Literature DB >> 22412538

4-(4-Fluoro-phen-yl)-1-(4-nitro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-5-amine.

Bassam Abu Thaher, Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the crystal structure of the title compound, C(20)H(14)FN(5)O(2), the pyrazole ring forms dihedral angles of 59.3 (2), 25.6 (2) and 46.0 (2)° with the directly attached 4-fluoro-phenyl, pyridine and nitro-phenyl rings, respectively. The crystal packing is characterized by inter-molecular N-H⋯N and N-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22412538      PMCID: PMC3295427          DOI: 10.1107/S1600536812004102

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For p38α MAP kinase inhibitors having a vicinal 4-fluoro­phen­yl/pyridin-4-yl system connected to a five-membered heterocyclic core, see: Abu Thaher et al. (2009 ▶); Peifer et al. (2006 ▶). For inhibitory activity and preparation of the title compound, see: Abu Thaher et al. (2012 ▶).

Experimental

Crystal data

C20H14FN5O2 M = 375.36 Triclinic, a = 8.5088 (14) Å b = 9.8797 (11) Å c = 10.4264 (14) Å α = 79.906 (10)° β = 78.764 (10)° γ = 86.245 (9)° V = 845.9 (2) Å3 Z = 2 Cu Kα radiation μ = 0.89 mm−1 T = 193 K 0.35 × 0.35 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3416 measured reflections 3185 independent reflections 2835 reflections with I > 2σ(I) R int = 0.020 3 standard reflections every 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.247 S = 1.18 3185 reflections 254 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.73 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004102/bt5809sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004102/bt5809Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004102/bt5809Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14FN5O2Z = 2
Mr = 375.36F(000) = 388
Triclinic, P1Dx = 1.474 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 8.5088 (14) ÅCell parameters from 25 reflections
b = 9.8797 (11) Åθ = 65–69°
c = 10.4264 (14) ŵ = 0.89 mm1
α = 79.906 (10)°T = 193 K
β = 78.764 (10)°Block, brown
γ = 86.245 (9)°0.35 × 0.35 × 0.20 mm
V = 845.9 (2) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.020
Radiation source: rotating anodeθmax = 69.8°, θmin = 4.4°
Graphite monochromatorh = −10→0
ω/2θ scansk = −12→12
3416 measured reflectionsl = −12→12
3185 independent reflections3 standard reflections every 60 min
2835 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.070H-atom parameters constrained
wR(F2) = 0.247w = 1/[σ2(Fo2) + (0.1328P)2 + 1.0029P] where P = (Fo2 + 2Fc2)/3
S = 1.18(Δ/σ)max < 0.001
3185 reflectionsΔρmax = 0.49 e Å3
254 parametersΔρmin = −0.73 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.056 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2765 (3)0.5908 (2)0.7116 (2)0.0313 (6)
C20.2170 (4)0.4635 (3)0.7619 (3)0.0296 (7)
C30.2085 (4)0.4005 (3)0.6544 (3)0.0303 (7)
C40.2649 (4)0.5007 (3)0.5421 (3)0.0309 (7)
N50.3086 (3)0.6147 (3)0.5750 (2)0.0325 (6)
N60.1761 (3)0.4154 (3)0.8957 (2)0.0339 (6)
H6A0.16660.32310.91810.051*
H6B0.23820.44420.94200.051*
C70.3021 (4)0.6985 (3)0.7779 (3)0.0306 (7)
C80.4406 (4)0.7722 (3)0.7327 (3)0.0385 (8)
H80.52220.74310.66610.046*
C90.4599 (4)0.8882 (3)0.7848 (3)0.0407 (8)
H90.55460.93940.75560.049*
C100.3373 (4)0.9277 (3)0.8805 (3)0.0365 (8)
