Literature DB >> 22412537

4-(4-Fluoro-phen-yl)-1-phenyl-3-(pyridin-4-yl)-1H-pyrazol-5-amine.

Bassam Abu Thaher, Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the title compound, C(20)H(15)FN(4), the n class="Chemical">pyrazole ring forms dihedral angles of 43.51 (6), 39.95 (6) and 32.23 (6)° with the directly attached 4-fluoro-phenyl, pyridine and phenyl rings, respectively. The crystal packing is stabilized by inter-molecular N-H⋯N and N-H⋯F hydrogen bonds.

Entities:  

Year:  2012        PMID: 22412537      PMCID: PMC3295426          DOI: 10.1107/S1600536812004096

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For p38α MAP kinase inhibitors having a vicinal 4-fluoro­phen­yl/pyridin-4-yl system connected to a five-membered heterocyclic core, see: Abu Thaher et al. (2009 ▶); Peifer et al. (2006 ▶). For inhibitory activity and preparation of the title compound, see: Abu Thaher et al. (2012 ▶).

Experimental

Crystal data

C20H15FN4 M = 330.36 Monoclinic, a = 12.2408 (3) Å b = 10.4427 (2) Å c = 12.9099 (3) Å β = 101.951 (1)° V = 1614.46 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 193 K 0.39 × 0.38 × 0.24 mm

Data collection

Bruker SMART CCD diffractometer 29688 measured reflections 5459 independent reflections 3972 reflections with I > 2σ(I) R int = 0.092

