenotype associations.Entities:
Keywords: Crohn's; Kuwait; NOD2/CARD15; polymorphisms
Mesh:
Substances:
Year: 2021 PMID: 34341249 PMCID: PMC8448012 DOI: 10.4103/sjg.sjg_613_20
Source DB: PubMed Journal: Saudi J Gastroenterol ISSN: 1319-3767 Impact factor: 2.485
PCR Primers for Amplification and Restriction Analysis of the NOD2/CARD15 Mutations and Polymorphisms[27]
| Polymorphisms | Restriction Enzyme | Forward Primer | Reverse Primer | Restriction Fragment Size (bp) | |
|---|---|---|---|---|---|
| Wild Type | Mutant | ||||
| R702W |
| CTTCCTGGCAGGGCTGTTGTC | CATGCACGCTCTTGGCCTCAC | 76+54+24+22 | 130+24+22 |
| G908R |
| AAGTCTGTAATGTAAAGCCAC | CCCAGCTCCTCCCTCTTC | 380 | 242+138 |
| 1007fs |
| CCTGCAGTCTCTTTAACTGG | CTTACCAGACTTCCAGGATG | 168 | 128+40 |
| P268S |
| TGCCTCTTCTTCTGCCTTCC b | AGTAGAGTCCGCACAGAGAG | 422 | 247+175 |
| IVS8+158 |
| TGCAGTTTTCTTGGGGAGAT | TGTACCTGATCCAGCCCAAT | 125+95 | 220 |
Demographic and Clinical characteristics of the studied population
| Variables | CD ( | HC ( |
|
|---|---|---|---|
| Gender (M/F) | 36/54 | 81/129 | 0.816 |
| Female (%) | (60%) | (61.4%) | |
| Age, Mean±SD (Range) | 31.9±10.5 (14-55) | 34.0±9.6 (18-55) | 0.103 |
| Smokers | 23 (25.6%) | 76 (36.2%) | 0.073 |
| Positive history in 1st degree relatives | 32 (35.6%) | - | |
| Age at diagnosis | |||
| <17 years | 13 (14.4%) | - | |
| 17-40 years | 65 (72.2%) | - | |
| >40 years | 12 (13.3%) | - | |
| Disease location | |||
| Ileum | 56 (62.2%) | - | |
| Colonic | 1 (1.1%) | - | |
| Ileo-colonic | 33 (36.7%) | - | |
| Upper disease | 0 | - | |
| Disease behavior | |||
| Non-stricturing, non-penetrating | 56 (62.2%) | - | |
| Penetrating | 8 (8.9%) | - | |
| Stricturing | 19 (21.1%) | - | |
| Perianal disease | 7 (7.8%) | - | |
| CD- related surgery | 17 (18.9%) | - | |
HC=Healthy control; CD=Crohn’s disease; M=male; F=female; N=number
NOD2/CARD15 Genotypes and minor allele frequencies of CD and control cases
| Genetic Variant | Study Group | Genotype, | HWE ( | MAF (%) | Minor Allele Carrier | Wald test ( | |||
|---|---|---|---|---|---|---|---|---|---|
| Wild type (-/-) | Heterozygous (-/+) | Homozygous mutant (+/+) |
| OR (95% CI) | |||||
| P286S | Control | 161 (76.7%) | 46 (21.9%) | 3 (1.4%) | 0.028 | 52 (12.4%) | 49 (23.3%) | 1 | 0.0065 |
| CD | 55 (61.1%) | 25 (27.8%) | 10 (11.1%) | 0.014 | 45 (25.0%) | 35 (38.9%) | 2.09 (1.23-3.56) | ||
| Total | 216 (72.0%) | 71 (24.0%) | 13 (4.0%) | 0.889 | 97 (16.2%) | 84 (28.0%) | |||
| IVS8+158 | Control | 166 (79%) | 44 (21.0%) | 0 | 0.042 | 44 (10.5%) | 44 (21.0%) | 1 | 0.975 |
| CD | 71 (78.9%) | 19 (21.1%) | 0 | 0.263 | 19 (10.6%) | 19 (21.1%) | 1.01 (0.55-1.85) | ||
| Total | 237 (79.0%) | 63 (21.0%) | 0 | 0.090 | 63 (10.5%) | 63 (21.0%) | |||
| G908R | Control | 204 (97.1%) | 6 (2.9%) | 0 | 0.614 | 6 (1.4%) | 6 (2.9%) | 1 | 0.0030 |
| CD | 79 (87.8%) | 11 (12.2%) | 0 | 0.537 | 11 (6.1%) | 11 (12.2%) | 4.73 (1.69-13.23) | ||
| Total | 283 (94.0%) | 17 (5.7%) | 0 | 0.834 | 17 (2.8%) | 17 (5.7%) | |||
| R702W | Control | 202 (96.2%) | 8 (3.8%) | 0 | 0.724 | 8 (1.9%) | 8 (3.8%) | 1 | 0.797 |
| CD | 86 (95.6%) | 4 (4.4%) | 0 | 0.829 | 4 (2.2%) | 4 (4.4%) | 1.17 (0.34-4.0) | ||
| Total | 288 (96.0%) | 12 (4.0%) | 0 | 0.778 | 12 (2.0%) | 12 (4.0%) | |||
HC=healthy controls; CD=Crohn’s disease; HWE=Hardy-Weinberg Equilibrium; MAF=Minor Allele Frequency. *Bonferroni’s corrected P (Statistically significant if <0.0063). HC=healthy controls; CD=Crohn’s disease; HWE=Hardy-Weinberg Equilibrium; MAF=Minor Allele Frequency. *Bonferroni’s corrected P (Statistically significant if <0.0063)
