Literature DB >> 22590018

N-Cyclo-pentyl-N-(3-oxo-2,3-dihydro-1H-inden-1-yl)acetamide.

Tao Zhang, Tom McCabe, Bartosz Marzec, Neil Frankish, Helen Sheridan.   

Abstract

The title mol-ecule, C(16)H(19)NO(2), consists of an indane moiety, which is connected through an N atom to an acetamide group and a cyclo-pentane ring. The N atom adopts planar triangular geometry. Inter-molecular inter-actions, such as π-π stacking or hydrogen bonding, were not observed.

Entities:  

Year:  2012        PMID: 22590018      PMCID: PMC3343937          DOI: 10.1107/S160053681200606X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the indane pharmacophore, see: Vaccva et al. (1994 ▶); Buckle et al. (1973 ▶); Heinzelmann et al. (1940 ▶). For details of the pharmacological activity of the title compound, see: Sheridan et al. (1990 ▶, 1999a ▶,b ▶, 2008 ▶); Frankish et al. (2004 ▶). For ionization characteristics, see: Simplício et al. (2004 ▶).

Experimental

Crystal data

C16H19NO2 M = 257.32 Triclinic, a = 8.1539 (16) Å b = 8.9944 (18) Å c = 10.084 (2) Å α = 87.97 (3)° β = 81.29 (3)° γ = 63.15 (3)° V = 651.8 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.60 × 0.50 × 0.30 mm

