Literature DB >> 24940255

1-(4-Chloro-butano-yl)-3-(3-chloro-phen-yl)thio-urea.

Hamza M Abosadiya1, Siti Aishah Hasbullah1, Bohari M Yamin2, Adibatul H Fadzil3.   

Abstract

The two independent mol-ecules in the asymmetric unit of the title compound, C11H12Cl2N2OS, exhibit different conformations, with the benzene ring and the N2CS thio-urea group forming dihedral angles of 87.40 (18) and 69.42 (15)°. An intra-molecular N-H⋯O hydrogen bond is present in each mol-ecule. Two further N-H⋯O hydrogen bonds link the independent mol-ecules into a dimer. In the crystal, the dimers are linked by N-H⋯S and C-H⋯S hydrogen bonds, forming chains parallel to the c axis.

Entities:  

Year:  2014        PMID: 24940255      PMCID: PMC4051110          DOI: 10.1107/S1600536814009295

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications and biological activities of thio­urea derivatives, see: Abbas et al. (2013 ▶). For the crystal structure of a related compound, see: Yusof et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12Cl2N2OS M = 291.19 Monoclinic, a = 14.7762 (8) Å b = 10.9400 (6) Å c = 17.8153 (10) Å β = 111.327 (2)° V = 2682.7 (3) Å3 Z = 8 Mo Kα radiation μ = 0.62 mm−1 T = 296 K 0.41 × 0.35 × 0.30 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.784, T max = 0.835 49874 measured reflections 4987 independent reflections 3897 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.162 S = 1.05 4987 reflections 323 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.51 e Å−3 Δρmin = −0.83 e Å−3 Data collection: SMART (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814009295/rz5121sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814009295/rz5121Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814009295/rz5121Isup3.cml CCDC reference: 999317 Additional supporting information: crystallographic information; 3D view; checkCIF report
C11H12Cl2N2OSF(000) = 1200
Mr = 291.19Dx = 1.442 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9934 reflections
a = 14.7762 (8) Åθ = 2.9–25.5°
b = 10.9400 (6) ŵ = 0.62 mm1
c = 17.8153 (10) ÅT = 296 K
β = 111.327 (2)°Block, colourless
V = 2682.7 (3) Å30.41 × 0.35 × 0.30 mm
Z = 8
Bruker SMART APEX CCD area-detector diffractometer4987 independent reflections
Radiation source: fine-focus sealed tube3897 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 2.9°
