Literature DB >> 22589998

4-[5-Amino-4-(4-fluoro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-1-yl]benzo-nitrile.

Bassam Abu Thaher, Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the crystal structure of the title compound, C(21)H(14)FN(5), the pyrazole ring forms dihedral angles of 38.0 (1), 40.0 (1) and 28.5 (1)° with the directly attached 4-fluoro-phenyl, pyridine and benzonitrile rings, respectively. The crystal packing is characterized by N-H⋯N hydrogen bonds, which result in a two-dimensional network parallel to the ac-plane.

Entities:  

Year:  2012        PMID: 22589998      PMCID: PMC3343917          DOI: 10.1107/S160053681200877X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For p38α MAP kinase inhibitors having a vicinal 4-fluoro­phen­yl/pyridin-4-yl system connected to a five-membered heterocyclic core, see: Abu Thaher et al. (2009 ▶); Peifer et al. (2006 ▶). For the inhibitory activity and preparation of the title compound, see: Abu Thaher et al. (2012a ▶). For related structures, see: Abu Thaher et al. (2012b ▶,c ▶).

Experimental

Crystal data

C21H14FN5 M = 355.37 Orthorhombic, a = 10.5189 (5) Å b = 8.1339 (3) Å c = 20.0009 (13) Å V = 1711.27 (15) Å3 Z = 4 Cu Kα radiation μ = 0.76 mm−1 T = 193 K 0.50 × 0.30 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3163 measured reflections 3059 independent reflections 3005 reflections with I > 2σ(I) R int = 0.026 3 standard reflections every 60 min intensity decay: 3%