Demographic and clinical characteristics of CD patients according to NOD2/CARD15 genotype
| Variables | ||||||||
|---|---|---|---|---|---|---|---|---|
| P268S MA Carriers 35 (38.9%) | IVS8+158 MA Carriers 19 (21.1%) | G908R MA Carriers 11 (12.2%) | R702W MA Carriers 4 (4.4%) | |||||
| No. (%) | No. (%) | No. (%) | No. (%) | |||||
| Gender | ||||||||
| Male | 12 (34.3%) | 0.377 | 8 (42.1%) | 0.833 | 2 (18.2%) | 0.189 | 1 (25%) | 0.647 |
| Female | 23 (65.7%) | 11 (57.9%) | 9 (81.8%) | 3 (75%) | ||||
| Age: Mean±SD | 32.0±10.4 | 0.952 | 33.0±10.1 | 0.624 | 27.8±10.4 | 0.165 | 30.8±10.4 | 0.817 |
| Age at diagnosis | ||||||||
| <17 years | 7 (20%) | 0.332 | 1 (5.3%) | 0.386 | 5 (45.5%) | 0.013 | 1 (25%) | 0.735 |
| 17-40 years | 25 (71.4%) | 16 (84.2%) | 6 (54.5%) | 3 (75%) | ||||
| >40 years | 3 (8.6%) | 2 10.5%) | 0 | 0 | ||||
| Disease location | ||||||||
| Ileum | 22 (62.9%) | 1.00 | 10 (52.6%) | 0.448 | 8 (72.7%) | 0.772 | 3 (75%) | 1.00 |
| Ileo-colonic | 13 (37.1%) | 9 (47.4%) | 3 (27.3%) | 1 (25%) | ||||
| Disease behavior | ||||||||
| Non stricturing, non-penetrating | 17 (48.6%) | 0.012 | 8 (42.1%) | 0.116 | 3 (27.3%) | 0.019 | 3 (75%) | 0.455 |
| Penetrating | 7 (20%) | 2 (10.5%) | 3 (27.3%) | 1 (25%) | ||||
| Stricturing | 9 (25.7%) | 6 (31.6%) | 4 (36.4%) | 0 | ||||
| Perianal disease | 2 (5.7%) | 3 (15.8%) | 1 (9.1%) | 0 | ||||
| Surgery | 10 (28.6%) | 0.067 | 4 (21.1%) | 0.753 | 5 (45.5%) | 0.032 | 1 (25%) | 0.597 |
| Family History | 14 (40%) | 0.482 | 6 (31.6%) | 0.683 | 8 (72.7%) | 0.014 | 1 (25%) | 1.00 |
| Smokers | 10 (28.6%) | 0.601 | 7 (36.8%) | 0.241 | 3 (27.3%) | 1.00 | 1 (25%) | 1.00 |
CD=Crohn’s disease; N=number; MA=Minor allele. *Bonferroni’s corrected P (Statistically significant if <0.0063 for gender, disease location, surgery, family history, and smoking variables; <0.0042 for age at diagnosis variable; and <0.0031 for disease behavior variable)
Demographic and Clinical characteristics of CD patients according to the number of NOD2/CARD15 Polymorphisms
| Variables | Number of NOD2/CARD15 Polymorphisms |
| ||
|---|---|---|---|---|
| None No. (%) | Single Polymorphism No. (%) | Multiple Polymorphisms No. (%) | ||
| Gender | ||||
| Male | 20 (45.5%) | 10 (40.0%) | 6 (28.6%) | 0.430 |
| Female | 24 (54.5%) | 15 (60.0%) | 15 (71.4%) | |
| Age: Mean±SD | 31.7±11.0 | 33.4±9.7 | 30.9±10.7 | 0.817 |
| Age at diagnosis | ||||
| <17 years | 5 (11.4%) | 3 (12.0%) | 5 (23.8%) | 0.493 |
| 17-40 years | 31 (70.5%) | 19 (76.0%) | 15 (71.4%) | |
| >40 years | 8 (18.2%) | 3 (12.0%) | 1 (4.8%) | |
| Disease location: | ||||
| Ileum | 28 (63.6%) | 14 (56.0%) | 14 (66.7%) | 0.876 |
| Colon | 1 (2.3%) | 0 | 0 | |
| Ileo-colonic | 15 (34.1%) | 11 (44.0%) | 7 (33.3%) | |
| Disease behavior: | ||||
| Non stricturing, non-penetrating | 33 (75.0%) | 16 (64.0%) | 7 (33.3%) | 0.025* |
| Penetrating | 1 (2.3%) | 2 (8.0%) | 5 (23.8%) | |
| Stricturing | 7 (15.9%) | 5 (20.0% | 7 (33.3%) | |
| Perianal disease | 3 (6.8%) | 2 (8.0%) | 2 (9.5%) | |
| IBD- related surgery | 6 (14.0%) | 3 (12.0%) | 8 (38.1%) | 0.065 |
| Family History | 14 (31.8%) | 8 (32.0%) | 10 (47.6%) | 0.419 |
| Smokers | 10 (22.7%) | 6 (24.0%) | 7 (33.3%) | 0.634 |
CD=Crohn’s disease; M=male; F=female; No.= number. *Statistically significant P (<0.05)