ω scanh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→13
Tmin = 0.784, Tmax = 0.835l = −21→21
49874 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0699P)2 + 5.078P] where P = (Fo2 + 2Fc2)/3
4987 reflections(Δ/σ)max = 0.001
323 parametersΔρmax = 1.51 e Å3
4 restraintsΔρmin = −0.83 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.20900 (11)0.68433 (14)0.71321 (7)0.0842 (4)
Cl20.53415 (11)1.04818 (15)0.11355 (8)0.0871 (4)
Cl30.47334 (9)0.68932 (12)0.00986 (9)0.0842 (4)
Cl41.26802 (10)0.33013 (12)0.45687 (9)0.0839 (4)
S10.75626 (6)1.01805 (8)0.46585 (5)0.0406 (2)
S21.01747 (6)0.48468 (9)0.16368 (5)0.0397 (2)
O10.92224 (18)0.6927 (2)0.42275 (15)0.0509 (7)
O20.79236 (17)0.6402 (3)0.25577 (15)0.0571 (8)
N10.90164 (18)0.8658 (3)0.48549 (16)0.0327 (6)
N20.7673 (2)0.8405 (3)0.36889 (17)0.0400 (7)
N30.84653 (19)0.5491 (3)0.16566 (16)0.0355 (6)
N40.97653 (19)0.5835 (3)0.28377 (17)0.0405 (7)
C11.1947 (3)0.6227 (4)0.6168 (2)0.0580 (11)
H1A1.23530.66830.59440.070*
H1B1.21670.53850.62330.070*
C21.0906 (3)0.6275 (3)0.5587 (2)0.0433 (8)
H2A1.08630.58910.50840.052*
H2B1.05020.58120.58090.052*
C31.0526 (2)0.7563 (3)0.5420 (2)0.0429 (8)
H3A1.05060.79130.59140.051*
H3B1.09740.80460.52580.051*
C40.9534 (2)0.7651 (3)0.4779 (2)0.0362 (7)
C50.8088 (2)0.9018 (3)0.43661 (18)0.0325 (7)
C60.6695 (3)0.8650 (4)0.3146 (2)0.0428 (9)
C70.6542 (3)0.9400 (4)0.2506 (2)0.0484 (9)
H70.70550.97860.24170.058*
C80.5567 (3)0.9572 (4)0.1977 (2)0.0543 (10)
C90.4823 (3)0.9004 (5)0.2106 (3)0.0635 (12)
H90.41900.91260.17490.076*
C100.4990 (3)0.8265 (5)0.2745 (3)0.0674 (13)
H100.44750.78820.28320.081*
C110.5940 (3)0.8079 (4)0.3275 (2)0.0567 (11)
H110.60620.75660.37170.068*
C120.4953 (3)0.6064 (5)0.1009 (3)0.0606 (11)
H12A0.45010.63340.12560.073*
H12B0.48380.52010.08850.073*
C130.5976 (2)0.6237 (4)0.1596 (2)0.0523 (10)
H13A0.61070.71060.16740.063*
H13B0.60270.58910.21110.063*
C140.6733 (2)0.5662 (3)0.1331 (2)0.0383 (8)
H14A0.66240.47870.12780.046*
H14B0.66680.59810.08060.046*
C150.7744 (2)0.5901 (3)0.1911 (2)0.0376 (8)
C160.9453 (2)0.5431 (3)0.20854 (18)0.0310 (7)
C171.0758 (2)0.5800 (3)0.33715 (18)0.0330 (7)
C181.1187 (2)0.4690 (3)0.3653 (2)0.0385 (8)
H181.08500.39610.34810.046*
C191.2132 (3)0.4690 (3)0.4198 (2)0.0414 (8)
C201.2647 (2)0.5753 (4)0.4454 (2)0.0473 (9)