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.139 S = 1.07 5459 reflections 226 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004096/bt5808sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004096/bt5808Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004096/bt5808Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15FN4F(000) = 688
Mr = 330.36Dx = 1.359 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8198 reflections
a = 12.2408 (3) Åθ = 2.5–31°
b = 10.4427 (2) ŵ = 0.09 mm1
c = 12.9099 (3) ÅT = 193 K
β = 101.951 (1)°Plate, colourless
V = 1614.46 (6) Å30.39 × 0.38 × 0.24 mm
Z = 4
Bruker SMART CCD diffractometer3972 reflections with I > 2σ(I)
Radiation source: sealed TubeRint = 0.092
Graphite monochromatorθmax = 31.7°, θmin = 2.1°
CCD scanh = −17→18
29688 measured reflectionsk = −15→15
5459 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0759P)2] where P = (Fo2 + 2Fc2)/3
5459 reflections(Δ/σ)max = 0.001
226 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.42742 (8)0.43838 (8)0.21818 (7)0.01963 (19)
N20.42901 (8)0.56672 (8)0.24356 (7)0.0203 (2)
C30.38505 (9)0.62463 (9)0.15232 (8)0.0186 (2)
C40.35487 (9)0.53683 (9)0.06717 (8)0.0188 (2)
C50.38251 (9)0.41737 (9)0.11336 (8)0.0196 (2)
C60.47171 (9)0.34914 (9)0.29983 (8)0.0200 (2)
C70.52687 (9)0.23961 (10)0.27749 (9)0.0253 (2)
H70.53490.22240.20720.030*
C80.57028 (11)0.15549 (11)0.35910 (10)0.0310 (3)
H80.60580.07890.34400.037*
C90.56218 (11)0.18236 (11)0.46214 (10)0.0323 (3)
H90.59230.12450.51750.039*
C100.50995 (10)0.29421 (12)0.48467 (9)0.0290 (3)
H100.50670.31430.55570.035*
C110.46249 (10)0.37644 (10)0.40313 (9)0.0243 (2)
H110.42390.45100.41790.029*
C120.37406 (8)0.76535 (9)0.15138 (8)0.0193 (2)
C130.34059 (10)0.82967 (10)0.23403 (9)0.0235 (2)
H130.32490.78330.29260.028*
C140.33030 (10)0.96196 (10)0.23020 (10)0.0276 (3)
H140.30881.00420.28800.033*
N150.34895 (9)1.03314 (9)0.14963 (8)0.0298 (2)
C160.38196 (11)0.97073 (11)0.07086 (10)0.0299 (3)
H160.39641.01960.01310.036*
C170.39641 (10)0.83907 (10)0.06831 (9)0.0258 (2)
H170.42110.79990.01080.031*
C180.30291 (9)0.56329 (9)−0.04437 (8)0.0193 (2)
C190.21579 (9)0.65213 (10)−0.06991 (9)0.0238 (2)
H190.18740.6914−0.01460.029*
C200.17003 (10)0.68406 (11)−0.17433 (9)0.0273 (3)
H200.11190.7456−0.19100.033*
C210.21154 (10)0.62388 (11)−0.25283 (9)0.0276 (3)
C220.29435 (10)0.53254 (11)−0.23223 (9)0.0269 (2)
H220.31940.4908−0.28840.032*
C230.34046 (9)0.50288 (10)−0.12725 (9)0.0229 (2)
H230.39820.4408−0.11160.027*
F240.16930 (7)0.65754 (7)−0.35554 (6)0.0425 (2)
N250.37049 (9)0.29779 (8)0.06845 (7)0.0264 (2)
H25A0.36020.23350.10590.040*
H25B0.33070.30080.00530.040*
U11U22U33U12U13U23
N10.0270 (5)0.0128 (4)0.0171 (4)0.0019 (3)−0.0001 (3)−0.0001 (3)
N20.0273 (5)0.0125 (4)0.0195 (4)0.0005 (3)0.0010 (3)−0.0006 (3)
C30.0216 (5)0.0137 (4)0.0197 (5)0.0004 (4)0.0024 (4)−0.0001 (3)
C40.0219 (5)0.0147 (4)0.0184 (5)0.0008 (4)0.0010 (4)0.0006 (3)
C50.0238 (5)0.0150 (4)0.0186 (5)0.0005 (4)0.0014 (4)−0.0006 (3)