Data collection

Rigaku Saturn 724 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2006 ▶) T min = 0.726, T max = 1.000 7260 measured reflections 2191 independent reflections 2157 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.100 S = 1.13 2191 reflections 174 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200606X/hg5169sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200606X/hg5169Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200606X/hg5169Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19NO2Z = 2
Mr = 257.32F(000) = 276
Triclinic, P1Dx = 1.311 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1539 (16) ÅCell parameters from 2546 reflections
b = 8.9944 (18) Åθ = 2.0–31.2°
c = 10.084 (2) ŵ = 0.09 mm1
α = 87.97 (3)°T = 150 K
β = 81.29 (3)°Prism, colourless
γ = 63.15 (3)°0.60 × 0.50 × 0.30 mm
V = 651.8 (2) Å3
Rigaku Saturn 724 diffractometer2191 independent reflections
Radiation source: fine-focus sealed tube2157 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 2.8°
ω and phi scansh = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2006)k = −10→8
Tmin = 0.726, Tmax = 1.000l = −11→11
7260 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0406P)2 + 0.3106P] where P = (Fo2 + 2Fc2)/3
2191 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
Experimental. The su's on the Cell Angles were measured.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.31603 (15)0.52993 (14)0.35282 (11)0.0247 (3)
N10.26193 (16)0.31399 (15)0.30730 (12)0.0180 (3)
C120.3026 (2)0.13741 (18)0.31299 (14)0.0178 (3)
H120.40750.08120.36270.021*
C50.15437 (19)0.51234 (18)0.12014 (14)0.0178 (3)
C90.10493 (19)0.42530 (18)0.24012 (14)0.0182 (3)
H90.05350.35660.20710.022*
C60.0277 (2)0.67950 (19)0.12237 (14)0.0188 (3)
C100.3582 (2)0.38022 (19)0.36131 (14)0.0191 (3)
C40.2976 (2)0.4435 (2)0.01256 (15)0.0221 (3)
H40.38210.33110.00950.027*
C7−0.1091 (2)0.72363 (19)0.24640 (15)0.0199 (3)
C110.5168 (2)0.2668 (2)0.43334 (16)0.0245 (4)
H11A0.57110.33010.46690.037*
H11B0.60920.17990.37200.037*
H11C0.47090.21820.50690.037*
C10.0406 (2)0.7826 (2)0.01944 (15)0.0226 (3)
H1−0.04540.89450.02190.027*
C160.1404 (2)0.10622 (19)0.38594 (15)0.0222 (3)
H16A0.15170.08630.48010.027*
H16B0.02180.20160.37930.027*
C130.3576 (2)0.04558 (19)0.17613 (14)0.0205 (3)
H13A0.27630.11180.11320.025*
H13B0.48520.01750.13860.025*
C30.3120 (2)0.5459 (2)−0.09033 (15)0.0245 (4)
H30.40790.5014−0.16240.029*
C140.3337 (2)−0.11046 (19)0.21048 (15)0.0227 (3)
H14A0.4397−0.19270.24820.027*
H14B0.3200−0.15950.13130.027*
C20.1849 (2)0.7143 (2)−0.08713 (15)0.0251 (4)
H20.19690.7811−0.15660.030*
C8−0.0572 (2)0.56929 (19)0.32894 (15)0.0223 (3)
H8A−0.16240.54510.35170.027*
H8B−0.01810.58490.41130.027*
C150.1556 (2)−0.04907 (19)0.31440 (16)0.0242 (4)
H15A0.1640−0.13460.37820.029*
H15B0.0478−0.02060.27040.029*
O1−0.24001 (15)0.85977 (14)0.27869 (11)0.0280 (3)
U11U22U33U12U13U23
O20.0310 (6)0.0181 (7)0.0266 (6)−0.0122 (5)−0.0055 (5)0.0010 (4)
N10.0186 (6)0.0145 (7)0.0187 (6)−0.0058 (5)−0.0023 (5)0.0003 (5)
C120.0196 (7)0.0130 (8)0.0187 (7)−0.0058 (6)−0.0016 (6)0.0001 (6)
C50.0174 (7)0.0187 (8)0.0181 (7)−0.0083 (6)−0.0052 (5)0.0009 (6)
C90.0168 (7)0.0159 (8)0.0192 (7)−0.0055 (6)−0.0011 (5)−0.0003 (6)
C60.0187 (7)0.0180 (8)0.0213 (7)−0.0083 (6)−0.0072 (6)0.0007 (6)
C100.0206 (7)0.0199 (9)0.0154 (7)−0.0089 (6)0.0008 (5)−0.0016 (6)
C40.0209 (7)0.0201 (9)0.0225 (8)−0.0071 (6)−0.0021 (6)−0.0006 (6)
C70.0164 (7)0.0190 (9)0.0235 (8)−0.0063 (6)−0.0054 (6)−0.0029 (6)
C110.0248 (8)0.0229 (9)0.0271 (8)−0.0108 (7)−0.0072 (6)−0.0002 (6)