C110.2029 (4)0.8520 (3)0.9310 (3)0.0369 (7)
H110.12300.88020.99920.044*
C120.1854 (4)0.7340 (3)0.8809 (3)0.0338 (7)
H120.09520.67830.91630.041*
N130.3484 (4)1.0589 (3)0.9244 (3)0.0436 (7)
O140.2312 (4)1.1002 (2)0.9998 (3)0.0565 (8)
O150.4705 (4)1.1239 (3)0.8826 (3)0.0571 (8)
C160.1488 (4)0.2617 (3)0.6615 (3)0.0322 (7)
C170.2460 (5)0.1614 (3)0.6016 (3)0.0402 (8)
H170.35430.18020.56160.048*
C180.1847 (6)0.0344 (4)0.6006 (4)0.0535 (11)
H180.2493−0.03310.55830.064*
C190.0299 (6)0.0088 (4)0.6616 (4)0.0530 (11)
C20−0.0680 (5)0.1035 (4)0.7234 (4)0.0537 (10)
H20−0.17510.08270.76550.064*
C21−0.0064 (4)0.2304 (3)0.7228 (3)0.0410 (8)
H21−0.07240.29700.76540.049*
F22−0.0294 (4)−0.1151 (2)0.6613 (3)0.0839 (11)
C230.2733 (4)0.4946 (3)0.4002 (3)0.0311 (7)
C240.3791 (4)0.5746 (3)0.3017 (3)0.0325 (7)
H240.44920.63360.32460.039*
C250.3810 (4)0.5674 (3)0.1697 (3)0.0351 (7)
H250.45300.62370.10380.042*
N260.2871 (4)0.4856 (3)0.1299 (2)0.0377 (7)
C270.1860 (4)0.4099 (3)0.2248 (3)0.0380 (8)
H270.11850.35110.19850.046*
C280.1722 (4)0.4108 (3)0.3597 (3)0.0358 (7)
H280.09600.35590.42280.043*
U11U22U33U12U13U23
N10.0511 (15)0.0246 (12)0.0214 (12)−0.0101 (10)−0.0109 (10)−0.0043 (9)
C20.0429 (15)0.0256 (14)0.0222 (13)−0.0076 (11)−0.0086 (11)−0.0039 (11)
C30.0468 (16)0.0247 (14)0.0228 (13)−0.0090 (12)−0.0129 (12)−0.0028 (11)
C40.0462 (16)0.0268 (14)0.0226 (14)−0.0093 (12)−0.0126 (12)−0.0026 (11)
N50.0520 (15)0.0280 (12)0.0194 (11)−0.0121 (10)−0.0087 (10)−0.0029 (9)
N60.0572 (16)0.0265 (12)0.0207 (12)−0.0128 (11)−0.0116 (11)−0.0023 (9)
C70.0497 (17)0.0234 (14)0.0220 (13)−0.0074 (12)−0.0134 (12)−0.0027 (10)
C80.0541 (19)0.0316 (16)0.0323 (16)−0.0127 (14)−0.0101 (14)−0.0053 (12)
C90.0567 (19)0.0307 (16)0.0373 (17)−0.0164 (14)−0.0114 (14)−0.0044 (13)
C100.063 (2)0.0234 (15)0.0271 (14)−0.0100 (13)−0.0179 (14)−0.0027 (11)
C110.060 (2)0.0285 (15)0.0250 (14)−0.0076 (13)−0.0133 (13)−0.0042 (11)
C120.0519 (18)0.0271 (15)0.0243 (14)−0.0106 (13)−0.0097 (12)−0.0033 (11)
N130.076 (2)0.0256 (13)0.0334 (14)−0.0117 (13)−0.0178 (14)−0.0038 (11)
O140.094 (2)0.0309 (13)0.0451 (14)−0.0082 (13)−0.0039 (14)−0.0144 (11)
O150.084 (2)0.0341 (13)0.0586 (17)−0.0257 (13)−0.0204 (14)−0.0071 (12)
C160.0545 (18)0.0257 (14)0.0198 (13)−0.0108 (12)−0.0149 (12)−0.0005 (10)
C170.066 (2)0.0311 (16)0.0273 (15)0.0001 (14)−0.0170 (14)−0.0058 (12)
C180.104 (3)0.0278 (16)0.0387 (18)0.0041 (18)−0.036 (2)−0.0099 (14)
C190.099 (3)0.0296 (17)0.0393 (18)−0.0258 (18)−0.037 (2)0.0055 (14)
C200.078 (3)0.048 (2)0.0398 (18)−0.0335 (19)−0.0242 (18)0.0077 (16)
C210.058 (2)0.0366 (17)0.0298 (15)−0.0182 (15)−0.0110 (14)−0.0009 (13)
F220.162 (3)0.0346 (12)0.0725 (17)−0.0424 (15)−0.0671 (19)0.0075 (11)
C230.0493 (17)0.0246 (14)0.0227 (14)−0.0061 (12)−0.0139 (12)−0.0027 (11)
C240.0458 (16)0.0280 (14)0.0264 (14)−0.0110 (12)−0.0101 (12)−0.0041 (11)
C250.0506 (18)0.0321 (15)0.0231 (14)−0.0133 (13)−0.0074 (12)−0.0006 (11)
N260.0587 (17)0.0333 (14)0.0249 (12)−0.0115 (12)−0.0161 (11)−0.0024 (10)
C270.0579 (19)0.0326 (16)0.0286 (15)−0.0163 (14)−0.0184 (14)−0.0023 (12)
C280.0558 (18)0.0292 (15)0.0252 (14)−0.0151 (13)−0.0155 (13)0.0018 (11)
N1—C21.365 (4)N13—O141.238 (4)
N1—N51.378 (3)C16—C211.379 (5)
N1—C71.416 (3)C16—C171.401 (5)
C2—N61.376 (4)C17—C181.393 (5)
C2—C31.390 (4)C17—H170.9500
C3—C41.420 (4)C18—C191.366 (6)