H201.32860.57320.48160.057*
C211.2201 (3)0.6843 (4)0.4166 (3)0.0521 (10)
H211.25390.75710.43360.062*
C221.1247 (3)0.6873 (3)0.3621 (2)0.0426 (8)
H221.09450.76150.34290.051*
H10.923 (2)0.912 (3)0.5285 (13)0.033 (9)*
H30.826 (2)0.521 (3)0.1164 (9)0.030 (9)*
H40.933 (2)0.609 (3)0.303 (2)0.043 (10)*
H20.801 (3)0.779 (3)0.360 (2)0.053 (12)*
U11U22U33U12U13U23
Cl10.0966 (10)0.0931 (9)0.0404 (6)0.0185 (8)−0.0019 (6)−0.0008 (6)
Cl20.0826 (9)0.1067 (11)0.0642 (7)0.0309 (8)0.0174 (7)0.0311 (7)
Cl30.0508 (6)0.0749 (8)0.0930 (9)0.0089 (6)−0.0142 (6)0.0095 (7)
Cl40.0744 (8)0.0630 (7)0.0882 (9)0.0298 (6)−0.0016 (7)0.0157 (6)
S10.0343 (4)0.0466 (5)0.0349 (4)0.0111 (4)0.0057 (3)−0.0043 (4)
S20.0316 (4)0.0535 (5)0.0337 (4)0.0046 (4)0.0116 (3)−0.0006 (4)
O10.0388 (14)0.0542 (16)0.0470 (15)0.0099 (12)0.0005 (12)−0.0182 (13)
O20.0313 (13)0.087 (2)0.0415 (14)0.0122 (13)−0.0002 (11)−0.0240 (14)
N10.0259 (13)0.0376 (15)0.0301 (14)0.0035 (11)0.0048 (11)−0.0062 (12)
N20.0285 (14)0.0493 (18)0.0343 (15)0.0103 (13)0.0018 (12)−0.0088 (13)
N30.0247 (13)0.0504 (17)0.0265 (14)0.0015 (12)0.0036 (11)−0.0055 (12)
N40.0257 (14)0.0582 (19)0.0324 (15)0.0087 (13)0.0042 (12)−0.0090 (13)
C10.048 (2)0.070 (3)0.046 (2)0.022 (2)0.0051 (18)0.001 (2)
C20.0375 (19)0.047 (2)0.0403 (19)0.0074 (16)0.0084 (15)−0.0009 (16)
C30.0273 (16)0.045 (2)0.047 (2)0.0056 (15)0.0021 (15)−0.0064 (16)
C40.0287 (16)0.0417 (19)0.0355 (17)0.0030 (14)0.0086 (14)−0.0005 (15)
C50.0275 (15)0.0380 (17)0.0305 (16)0.0012 (13)0.0087 (13)0.0049 (14)
C60.0376 (19)0.051 (2)0.0306 (17)0.0129 (16)0.0015 (14)−0.0097 (16)
C70.046 (2)0.055 (2)0.039 (2)0.0085 (18)0.0091 (16)−0.0054 (17)
C80.056 (2)0.059 (2)0.040 (2)0.016 (2)0.0090 (18)0.0009 (18)
C90.037 (2)0.084 (3)0.059 (3)0.010 (2)0.0051 (19)−0.007 (2)
C100.034 (2)0.097 (4)0.062 (3)−0.001 (2)0.007 (2)−0.005 (3)
C110.038 (2)0.077 (3)0.047 (2)0.001 (2)0.0051 (17)−0.003 (2)
C120.0295 (19)0.080 (3)0.068 (3)−0.0057 (19)0.0134 (19)−0.016 (2)
C130.0291 (18)0.075 (3)0.051 (2)−0.0026 (18)0.0115 (16)−0.015 (2)
C140.0277 (16)0.046 (2)0.0366 (18)0.0010 (14)0.0056 (14)−0.0046 (15)
C150.0281 (16)0.0451 (19)0.0349 (18)0.0054 (14)0.0058 (14)−0.0021 (15)
C160.0264 (15)0.0327 (16)0.0300 (16)0.0016 (12)0.0055 (13)0.0039 (13)
C170.0257 (15)0.0437 (19)0.0269 (15)0.0046 (14)0.0065 (13)−0.0032 (14)