C60.0232 (5)0.0149 (4)0.0195 (5)0.0000 (4)−0.0008 (4)0.0032 (3)
C70.0293 (6)0.0213 (5)0.0230 (5)0.0043 (4)0.0002 (4)0.0003 (4)
C80.0342 (6)0.0212 (5)0.0335 (7)0.0082 (5)−0.0024 (5)0.0023 (4)
C90.0372 (7)0.0264 (6)0.0282 (6)0.0021 (5)−0.0047 (5)0.0098 (5)
C100.0357 (6)0.0289 (6)0.0205 (5)−0.0018 (5)0.0016 (5)0.0048 (4)
C110.0298 (6)0.0203 (5)0.0218 (5)0.0016 (4)0.0035 (4)0.0013 (4)
C120.0206 (5)0.0135 (4)0.0216 (5)0.0005 (4)−0.0008 (4)0.0000 (3)
C130.0293 (6)0.0169 (4)0.0234 (5)0.0018 (4)0.0038 (4)0.0008 (4)
C140.0329 (6)0.0178 (5)0.0314 (6)0.0025 (4)0.0054 (5)−0.0033 (4)
N150.0364 (6)0.0164 (4)0.0342 (6)0.0003 (4)0.0018 (4)0.0003 (4)
C160.0412 (7)0.0171 (5)0.0303 (6)−0.0028 (5)0.0047 (5)0.0056 (4)
C170.0360 (6)0.0181 (5)0.0232 (6)−0.0016 (4)0.0063 (5)0.0003 (4)
C180.0214 (5)0.0152 (4)0.0196 (5)−0.0018 (4)0.0002 (4)0.0008 (3)
C190.0253 (5)0.0203 (5)0.0235 (5)0.0024 (4)0.0002 (4)−0.0003 (4)
C200.0276 (6)0.0222 (5)0.0276 (6)0.0018 (4)−0.0044 (5)0.0035 (4)
C210.0331 (6)0.0269 (5)0.0187 (5)−0.0057 (5)−0.0044 (4)0.0045 (4)
C220.0326 (6)0.0280 (5)0.0196 (5)−0.0029 (5)0.0042 (4)−0.0011 (4)
C230.0244 (5)0.0203 (5)0.0230 (5)0.0010 (4)0.0031 (4)0.0003 (4)
F240.0545 (5)0.0467 (5)0.0197 (4)−0.0003 (4)−0.0078 (3)0.0087 (3)
N250.0409 (6)0.0144 (4)0.0202 (5)−0.0002 (4)−0.0025 (4)−0.0008 (3)
N1—C51.3687 (13)C13—C141.3871 (14)
N1—N21.3789 (11)C13—H130.9500
N1—C61.4272 (13)C14—N151.3360 (16)
N2—C31.3342 (13)C14—H140.9500
C3—C41.4202 (13)N15—C161.3389 (17)
C3—C121.4755 (13)C16—C171.3875 (15)
C4—C51.3938 (13)C16—H160.9500
C4—C181.4748 (13)C17—H170.9500
C5—N251.3718 (12)C18—C231.3992 (15)
C6—C71.3885 (15)C18—C191.4004 (14)
C6—C111.3910 (16)C19—C201.3891 (15)
C7—C81.3900 (15)C19—H190.9500
C7—H70.9500C20—C211.3760 (17)
C8—C91.3830 (19)C20—H200.9500
C8—H80.9500C21—F241.3658 (12)
C9—C101.3909 (17)C21—C221.3771 (17)
C9—H90.9500C22—C231.3909 (15)
C10—C111.3891 (15)C22—H220.9500
C10—H100.9500C23—H230.9500
C11—H110.9500N25—H25A0.8520
C12—C131.3924 (15)N25—H25B0.8591
C12—C171.3925 (15)
C5—N1—N2111.95 (8)C14—C13—C12119.48 (11)
C5—N1—C6129.72 (8)C14—C13—H13120.3
N2—N1—C6118.33 (8)C12—C13—H13120.3
C3—N2—N1104.32 (8)N15—C14—C13123.58 (11)
N2—C3—C4112.55 (9)N15—C14—H14118.2
N2—C3—C12118.56 (9)C13—C14—H14118.2
C4—C3—C12128.89 (9)C14—N15—C16116.59 (10)
C5—C4—C3104.21 (9)N15—C16—C17124.09 (11)
C5—C4—C18127.07 (9)N15—C16—H16118.0
C3—C4—C18128.70 (9)C17—C16—H16118.0
N1—C5—N25123.35 (9)C16—C17—C12118.90 (11)
N1—C5—C4106.96 (8)C16—C17—H17120.6
N25—C5—C4129.69 (10)C12—C17—H17120.6
C7—C6—C11120.49 (10)C23—C18—C19118.25 (10)
C7—C6—N1120.74 (10)C23—C18—C4121.24 (9)
C11—C6—N1118.72 (9)C19—C18—C4120.50 (10)
C6—C7—C8119.29 (11)C20—C19—C18121.46 (11)
C6—C7—H7120.4C20—C19—H19119.3
C8—C7—H7120.4C18—C19—H19119.3
C9—C8—C7120.56 (11)C21—C20—C19117.96 (10)
C9—C8—H8119.7C21—C20—H20121.0
C7—C8—H8119.7C19—C20—H20121.0
C8—C9—C10119.94 (10)F24—C21—C20118.31 (11)
C8—C9—H9120.0F24—C21—C22118.77 (11)
C10—C9—H9120.0C20—C21—C22122.92 (10)