C3—C161.478 (4)C18—H180.9500
C4—N51.329 (4)C19—F221.355 (4)
C4—C231.479 (4)C19—C201.372 (7)
N6—H6A0.9055C20—C211.389 (5)
N6—H6B0.8721C20—H200.9500
C7—C81.384 (4)C21—H210.9500
C7—C121.390 (4)C23—C241.392 (4)
C8—C91.383 (4)C23—C281.400 (4)
C8—H80.9500C24—C251.387 (4)
C9—C101.383 (5)C24—H240.9500
C9—H90.9500C25—N261.340 (4)
C10—C111.372 (5)C25—H250.9500
C10—N131.463 (4)N26—C271.331 (4)
C11—C121.386 (4)C27—C281.390 (4)
C11—H110.9500C27—H270.9500
C12—H120.9500C28—H280.9500
N13—O151.223 (4)
C2—N1—N5112.1 (2)O14—N13—C10118.0 (3)
C2—N1—C7129.9 (2)C21—C16—C17118.8 (3)
N5—N1—C7117.9 (2)C21—C16—C3120.4 (3)
N1—C2—N6123.1 (2)C17—C16—C3120.8 (3)
N1—C2—C3106.9 (2)C18—C17—C16120.3 (4)
N6—C2—C3130.0 (3)C18—C17—H17119.8
C2—C3—C4104.2 (2)C16—C17—H17119.8
C2—C3—C16125.9 (3)C19—C18—C17118.7 (4)
C4—C3—C16129.9 (2)C19—C18—H18120.7
N5—C4—C3112.7 (2)C17—C18—H18120.7
N5—C4—C23118.7 (2)F22—C19—C18118.7 (4)
C3—C4—C23128.6 (3)F22—C19—C20118.7 (4)
C4—N5—N1104.1 (2)C18—C19—C20122.6 (3)
C2—N6—H6A115.2C19—C20—C21118.3 (4)
C2—N6—H6B113.1C19—C20—H20120.9
H6A—N6—H6B110.1C21—C20—H20120.9
C8—C7—C12121.2 (3)C16—C21—C20121.3 (4)
C8—C7—N1118.5 (3)C16—C21—H21119.4
C12—C7—N1120.2 (3)C20—C21—H21119.4
C9—C8—C7119.8 (3)C24—C23—C28117.5 (3)
C9—C8—H8120.1C24—C23—C4121.3 (3)
C7—C8—H8120.1C28—C23—C4121.2 (3)
C10—C9—C8118.2 (3)C25—C24—C23119.3 (3)
C10—C9—H9120.9C25—C24—H24120.3
C8—C9—H9120.9C23—C24—H24120.3
C11—C10—C9122.6 (3)N26—C25—C24123.7 (3)
C11—C10—N13118.9 (3)N26—C25—H25118.1
C9—C10—N13118.4 (3)C24—C25—H25118.1
C10—C11—C12119.1 (3)C27—N26—C25116.5 (3)
C10—C11—H11120.5N26—C27—C28124.6 (3)
C12—C11—H11120.5N26—C27—H27117.7
C11—C12—C7118.9 (3)C28—C27—H27117.7
C11—C12—H12120.6C27—C28—C23118.4 (3)
C7—C12—H12120.6C27—C28—H28120.8
O15—N13—O14123.3 (3)C23—C28—H28120.8
O15—N13—C10118.7 (3)
N5—N1—C2—N6179.8 (3)C11—C10—N13—O15177.7 (3)
C7—N1—C2—N6−3.0 (5)C9—C10—N13—O15−5.4 (4)
N5—N1—C2—C3−0.3 (3)C11—C10—N13—O14−4.2 (4)
C7—N1—C2—C3176.9 (3)C9—C10—N13—O14172.8 (3)
N1—C2—C3—C4−0.6 (3)C2—C3—C16—C2159.9 (4)
N6—C2—C3—C4179.2 (3)C4—C3—C16—C21−118.1 (4)
N1—C2—C3—C16−179.1 (3)C2—C3—C16—C17−122.7 (3)
N6—C2—C3—C160.8 (5)C4—C3—C16—C1759.2 (5)
C2—C3—C4—N51.4 (4)C21—C16—C17—C182.1 (4)
C16—C3—C4—N5179.8 (3)C3—C16—C17—C18−175.3 (3)
C2—C3—C4—C23−175.8 (3)C16—C17—C18—C19−1.5 (5)
C16—C3—C4—C232.5 (6)C17—C18—C19—F22−179.6 (3)
C3—C4—N5—N1−1.6 (3)C17—C18—C19—C200.3 (5)
C23—C4—N5—N1176.0 (3)F22—C19—C20—C21−179.8 (3)
C2—N1—N5—C41.1 (3)C18—C19—C20—C210.3 (5)
C7—N1—N5—C4−176.4 (3)C17—C16—C21—C20−1.5 (5)
C2—N1—C7—C8139.2 (3)C3—C16—C21—C20176.0 (3)
N5—N1—C7—C8−43.8 (4)C19—C20—C21—C160.3 (5)
C2—N1—C7—C12−44.6 (5)N5—C4—C23—C2425.7 (5)
N5—N1—C7—C12132.4 (3)C3—C4—C23—C24−157.2 (3)
C12—C7—C8—C9−4.0 (5)N5—C4—C23—C28−152.6 (3)
N1—C7—C8—C9172.2 (3)C3—C4—C23—C2824.5 (5)
C7—C8—C9—C10−0.7 (5)C28—C23—C24—C25−0.5 (5)
C8—C9—C10—C114.0 (5)C4—C23—C24—C25−178.9 (3)
C8—C9—C10—N13−172.8 (3)C23—C24—C25—N26−0.8 (5)
C9—C10—C11—C12−2.6 (5)C24—C25—N26—C271.1 (5)
N13—C10—C11—C12174.2 (3)C25—N26—C27—C280.1 (5)
C10—C11—C12—C7−2.2 (4)N26—C27—C28—C23−1.4 (5)
C8—C7—C12—C115.4 (5)C24—C23—C28—C271.5 (5)
N1—C7—C12—C11−170.7 (3)C4—C23—C28—C27179.9 (3)
D—H···AD—HH···AD···AD—H···A
N6—H6A···O14i0.912.293.149 (4)158
N6—H6B···N26ii0.872.192.985 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N6—H6A⋯O14i0.912.293.149 (4)158
N6—H6B⋯N26ii0.872.192.985 (3)151