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.04 3059 reflections 244 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1381 Friedel pairs Flack parameter: −0.17 (18) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200877X/im2359sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200877X/im2359Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200877X/im2359Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H14FN5F(000) = 736
Mr = 355.37Dx = 1.379 Mg m3
Orthorhombic, Pca21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2c -2acCell parameters from 25 reflections
a = 10.5189 (5) Åθ = 65–70°
b = 8.1339 (3) ŵ = 0.76 mm1
c = 20.0009 (13) ÅT = 193 K
V = 1711.27 (15) Å3Block, brown
Z = 40.50 × 0.30 × 0.30 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.026
Radiation source: rotating anodeθmax = 69.9°, θmin = 4.4°
Graphite monochromatorh = −12→12
ω/2θ scansk = −9→9
3163 measured reflectionsl = −24→24
3059 independent reflections3 standard reflections every 60 min
3005 reflections with I > 2σ(I) intensity decay: 3%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0752P)2 + 0.2913P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3059 reflectionsΔρmax = 0.17 e Å3
244 parametersΔρmin = −0.23 e Å3
1 restraintAbsolute structure: Flack (1983), 1381 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.17 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.43666 (14)0.21998 (19)0.52903 (8)0.0245 (3)
C20.46323 (15)0.2397 (2)0.46188 (10)0.0233 (4)
C30.34814 (17)0.2656 (2)0.43004 (10)0.0234 (4)
C40.25715 (16)0.2607 (2)0.48226 (9)0.0236 (4)
N50.30861 (14)0.23527 (19)0.54156 (8)0.0253 (3)
N60.58360 (15)0.2377 (2)0.43736 (9)0.0322 (4)
H6A0.64920.25470.46390.048*
H6B0.59750.24250.39490.048*
C70.51679 (16)0.1880 (2)0.58436 (10)0.0240 (4)
C80.47853 (17)0.2416 (3)0.64701 (11)0.0307 (4)
H80.40140.30130.65160.037*
C90.55154 (18)0.2090 (3)0.70281 (10)0.0319 (4)
H90.52450.24460.74570.038*
C100.66595 (17)0.1229 (2)0.69545 (9)0.0269 (4)
C110.70398 (19)0.0686 (2)0.63280 (10)0.0309 (4)
H110.78160.01020.62810.037*
C120.62949 (18)0.0992 (2)0.57720 (10)0.0287 (4)
H120.65480.06000.53450.034*
C130.74546 (19)0.0933 (2)0.75280 (11)0.0306 (4)
N140.81025 (18)0.0714 (3)0.79805 (10)0.0402 (4)
C160.33007 (16)0.3156 (2)0.35985 (9)0.0235 (4)
C170.24094 (18)0.4368 (2)0.34404 (10)0.0279 (4)
H170.19150.48430.37880.033*
C180.22306 (19)0.4892 (2)0.27863 (11)0.0315 (4)
H180.16050.56930.26810.038*
C190.29837 (19)0.4220 (3)0.22958 (9)0.0303 (4)
C200.38681 (19)0.3029 (3)0.24196 (10)0.0329 (4)
H200.43690.25850.20680.039*
C210.40156 (19)0.2480 (3)0.30763 (10)0.0294 (4)
H210.46110.16340.31700.035*
F220.28240 (13)0.47710 (18)0.16555 (6)0.0439 (3)
C230.11619 (16)0.2723 (2)0.47901 (10)0.0247 (4)
C240.04902 (17)0.3515 (3)0.52898 (10)0.0301 (4)
H240.09270.40430.56460.036*
C25−0.08274 (18)0.3532 (3)0.52667 (11)0.0357 (5)
H25−0.12730.40930.56110.043*
N26−0.15029 (15)0.2799 (2)0.47859 (10)0.0370 (4)
C27−0.08439 (19)0.2038 (3)0.43060 (12)0.0362 (5)
H27−0.13060.15110.39590.043*
C280.04695 (18)0.1972 (3)0.42836 (11)0.0301 (4)
H280.08910.14220.39280.036*
U11U22U33U12U13U23
N10.0145 (6)0.0350 (8)0.0241 (8)−0.0011 (6)0.0004 (6)0.0023 (7)
C20.0160 (8)0.0292 (9)0.0246 (10)−0.0018 (6)0.0001 (7)−0.0011 (7)
C30.0177 (8)0.0267 (8)0.0259 (9)−0.0007 (6)0.0000 (7)−0.0014 (8)
C40.0149 (8)0.0299 (8)0.0259 (9)−0.0019 (6)−0.0023 (7)0.0007 (7)
N50.0128 (7)0.0366 (8)0.0265 (9)0.0008 (5)−0.0004 (6)0.0013 (7)
N60.0119 (7)0.0586 (11)0.0260 (8)−0.0022 (7)0.0012 (6)−0.0019 (8)
C70.0164 (8)0.0288 (9)0.0268 (9)−0.0026 (7)−0.0035 (7)0.0019 (8)
C80.0175 (8)0.0447 (11)0.0298 (10)0.0032 (7)0.0008 (8)−0.0026 (9)
C90.0228 (9)0.0469 (11)0.0261 (10)−0.0006 (8)−0.0003 (7)−0.0042 (9)
C100.0224 (8)0.0318 (9)0.0265 (10)−0.0038 (7)−0.0041 (7)0.0022 (8)
C110.0252 (9)0.0357 (10)0.0320 (10)0.0068 (8)−0.0031 (8)−0.0003 (9)
C120.0254 (9)0.0363 (9)0.0244 (9)0.0042 (8)0.0003 (7)−0.0028 (8)
C130.0260 (8)0.0365 (10)0.0291 (9)−0.0040 (8)−0.0014 (8)0.0014 (8)
N140.0332 (9)0.0541 (11)0.0333 (9)−0.0074 (8)−0.0090 (8)0.0054 (9)
C160.0172 (7)0.0292 (9)0.0241 (9)−0.0039 (7)−0.0008 (6)−0.0019 (7)
C170.0248 (9)0.0328 (9)0.0261 (10)−0.0002 (7)0.0017 (7)−0.0024 (8)