C10.0235 (8)0.0192 (8)0.0266 (8)−0.0096 (6)−0.0092 (6)0.0030 (6)
C160.0236 (8)0.0196 (9)0.0212 (7)−0.0092 (7)0.0017 (6)−0.0008 (6)
C130.0188 (7)0.0199 (9)0.0192 (7)−0.0061 (6)−0.0007 (6)−0.0021 (6)
C30.0239 (8)0.0313 (10)0.0192 (8)−0.0136 (7)−0.0019 (6)0.0000 (6)
C140.0220 (8)0.0186 (9)0.0255 (8)−0.0071 (7)−0.0032 (6)−0.0044 (6)
C20.0306 (8)0.0299 (10)0.0211 (8)−0.0181 (8)−0.0091 (6)0.0079 (6)
C80.0189 (7)0.0206 (9)0.0218 (8)−0.0051 (6)0.0008 (6)−0.0015 (6)
C150.0235 (8)0.0183 (9)0.0304 (8)−0.0098 (7)−0.0010 (6)−0.0012 (6)
O10.0219 (6)0.0211 (7)0.0327 (6)−0.0026 (5)−0.0025 (5)−0.0031 (5)
O2—C101.2334 (19)C11—H11B0.9600
N1—C101.3571 (19)C11—H11C0.9600
N1—C91.4687 (19)C1—C21.389 (2)
N1—C121.470 (2)C1—H10.9300
C12—C131.532 (2)C16—C151.541 (2)
C12—C161.548 (2)C16—H16A0.9700
C12—H120.9800C16—H16B0.9700
C5—C61.386 (2)C13—C141.523 (2)
C5—C41.391 (2)C13—H13A0.9700
C5—C91.520 (2)C13—H13B0.9700
C9—C81.551 (2)C3—C21.394 (2)
C9—H90.9800C3—H30.9300
C6—C11.391 (2)C14—C151.539 (2)
C6—C71.476 (2)C14—H14A0.9700
C10—C111.511 (2)C14—H14B0.9700
C4—C31.390 (2)C2—H20.9300
C4—H40.9300C8—H8A0.9700
C7—O11.2196 (19)C8—H8B0.9700
C7—C81.514 (2)C15—H15A0.9700
C11—H11A0.9600C15—H15B0.9700
C10—N1—C9118.39 (12)C6—C1—H1120.8
C10—N1—C12124.30 (12)C15—C16—C12105.69 (12)
C9—N1—C12117.30 (12)C15—C16—H16A110.6
N1—C12—C13114.87 (12)C12—C16—H16A110.6
N1—C12—C16114.41 (12)C15—C16—H16B110.6
C13—C12—C16105.21 (12)C12—C16—H16B110.6
N1—C12—H12107.3H16A—C16—H16B108.7
C13—C12—H12107.3C14—C13—C12102.50 (12)
C16—C12—H12107.3C14—C13—H13A111.3
C6—C5—C4120.02 (14)C12—C13—H13A111.3
C6—C5—C9111.41 (13)C14—C13—H13B111.3
C4—C5—C9128.47 (14)C12—C13—H13B111.3
N1—C9—C5115.14 (12)H13A—C13—H13B109.2
N1—C9—C8115.99 (12)C4—C3—C2120.98 (15)
C5—C9—C8103.95 (12)C4—C3—H3119.5
N1—C9—H9107.1C2—C3—H3119.5
C5—C9—H9107.1C13—C14—C15104.59 (12)
C8—C9—H9107.1C13—C14—H14A110.8
C5—C6—C1121.56 (14)C15—C14—H14A110.8
C5—C6—C7110.07 (13)C13—C14—H14B110.8
C1—C6—C7128.36 (14)C15—C14—H14B110.8
O2—C10—N1120.77 (14)H14A—C14—H14B108.9
O2—C10—C11120.75 (13)C1—C2—C3120.27 (15)
N1—C10—C11118.48 (13)C1—C2—H2119.9
C3—C4—C5118.77 (15)C3—C2—H2119.9
C3—C4—H4120.6C7—C8—C9106.08 (12)
C5—C4—H4120.6C7—C8—H8A110.5
O1—C7—C6126.77 (15)C9—C8—H8A110.5
O1—C7—C8125.44 (14)C7—C8—H8B110.5
C6—C7—C8107.79 (13)C9—C8—H8B110.5
C10—C11—H11A109.5H8A—C8—H8B108.7
C10—C11—H11B109.5C14—C15—C16105.85 (12)
H11A—C11—H11B109.5C14—C15—H15A110.6
C10—C11—H11C109.5C16—C15—H15A110.6
H11A—C11—H11C109.5C14—C15—H15B110.6
H11B—C11—H11C109.5C16—C15—H15B110.6
C2—C1—C6118.40 (15)H15A—C15—H15B108.7
C2—C1—H1120.8
C10—N1—C12—C13−118.48 (15)C9—C5—C4—C3176.96 (14)
C9—N1—C12—C1362.40 (16)C5—C6—C7—O1−179.07 (14)
C10—N1—C12—C16119.67 (15)C1—C6—C7—O12.3 (2)
C9—N1—C12—C16−59.45 (16)C5—C6—C7—C81.59 (16)
C10—N1—C9—C560.63 (17)C1—C6—C7—C8−177.04 (14)
C12—N1—C9—C5−120.20 (14)C5—C6—C1—C2−0.1 (2)
C10—N1—C9—C8−61.05 (17)C7—C6—C1—C2178.36 (14)
C12—N1—C9—C8118.12 (14)N1—C12—C16—C15147.25 (12)
C6—C5—C9—N1−135.65 (13)C13—C12—C16—C1520.25 (16)
C4—C5—C9—N148.1 (2)N1—C12—C13—C14−163.79 (12)
C6—C5—C9—C8−7.66 (16)C16—C12—C13—C14−37.07 (15)
C4—C5—C9—C8176.08 (14)C5—C4—C3—C2−0.6 (2)
C4—C5—C6—C1−0.7 (2)C12—C13—C14—C1539.78 (15)
C9—C5—C6—C1−177.28 (13)C6—C1—C2—C30.6 (2)
C4—C5—C6—C7−179.41 (12)C4—C3—C2—C1−0.2 (2)
C9—C5—C6—C73.98 (16)O1—C7—C8—C9174.40 (14)
C9—N1—C10—O2−0.8 (2)C6—C7—C8—C9−6.25 (16)
C12—N1—C10—O2−179.91 (12)N1—C9—C8—C7135.64 (13)
C9—N1—C10—C11178.57 (12)C5—C9—C8—C78.18 (15)
C12—N1—C10—C11−0.5 (2)C13—C14—C15—C16−27.47 (16)
C6—C5—C4—C31.0 (2)C12—C16—C15—C144.32 (16)
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