C11—C10—C9119.93 (11)C21—C22—C23118.44 (11)
C11—C10—H10120.0C21—C22—H22120.8
C9—C10—H10120.0C23—C22—H22120.8
C10—C11—C6119.71 (11)C22—C23—C18120.90 (10)
C10—C11—H11120.1C22—C23—H23119.6
C6—C11—H11120.1C18—C23—H23119.6
C13—C12—C17117.35 (9)C5—N25—H25A119.6
C13—C12—C3121.00 (9)C5—N25—H25B111.0
C17—C12—C3121.66 (10)H25A—N25—H25B116.5
C5—N1—N2—C3−0.46 (12)N1—C6—C11—C10−176.75 (10)
C6—N1—N2—C3178.81 (9)N2—C3—C12—C13−40.18 (15)
N1—N2—C3—C4−0.21 (12)C4—C3—C12—C13139.92 (12)
N1—N2—C3—C12179.88 (9)N2—C3—C12—C17139.91 (11)
N2—C3—C4—C50.76 (13)C4—C3—C12—C17−39.99 (17)
C12—C3—C4—C5−179.34 (11)C17—C12—C13—C140.40 (16)
N2—C3—C4—C18179.05 (10)C3—C12—C13—C14−179.51 (10)
C12—C3—C4—C18−1.05 (19)C12—C13—C14—N151.25 (18)
N2—N1—C5—N25−179.34 (10)C13—C14—N15—C16−1.73 (18)
C6—N1—C5—N251.49 (18)C14—N15—C16—C170.61 (18)
N2—N1—C5—C40.95 (13)N15—C16—C17—C120.97 (19)
C6—N1—C5—C4−178.22 (11)C13—C12—C17—C16−1.43 (16)
C3—C4—C5—N1−0.99 (12)C3—C12—C17—C16178.48 (10)
C18—C4—C5—N1−179.31 (10)C5—C4—C18—C23−45.51 (16)
C3—C4—C5—N25179.33 (12)C3—C4—C18—C23136.58 (12)
C18—C4—C5—N251.0 (2)C5—C4—C18—C19135.85 (12)
C5—N1—C6—C733.57 (17)C3—C4—C18—C19−42.06 (16)
N2—N1—C6—C7−145.55 (10)C23—C18—C19—C20−2.48 (16)
C5—N1—C6—C11−148.95 (11)C4—C18—C19—C20176.19 (10)
N2—N1—C6—C1131.93 (15)C18—C19—C20—C211.16 (17)
C11—C6—C7—C81.73 (17)C19—C20—C21—F24−178.07 (10)
N1—C6—C7—C8179.17 (10)C19—C20—C21—C221.21 (18)
C6—C7—C8—C9−2.19 (18)F24—C21—C22—C23177.17 (10)
C7—C8—C9—C100.18 (19)C20—C21—C22—C23−2.11 (18)
C8—C9—C10—C112.31 (19)C21—C22—C23—C180.67 (17)
C9—C10—C11—C6−2.76 (18)C19—C18—C23—C221.54 (16)
C7—C6—C11—C100.74 (17)C4—C18—C23—C22−177.13 (10)
D—H···AD—HH···AD···AD—H···A
N25—H25A···N15i0.852.182.9866 (13)158
N25—H25B···F24ii0.862.443.0631 (11)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N25—H25A⋯N15i0.852.182.9866 (13)158
N25—H25B⋯F24ii0.862.443.0631 (11)130

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tri- and tetrasubstituted pyrazole derivates: regioisomerism switches activity from p38MAP kinase to important cancer kinases.

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4.  Role of the hydrogen bonding heteroatom-Lys53 interaction between the p38alpha mitogen-activated protein (MAP) kinase and pyridinyl-substituted 5-membered heterocyclic ring inhibitors.

Authors:  Bassam Abu Thaher; Pierre Koch; Verena Schattel; Stefan Laufer
Journal:  J Med Chem       Date:  2009-04-23       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  Ethyl 5-amino-3-(pyridin-4-yl)-1-(2,4,6-tri-chloro-phen-yl)-1H-pyrazole-4-carb-oxyl-ate dimethyl sulfoxide hemisolvate.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

2.  4-(4-Fluoro-phen-yl)-3-(pyridin-4-yl)-1-(2,4,6-trichloro-phen-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-01

3.  4-[5-Amino-4-(4-fluoro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-1-yl]benzo-nitrile.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  3 in total

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