C180.0343 (17)0.0391 (18)0.0373 (18)−0.0011 (14)0.0073 (14)−0.0051 (15)
C190.0353 (18)0.048 (2)0.0374 (18)0.0128 (16)0.0088 (15)0.0022 (16)
C200.0242 (16)0.069 (3)0.042 (2)0.0025 (17)0.0035 (14)−0.0063 (18)
C210.037 (2)0.050 (2)0.061 (2)−0.0093 (17)0.0092 (18)−0.0112 (19)
C220.0369 (18)0.0385 (19)0.047 (2)0.0044 (15)0.0084 (16)0.0034 (16)
Cl1—C11.784 (4)C6—C71.357 (5)
Cl2—C81.728 (4)C6—C111.369 (6)
Cl3—C121.782 (5)C7—C81.418 (5)
Cl4—C191.736 (4)C7—H70.9300
S1—C51.669 (3)C8—C91.354 (6)
S2—C161.674 (3)C9—C101.343 (7)
O1—C41.215 (4)C9—H90.9300
O2—C151.215 (4)C10—C111.393 (6)
N1—C41.376 (4)C10—H100.9300
N1—C51.388 (4)C11—H110.9300
N1—H10.876 (10)C12—C131.504 (5)
N2—C51.321 (4)C12—H12A0.9700
N2—C61.441 (4)C12—H12B0.9700
N2—H20.876 (10)C13—C141.502 (5)
N3—C151.376 (4)C13—H13A0.9700
N3—C161.381 (4)C13—H13B0.9700
N3—H30.872 (10)C14—C151.497 (4)
N4—C161.325 (4)C14—H14A0.9700
N4—C171.429 (4)C14—H14B0.9700
N4—H40.874 (10)C17—C221.365 (5)
C1—C21.511 (5)C17—C181.378 (5)
C1—H1A0.9700C18—C191.381 (5)
C1—H1B0.9700C18—H180.9300
C2—C31.506 (5)C19—C201.373 (5)
C2—H2A0.9700C20—C211.369 (6)
C2—H2B0.9700C20—H200.9300
C3—C41.499 (4)C21—C221.391 (5)
C3—H3A0.9700C21—H210.9300
C3—H3B0.9700C22—H220.9300
C4—N1—C5128.6 (3)C9—C10—C11119.5 (4)
C4—N1—H1121 (2)C9—C10—H10120.3
C5—N1—H1110 (2)C11—C10—H10120.3
C5—N2—C6122.5 (3)C6—C11—C10120.1 (4)
C5—N2—H2116 (3)C6—C11—H11120.0
C6—N2—H2121 (3)C10—C11—H11120.0
C15—N3—C16128.5 (3)C13—C12—Cl3111.9 (3)
C15—N3—H3115 (2)C13—C12—H12A109.2
C16—N3—H3117 (2)Cl3—C12—H12A109.2
C16—N4—C17124.0 (3)C13—C12—H12B109.2
C16—N4—H4118 (2)Cl3—C12—H12B109.2
C17—N4—H4118 (2)H12A—C12—H12B107.9
C2—C1—Cl1112.4 (3)C14—C13—C12113.8 (3)
C2—C1—H1A109.1C14—C13—H13A108.8
Cl1—C1—H1A109.1C12—C13—H13A108.8
C2—C1—H1B109.1C14—C13—H13B108.8
Cl1—C1—H1B109.1C12—C13—H13B108.8
H1A—C1—H1B107.9H13A—C13—H13B107.7
C3—C2—C1112.4 (3)C15—C14—C13112.4 (3)
C3—C2—H2A109.1C15—C14—H14A109.1
C1—C2—H2A109.1C13—C14—H14A109.1
C3—C2—H2B109.1C15—C14—H14B109.1
C1—C2—H2B109.1C13—C14—H14B109.1
H2A—C2—H2B107.9H14A—C14—H14B107.9
C4—C3—C2113.7 (3)O2—C15—N3122.0 (3)
C4—C3—H3A108.8O2—C15—C14123.5 (3)
C2—C3—H3A108.8N3—C15—C14114.4 (3)
C4—C3—H3B108.8N4—C16—N3116.9 (3)
C2—C3—H3B108.8N4—C16—S2124.2 (2)
H3A—C3—H3B107.7N3—C16—S2118.8 (2)
O1—C4—N1122.8 (3)C22—C17—C18121.4 (3)
O1—C4—C3123.5 (3)C22—C17—N4119.2 (3)
N1—C4—C3113.7 (3)C18—C17—N4119.4 (3)
