Literature DB >> 22576772

Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants.

Takahiro Nakamura1, Yusuke Yagi, Keiko Kobayashi.   

Abstract

The pentatricopeptide repeat (PPR) protein family is highly expanded in terrestrial plants. Arabidopsis contains 450 PPR genes, which represents 2% of the total protein-coding genes. PPR proteins are eukaryote-specific RNA-binding proteins implicated in multiple aspects of RNA metabolism of organellar genes. Most PPR proteins affect a single or small subset of gene(s), acting in a gene-specific manner. Studies over the last 10 years have revealed the significance of this protein family in coordinated gene expression in different compartments: the nucleus, chloroplast and mitochondrion. Here, we summarize recent studies addressing the mechanistic aspect of PPR proteins.

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Year:  2012        PMID: 22576772     DOI: 10.1093/pcp/pcs069

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  35 in total

1.  Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.

Authors:  Amber M Hotto; Benoît Castandet; Laetitia Gilet; Andrea Higdon; Ciarán Condon; David B Stern
Journal:  Plant Cell       Date:  2015-02-27       Impact factor: 11.277

2.  Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Authors:  Takamasa Teramoto; Kipchumba J Kaitany; Yoshimitsu Kakuta; Makoto Kimura; Carol A Fierke; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

3.  Function of PPR proteins in plastid gene expression.

Authors:  Toshiharu Shikanai; Sota Fujii
Journal:  RNA Biol       Date:  2013-05-30       Impact factor: 4.652

4.  Structural basis for the modular recognition of single-stranded RNA by PPR proteins.

Authors:  Ping Yin; Quanxiu Li; Chuangye Yan; Ying Liu; Junjie Liu; Feng Yu; Zheng Wang; Jiafu Long; Jianhua He; Hong-Wei Wang; Jiawei Wang; Jian-Kang Zhu; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2013-10-27       Impact factor: 49.962

Review 5.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

6.  Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

7.  Identification of new pentatricopeptide repeat proteins, MREF1 and 2, involved in mitochondrial RNA editing, using computational target RNA prediction.

Authors:  Takehito Kobayashi; Yusuke Yagi; Taizo Tamura; Takahiro Nakamura
Journal:  Plant Biotechnol (Tokyo)       Date:  2020-03-25       Impact factor: 1.133

8.  RNA processing factor 7 and polynucleotide phosphorylase are necessary for processing and stability of nad2 mRNA in Arabidopsis mitochondria.

Authors:  Birgit Stoll; Daniel Zendler; Stefan Binder
Journal:  RNA Biol       Date:  2014-07-29       Impact factor: 4.652

9.  Examination of the dimerization states of the single-stranded RNA recognition protein pentatricopeptide repeat 10 (PPR10).

Authors:  Quanxiu Li; Chuangye Yan; Huisha Xu; Zheng Wang; Jiafu Long; Wenqi Li; Jianping Wu; Ping Yin; Nieng Yan
Journal:  J Biol Chem       Date:  2014-09-17       Impact factor: 5.157

10.  High-resolution genetic mapping of rice bacterial blight resistance gene Xa23.

Authors:  Chunlian Wang; Yinglun Fan; Chongke Zheng; Tengfei Qin; Xiaoping Zhang; Kaijun Zhao
Journal:  Mol Genet Genomics       Date:  2014-04-09       Impact factor: 3.291

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