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tri- and tetrasubstituted pyrazole derivates: regioisomerism switches activity from p38MAP kinase to important cancer kinases.

Authors:  Bassam Abu Thaher; Martina Arnsmann; Frank Totzke; Jan E Ehlert; Michael H G Kubbutat; Christoph Schächtele; Markus O Zimmermann; Pierre Koch; Frank M Boeckler; Stefan A Laufer
Journal:  J Med Chem       Date:  2012-01-17       Impact factor: 7.446

Review 3.  New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase.

Authors:  Christian Peifer; Gerd Wagner; Stefan Laufer
Journal:  Curr Top Med Chem       Date:  2006       Impact factor: 3.295

4.  Role of the hydrogen bonding heteroatom-Lys53 interaction between the p38alpha mitogen-activated protein (MAP) kinase and pyridinyl-substituted 5-membered heterocyclic ring inhibitors.

Authors:  Bassam Abu Thaher; Pierre Koch; Verena Schattel; Stefan Laufer
Journal:  J Med Chem       Date:  2009-04-23       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  4 in total

1.  Ethyl 5-amino-3-(pyridin-4-yl)-1-(2,4,6-tri-chloro-phen-yl)-1H-pyrazole-4-carb-oxyl-ate dimethyl sulfoxide hemisolvate.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-29

2.  2-Methyl-3-nitro-N-{(E)-[5-(4-nitro-phen-yl)furan-2-yl]methyl-idene}aniline.

Authors:  Merve Pekdemir; Samil Işık; Sümeyye Gümüş; Erbil Ağar; Sema Oztürk Yıldırım; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-04

3.  4-(4-Fluoro-phen-yl)-3-(pyridin-4-yl)-1-(2,4,6-trichloro-phen-yl)-1H-pyrazol-5-amine.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-01

4.  4-[5-Amino-4-(4-fluoro-phen-yl)-3-(pyridin-4-yl)-1H-pyrazol-1-yl]benzo-nitrile.

Authors:  Bassam Abu Thaher; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  4 in total

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