N2—C5—N1117.0 (3)C17—C18—C19118.0 (3)
N2—C5—S1123.9 (2)C17—C18—H18121.0
N1—C5—S1119.1 (2)C19—C18—H18121.0
C7—C6—C11121.4 (3)C20—C19—C18122.1 (3)
C7—C6—N2119.8 (4)C20—C19—Cl4119.3 (3)
C11—C6—N2118.8 (3)C18—C19—Cl4118.7 (3)
C6—C7—C8117.2 (4)C21—C20—C19118.7 (3)
C6—C7—H7121.4C21—C20—H20120.7
C8—C7—H7121.4C19—C20—H20120.7
C9—C8—C7121.2 (4)C20—C21—C22120.6 (4)
C9—C8—Cl2120.0 (3)C20—C21—H21119.7
C7—C8—Cl2118.8 (4)C22—C21—H21119.7
C10—C9—C8120.7 (4)C17—C22—C21119.3 (3)
C10—C9—H9119.7C17—C22—H22120.3
C8—C9—H9119.7C21—C22—H22120.3
Cl1—C1—C2—C361.8 (4)Cl3—C12—C13—C14−68.4 (5)
C1—C2—C3—C4173.7 (3)C12—C13—C14—C15177.4 (4)
C5—N1—C4—O11.6 (6)C16—N3—C15—O28.2 (6)
C5—N1—C4—C3179.5 (3)C16—N3—C15—C14−171.1 (3)
C2—C3—C4—O1−28.8 (5)C13—C14—C15—O26.6 (5)
C2—C3—C4—N1153.3 (3)C13—C14—C15—N3−174.1 (3)
C6—N2—C5—N1177.1 (3)C17—N4—C16—N3177.8 (3)
C6—N2—C5—S1−2.8 (5)C17—N4—C16—S2−1.4 (5)
C4—N1—C5—N2−8.1 (5)C15—N3—C16—N4−1.2 (5)
C4—N1—C5—S1171.8 (3)C15—N3—C16—S2178.0 (3)
C5—N2—C6—C795.8 (4)C16—N4—C17—C22113.8 (4)
C5—N2—C6—C11−86.6 (5)C16—N4—C17—C18−69.3 (5)
C11—C6—C7—C80.2 (6)C22—C17—C18—C190.0 (5)
N2—C6—C7—C8177.8 (3)N4—C17—C18—C19−176.9 (3)
C6—C7—C8—C9−0.3 (6)C17—C18—C19—C20−0.8 (5)
C6—C7—C8—Cl2−178.0 (3)C17—C18—C19—Cl4179.3 (3)
C7—C8—C9—C100.4 (7)C18—C19—C20—C211.0 (6)
Cl2—C8—C9—C10178.0 (4)Cl4—C19—C20—C21−179.1 (3)
C8—C9—C10—C11−0.4 (7)C19—C20—C21—C22−0.4 (6)
C7—C6—C11—C10−0.2 (6)C18—C17—C22—C210.5 (5)
N2—C6—C11—C10−177.8 (4)N4—C17—C22—C21177.4 (3)
C9—C10—C11—C60.3 (7)C20—C21—C22—C17−0.3 (6)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.89 (4)1.97 (4)2.679 (4)136 (3)
N2—H2···O20.89 (4)2.37 (3)3.089 (4)139 (3)
N4—H4···O10.88 (3)2.38 (3)3.106 (4)140 (3)
N4—H4···O20.88 (3)1.97 (3)2.656 (4)134 (3)
C3—H3A···Cl10.972.803.184 (4)104
N1—H1···S2i0.88 (3)2.57 (2)3.425 (3)167 (3)
N3—H3···S1ii0.87 (2)2.54 (2)3.397 (3)169 (3)
C3—H3B···S1iii0.972.873.792 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O10.89 (4)1.97 (4)2.679 (4)136 (3)
N2—H2⋯O20.89 (4)2.37 (3)3.089 (4)139 (3)
N4—H4⋯O10.88 (3)2.38 (3)3.106 (4)140 (3)
N4—H4⋯O20.88 (3)1.97 (3)2.656 (4)134 (3)
N1—H1⋯S2i 0.88 (3)2.57 (2)3.425 (3)167 (3)
N3—H3⋯S1ii 0.87 (2)2.54 (2)3.397 (3)169 (3)
C3—H3B⋯S1iii 0.972.873.792 (3)160

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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