C180.0297 (10)0.0336 (10)0.0314 (10)−0.0008 (8)−0.0043 (8)0.0041 (8)
C190.0300 (9)0.0406 (10)0.0202 (9)−0.0136 (8)−0.0034 (7)0.0013 (8)
C200.0277 (9)0.0456 (11)0.0254 (10)−0.0079 (8)0.0058 (8)−0.0078 (9)
C210.0202 (9)0.0367 (10)0.0313 (10)−0.0014 (7)0.0004 (8)−0.0033 (8)
F220.0503 (8)0.0578 (8)0.0236 (6)−0.0142 (6)−0.0051 (5)0.0065 (6)
C230.0156 (8)0.0316 (9)0.0268 (9)0.0008 (6)0.0006 (7)0.0040 (7)
C240.0205 (8)0.0449 (11)0.0250 (9)0.0002 (7)−0.0024 (7)−0.0022 (9)
C250.0213 (9)0.0538 (12)0.0318 (10)0.0055 (8)0.0055 (8)−0.0036 (9)
N260.0160 (7)0.0569 (11)0.0382 (10)−0.0002 (7)0.0001 (7)0.0016 (9)
C270.0206 (9)0.0542 (12)0.0337 (11)−0.0049 (8)−0.0040 (8)−0.0026 (10)
C280.0210 (8)0.0428 (11)0.0265 (9)−0.0017 (7)−0.0020 (8)−0.0022 (9)
N1—N51.376 (2)C13—N141.147 (3)
N1—C21.381 (3)C16—C171.397 (3)
N1—C71.415 (2)C16—C211.399 (3)
C2—N61.358 (2)C17—C181.389 (3)
C2—C31.384 (2)C17—H170.9500
C3—C41.417 (3)C18—C191.374 (3)
C3—C161.474 (3)C18—H180.9500
C4—N51.320 (2)C19—C201.366 (3)
C4—C231.487 (2)C19—F221.367 (2)
N6—H6A0.8816C20—C211.396 (3)
N6—H6B0.8621C20—H200.9500
C7—C81.386 (3)C21—H210.9500
C7—C121.395 (3)C23—C241.383 (3)
C8—C91.380 (3)C23—C281.389 (3)
C8—H80.9500C24—C251.387 (3)
C9—C101.400 (3)C24—H240.9500
C9—H90.9500C25—N261.336 (3)
C10—C111.388 (3)C25—H250.9500
C10—C131.440 (3)N26—C271.336 (3)
C11—C121.383 (3)C27—C281.383 (3)
C11—H110.9500C27—H270.9500
C12—H120.9500C28—H280.9500
N5—N1—C2111.40 (14)C17—C16—C21117.97 (18)
N5—N1—C7117.21 (15)C17—C16—C3119.80 (17)
C2—N1—C7131.39 (15)C21—C16—C3122.22 (17)
N6—C2—N1122.58 (16)C18—C17—C16121.39 (18)
N6—C2—C3130.64 (18)C18—C17—H17119.3
N1—C2—C3106.74 (15)C16—C17—H17119.3
C2—C3—C4104.33 (17)C19—C18—C17118.20 (18)
C2—C3—C16126.37 (16)C19—C18—H18120.9
C4—C3—C16128.50 (17)C17—C18—H18120.9
N5—C4—C3112.93 (16)C20—C19—F22119.08 (19)
N5—C4—C23117.26 (16)C20—C19—C18123.03 (18)
C3—C4—C23129.75 (18)F22—C19—C18117.90 (18)
C4—N5—N1104.59 (15)C19—C20—C21118.24 (19)
C2—N6—H6A120.7C19—C20—H20120.9
C2—N6—H6B120.9C21—C20—H20120.9
H6A—N6—H6B117.0C20—C21—C16121.13 (19)
C8—C7—C12120.14 (18)C20—C21—H21119.4
C8—C7—N1118.43 (16)C16—C21—H21119.4
C12—C7—N1121.39 (18)C24—C23—C28117.64 (16)
C9—C8—C7120.58 (17)C24—C23—C4120.48 (17)
C9—C8—H8119.7C28—C23—C4121.79 (17)
C7—C8—H8119.7C23—C24—C25119.40 (18)
C8—C9—C10119.30 (19)C23—C24—H24120.3
C8—C9—H9120.4C25—C24—H24120.3
C10—C9—H9120.4N26—C25—C24123.45 (19)
C11—C10—C9120.12 (18)N26—C25—H25118.3
C11—C10—C13119.92 (17)C24—C25—H25118.3
C9—C10—C13119.95 (18)C27—N26—C25116.60 (16)
C12—C11—C10120.38 (18)N26—C27—C28124.0 (2)
C12—C11—H11119.8N26—C27—H27118.0
C10—C11—H11119.8C28—C27—H27118.0
C11—C12—C7119.46 (19)C27—C28—C23118.87 (19)
C11—C12—H12120.3C27—C28—H28120.6
C7—C12—H12120.3C23—C28—H28120.6
N14—C13—C10178.9 (2)
N5—N1—C2—N6176.84 (17)C8—C7—C12—C11−1.5 (3)
C7—N1—C2—N6−3.2 (3)N1—C7—C12—C11−179.04 (17)
N5—N1—C2—C3−1.1 (2)C2—C3—C16—C17−136.16 (19)
C7—N1—C2—C3178.89 (17)C4—C3—C16—C1732.0 (3)
N6—C2—C3—C4−177.24 (19)C2—C3—C16—C2142.5 (3)
N1—C2—C3—C40.45 (19)C4—C3—C16—C21−149.42 (18)
N6—C2—C3—C16−6.8 (3)C21—C16—C17—C180.1 (3)
N1—C2—C3—C16170.87 (17)C3—C16—C17—C18178.76 (17)
C2—C3—C4—N50.3 (2)C16—C17—C18—C19−1.9 (3)
C16—C3—C4—N5−169.81 (17)C17—C18—C19—C202.1 (3)
C2—C3—C4—C23−176.61 (17)C17—C18—C19—F22−178.44 (16)
C16—C3—C4—C2313.2 (3)F22—C19—C20—C21−179.87 (17)
C3—C4—N5—N1−0.97 (19)C18—C19—C20—C21−0.4 (3)
C23—C4—N5—N1176.39 (15)C19—C20—C21—C16−1.5 (3)
C2—N1—N5—C41.26 (19)C17—C16—C21—C201.7 (3)
C7—N1—N5—C4−178.71 (15)C3—C16—C21—C20−176.99 (18)
N5—N1—C7—C8−27.3 (2)N5—C4—C23—C2438.6 (3)
C2—N1—C7—C8152.71 (19)C3—C4—C23—C24−144.6 (2)
N5—N1—C7—C12150.24 (17)N5—C4—C23—C28−137.84 (19)
C2—N1—C7—C12−29.7 (3)C3—C4—C23—C2839.0 (3)
C12—C7—C8—C90.5 (3)C28—C23—C24—C250.0 (3)
N1—C7—C8—C9178.05 (18)C4—C23—C24—C25−176.60 (18)
C7—C8—C9—C100.9 (3)C23—C24—C25—N260.8 (3)
C8—C9—C10—C11−1.1 (3)C24—C25—N26—C27−0.8 (3)
C8—C9—C10—C13177.70 (19)C25—N26—C27—C280.1 (3)
C9—C10—C11—C120.1 (3)N26—C27—C28—C230.6 (4)
C13—C10—C11—C12−178.77 (19)C24—C23—C28—C27−0.6 (3)
C10—C11—C12—C71.3 (3)C4—C23—C28—C27175.92 (19)
D—H···AD—HH···AD···AD—H···A
N6—H6A···N26i0.882.142.938 (2)150
N6—H6B···N14ii0.862.583.292 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6A⋯N26i0.882.142.938 (2)150
N6—H6B⋯N14ii0.862.583.292 (3)141

