Literature DB >> 23771106

Function of PPR proteins in plastid gene expression.

Toshiharu Shikanai1, Sota Fujii1.   

Abstract

PPR proteins form a huge family in flowering plants and are involved in RNA maturation in plastids and mitochondria. These proteins are sequence-specific RNA-binding proteins that recruit the machinery of RNA processing. We summarize progress in the research on the functional mechanisms of divergent RNA maturation and on the mechanism by which RNA sequences are recognized. We further focus on two topics. RNA editing is an enigmatic process of RNA maturation in organelles, in which members of the PLS subfamily contribute to target site recognition. As the first topic, we speculate on why the PLS subfamily was selected by the RNA editing machinery. Second, we discuss how the regulation of plastid gene expression contributes to efficient photosynthesis. Although the molecular functions of PPR proteins have been studied extensively, information on the physiological significance of regulation by these proteins remains very limited.

Entities:  

Keywords:  PPR; RNA; RNA editing; chloroplast; photosynthesis

Mesh:

Substances:

Year:  2013        PMID: 23771106      PMCID: PMC3858428          DOI: 10.4161/rna.25207

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  107 in total

1.  The evolution of chloroplast RNA editing.

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Journal:  Mol Biol Evol       Date:  2006-07-11       Impact factor: 16.240

2.  Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.

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Journal:  RNA       Date:  2008-07-30       Impact factor: 4.942

Review 3.  The evolution of RNA editing and pentatricopeptide repeat genes.

Authors:  Sota Fujii; Ian Small
Journal:  New Phytol       Date:  2011-05-09       Impact factor: 10.151

4.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

5.  A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing.

Authors:  Kenji Okuda; Takahiro Nakamura; Mamoru Sugita; Toshiyuki Shimizu; Toshiharu Shikanai
Journal:  J Biol Chem       Date:  2006-10-02       Impact factor: 5.157

6.  Thylakoid protein phosphorylation in higher plant chloroplasts optimizes electron transfer under fluctuating light.

Authors:  Mikko Tikkanen; Michele Grieco; Saijaliisa Kangasjärvi; Eva-Mari Aro
Journal:  Plant Physiol       Date:  2009-12-04       Impact factor: 8.340

7.  An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize.

Authors:  Tao Sun; Arnaud Germain; Ludovic Giloteaux; Kamel Hammani; Alice Barkan; Maureen R Hanson; Stéphane Bentolila
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

8.  Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing.

Authors:  Kenji Okuda; Fumiyoshi Myouga; Reiko Motohashi; Kazuo Shinozaki; Toshiharu Shikanai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-02       Impact factor: 11.205

9.  MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.

Authors:  Xenie Johnson; Katia Wostrikoff; Giovanni Finazzi; Richard Kuras; Christian Schwarz; Sandrine Bujaldon; Joerg Nickelsen; David B Stern; Francis-André Wollman; Olivier Vallon
Journal:  Plant Cell       Date:  2010-01-22       Impact factor: 11.277

Review 10.  Rubisco gene expression in C4 plants.

Authors:  Minesh Patel; James O Berry
Journal:  J Exp Bot       Date:  2008-03-05       Impact factor: 6.992

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  20 in total

Review 1.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

2.  RAP, the sole octotricopeptide repeat protein in Arabidopsis, is required for chloroplast 16S rRNA maturation.

Authors:  Laura Kleinknecht; Fei Wang; Roland Stübe; Katrin Philippar; Jörg Nickelsen; Alexandra-Viola Bohne
Journal:  Plant Cell       Date:  2014-02-28       Impact factor: 11.277

3.  Albino Leaf1 That Encodes the Sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development.

Authors:  Zemin Zhang; Jianjie Tan; Zhenying Shi; Qingjun Xie; Yi Xing; Changhong Liu; Qiaoling Chen; Haitao Zhu; Jiang Wang; Jingliu Zhang; Guiquan Zhang
Journal:  Plant Physiol       Date:  2016-04-22       Impact factor: 8.340

4.  HIGH CHLOROPHYLL FLUORESCENCE145 Binds to and Stabilizes the psaA 5' UTR via a Newly Defined Repeat Motif in Embryophyta.

Authors:  Nikolay Manavski; Salar Torabi; Lina Lezhneva; Muhammad Asif Arif; Wolfgang Frank; Jörg Meurer
Journal:  Plant Cell       Date:  2015-08-25       Impact factor: 11.277

5.  Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing.

Authors:  Fan Zhang; Weijiang Tang; Boris Hedtke; Linlin Zhong; Lin Liu; Lianwei Peng; Congming Lu; Bernhard Grimm; Rongcheng Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

6.  Cellular and transcriptomic analyses reveal two-staged chloroplast biogenesis underpinning photosynthesis build-up in the wheat leaf.

Authors:  Naresh Loudya; Priyanka Mishra; Kotaro Takahagi; Yukiko Uehara-Yamaguchi; Komaki Inoue; Laszlo Bogre; Keiichi Mochida; Enrique López-Juez
Journal:  Genome Biol       Date:  2021-05-11       Impact factor: 13.583

Review 7.  Temporal aspects of copper homeostasis and its crosstalk with hormones.

Authors:  Lola Peñarrubia; Paco Romero; Angela Carrió-Seguí; Amparo Andrés-Bordería; Joaquín Moreno; Amparo Sanz
Journal:  Front Plant Sci       Date:  2015-04-17       Impact factor: 5.753

8.  Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of Chlamydomonas.

Authors:  Karen Loizeau; Yujiao Qu; Sébastien Depp; Vincent Fiechter; Hannes Ruwe; Linnka Lefebvre-Legendre; Christian Schmitz-Linneweber; Michel Goldschmidt-Clermont
Journal:  Nucleic Acids Res       Date:  2013-12-11       Impact factor: 16.971

Review 9.  Genetic regulation and structural changes during tomato fruit development and ripening.

Authors:  Paolo Pesaresi; Chiara Mizzotti; Monica Colombo; Simona Masiero
Journal:  Front Plant Sci       Date:  2014-04-23       Impact factor: 5.753

10.  Drosophila melanogaster LRPPRC2 is involved in coordination of mitochondrial translation.

Authors:  Francesca Baggio; Ana Bratic; Arnaud Mourier; Timo E S Kauppila; Luke S Tain; Christian Kukat; Bianca Habermann; Linda Partridge; Nils-Göran Larsson
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

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