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tri- and tetrasubstituted pyrazole derivates: regioisomerism switches activity from p38MAP kinase to important cancer kinases.

Authors:  Bassam Abu Thaher; Martina Arnsmann; Frank Totzke; Jan E Ehlert; Michael H G Kubbutat; Christoph Schächtele; Markus O Zimmermann; Pierre Koch; Frank M Boeckler; Stefan A Laufer
Journal:  J Med Chem       Date:  2012-01-17       Impact factor: 7.446

Review 3.  New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase.

Authors:  Christian Peifer; Gerd Wagner; Stefan Laufer
Journal:  Curr Top Med Chem       Date:  2006       Impact factor: 3.295

4.  Role of the hydrogen bonding heteroatom-Lys53 interaction between the p38alpha mitogen-activated protein (MAP) kinase and pyridinyl-substituted 5-membered heterocyclic ring inhibitors.

Authors:  Bassam Abu Thaher; Pierre Koch; Verena Schattel; Stefan Laufer
Journal:  J Med Chem       Date:  2009-04-23       Impact factor: 7.446

5.  4-(4-Fluoro-phen-yl)-1-(4-nitro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

6.  4-(4-Fluoro-phen-yl)-1-phenyl-3-(pyridin-4-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  4-(4-Fluoro-phen-yl)-3-(pyridin-4-yl)-1-(2,4,6-trichloro-phen-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-01
  1 in total

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